BAC Information

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BAC

Clone NameB6Ng01-286D24
Chromosome9 (Build37)
Map Location 6,995,355 - 7,125,349
singlet/doubletdoublet
Overlap geneDync2h1, LOC100039658
Upstream geneLOC664957, LOC676037, Pdgfd, Ddi1, EG664919, LOC100039400, LOC100039418, EG547034
Downstream geneDcun1d5, Mmp13, Mmp12, Mmp1b, Mmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik, AK129341, LOC100039855
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286D24.bB6Ng01-286D24.g
ACCGA084496GA084497
length1,1721,175
definitionB6Ng01-286D24.b B6Ng01-286D24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,995,355 - 6,996,535)(7,124,174 - 7,125,349)
sequence
gaattcaaaaccttgagacataagtgattttgtcacttttttttaaaata
gaactaggctacccacacagtaaagagaaggtgtccacagctggaacctt
aatatcaacagttcctaagaagcagggggcatcaccatgacctaatttcc
cacactaccttcatcttccctagctgatacagtcctaatggcagacactg
ctaacacagttaccaaggaatgcagaaacaagagcttactttcaatttat
aaagaaaaatgtcagcacatgattgcagtaattttatattgaaaaaatct
tgtttttcttttagacttgttctctaaacaaaatttgttattcaagttta
aaaaatgagaaattatgaaaaacaacaacaacaaaaagacagccaacaat
tactgctgtggtttcttaaatttgcacagtaagtgtgttacagttaaagg
tcaggtgctccaggtggttttctcatcctaacgtccattctgatctcttt
actaaaaacaagttgcagaacaatgtctaatgcctatgatggacacatga
tagatactaacatgcaggtaataaacaaaggacaggtgtgctttcacatg
gactgcagtgtgggttacaatctagtaaacattgtcacatgtttggctgt
ctgaagacaggaaacccaaggaagaaagccttaccatccagatggactgt
tgcacacacagtgacacagtgtgtttaaaaggggaaaaggaaagcaatgg
ggattagataagcagtcacacacatggctaaaggctttagggcagataaa
cagaaccagagtgtgacatggaaatgggaaaatatcctgccaaagaatag
gatccctgagaaaatgagagaggtgtaagagcatgaatgaccatgccatc
cactgaaacagggacttggtaaagagcagttggacaaggcaacaaggctg
acagggatgtggggacagaatttgtgaattgctgttagagcgttcaagtt
taaatttctattgatctaatctgctctgattcacagtgttttctgagctc
taatgccccgtgtctcagaatgcacagtgtcatctaggtgttgaatagtc
tcaagcctcactcgacggcttctgccgaacttaccttcgcagtctcagac
agcaaacttcttagttctagcc
gaattcttctaacagtgcttctttatatggtgcagatgattatttaaaaa
taacatttccctttaacttgtattgagaagtagaatataaattaataact
gagtaaaatcacatgtttaagtgtattaatgactaaagaaagcatctatg
ttttcaactttatgtaaagcagcctctttaaaagagaaatgctgagctta
aagatcacattgtcactgtgttctcatttatttaactagtgatctattta
aggttttatttttgcagtgaggtaatttatatttatagaagaaaggtgtt
tacagaatggaaagactggtgaatcgcatatgaacatatatcttttctcc
tagatgaagaaggctctagaattatatgaacagttgcgccagagaacggg
cgttgttattgttggtccaagtggtgctggcaaatctaccctttggagaa
tgttaagggctgcactttgtaaaattggcaaagtagtaaaacagtacact
atgaatcccaaagctatgcccagacatcagctcttaggacacattgacat
ggatacaagagagtggtcagatggcgttttgacaaatagtgctcgccaag
tagttcgtgagcctcaaggttggtcactattttatttattcatcttagag
aaaacatagcctgtttataatgtttgcactgaactgtatgtatgacttaa
aacactttataatgtttttatatattttagtagatgttactacttttatt
attgttttgttgagacaaagttttatgctgtcatgttatatgcatcactc
aatagcaaatttaacaaaatcaaaaatcagtgtaacttgattaaaatata
attcataactaatttactggaagaatataaaatcttggagtaattagttg
acatatgcctttttaatataactgatatatttgaatgagttattttgaaa
attgaaatgataaaacatttattctggtctaagttttctcaatttactgt
gtgtttgtttttggtttcattttatatttgtgagaccaagatctcactat
tgtagcttgggcatagaactttgccttgtgtagaacaagacttggacttg
gaactcaatggatatctggcctggccttgtctcagactgcacatagacgt
gccaacagacctgacactggttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_6995355_6996535
seq2: B6Ng01-286D24.b_46_1217

seq1  GAATTCAAAACCTTGAGACATAAGTGATTTTGTCACTTTTTTTTAAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACCTTGAGACATAAGTGATTTTGTCACTTTTTTTTAAAATA  50

seq1  GAACTAGGCTACCCACACAGTAAAGAGAAGGTGTCCACAGCTGGAACCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGGCTACCCACACAGTAAAGAGAAGGTGTCCACAGCTGGAACCTT  100

seq1  AATATCAACAGTTCCTAAGAAGCAGGGGGCATCACCATGACCTAATTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAACAGTTCCTAAGAAGCAGGGGGCATCACCATGACCTAATTTCC  150

seq1  CACACTACCTTCATCTTCCCTAGCTGATACAGTCCTAATGGCAGACACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTACCTTCATCTTCCCTAGCTGATACAGTCCTAATGGCAGACACTG  200

seq1  CTAACACAGTTACCAAGGAATGCAGAAACAAGAGCTTACTTTCAATTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACAGTTACCAAGGAATGCAGAAACAAGAGCTTACTTTCAATTTAT  250

seq1  AAAGAAAAATGTCAGCACATGATTGCAGTAATTTTATATTGAAAAAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAATGTCAGCACATGATTGCAGTAATTTTATATTGAAAAAATCT  300

seq1  TGTTTTTCTTTTAGACTTGTTCTCTAAACAAAATTTGTTATTCAAGTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCTTTTAGACTTGTTCTCTAAACAAAATTTGTTATTCAAGTTTA  350

seq1  AAAAATGAGAAATTATGAAAAACAACAACAACAAAAAGACAGCCAACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAGAAATTATGAAAAACAACAACAACAAAAAGACAGCCAACAAT  400

seq1  TACTGCTGTGGTTTCTTAAATTTGCACAGTAAGTGTGTTACAGTTAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTGTGGTTTCTTAAATTTGCACAGTAAGTGTGTTACAGTTAAAGG  450

seq1  TCAGGTGCTCCAGGTGGTTTTCTCATCCTAACGTCCATTCTGATCTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGCTCCAGGTGGTTTTCTCATCCTAACGTCCATTCTGATCTCTTT  500

seq1  ACTAAAAACAAGTTGCAGAACAATGTCTAATGCCTATGATGGACACATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAACAAGTTGCAGAACAATGTCTAATGCCTATGATGGACACATGA  550

seq1  TAGATACTAACATGCAGGTAATAAACAAAGGACAGGTGTGCTTTCACATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACTAACATGCAGGTAATAAACAAAGGACAGGTGTGCTTTCACATG  600

seq1  GACTGCAGTGTGGGTTACAATCTAGTAAACATTGTCACATGTTTGGCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCAGTGTGGGTTACAATCTAGTAAACATTGTCACATGTTTGGCTGT  650

seq1  CTGAAGACAGGAAACCCAAGGAAGAAAGCCTTACCATCCAGATGGACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGACAGGAAACCCAAGGAAGAAAGCCTTACCATCCAGATGGACTGT  700

seq1  TGCACACACAGTGACACAGTGTGTTTAAAAGGGGAAAAGGAAAGCAATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACACAGTGACACAGTGTGTTTAAAAGGGGAAAAGGAAAGCAATGG  750

seq1  GGATTAGATAAGCAGTCACACACATGGCT-AAGGCTTTAGGGCAGATAAA  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGATTAGATAAGCAGTCACACACATGGCTAAAGGCTTTAGGGCAGATAAA  800

seq1  CAGAACCAGAGTGTGACATGGAAATGGGAAAATATCCTGCCAAAGAATAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCAGAGTGTGACATGGAAATGGGAAAATATCCTGCCAAAGAATAG  850

seq1  GATCCCTGAGAAAATGAGAGAGGTGTAAGAGCATGAATGACCATGCCATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTGAGAAAATGAGAGAGGTGTAAGAGCATGAATGACCATGCCATC  900

seq1  CACTGAAACAGGGGACTTGGTAAAGAGCAGTTGGACAAGGCAACAAGGCT  949
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAACA-GGGACTTGGTAAAGAGCAGTTGGACAAGGCAACAAGGCT  949

seq1  GACAGGGAATGTGGGGACAGAATTTGTGAATTGCTGTTAGAGCGTTCAAG  999
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGG-ATGTGGGGACAGAATTTGTGAATTGCTGTTAGAGCGTTCAAG  998

seq1  TTTAAATTTCTATTGATCTAATCTGCTCTTGGATTCACAGTG-TTTCTGA  1048
      |||||||||||||||||||||||||||||  ||||||||||| |||||||
seq2  TTTAAATTTCTATTGATCTAATCTGCTCT--GATTCACAGTGTTTTCTGA  1046

seq1  GCTCTAATGCCCCCTTGTCTCAGGAATGCACAGTGTCATCTAGGGTGTGA  1098
      ||||||||| |||| ||||||| |||||||||||||||||||||   |||
seq2  GCTCTAATG-CCCCGTGTCTCA-GAATGCACAGTGTCATCTAGGTGTTGA  1094

seq1  TAAGTCTCAAGCCTCACTCCGCACCGCTTCTGCAG-ACTTA-CTTCGCAG  1146
        |||||||||||||||||   || |||||||| | ||||| ||||||||
seq2  ATAGTCTCAAGCCTCACTC--GACGGCTTCTGCCGAACTTACCTTCGCAG  1142

seq1  TTCCTCCAGGACCACACAACTTCTTAGTTCTAGCC  1181
      |  |||   |||  || ||||||||||||||||||
seq2  T--CTC--AGACAGCA-AACTTCTTAGTTCTAGCC  1172

seq1: chr9_7124174_7125349
seq2: B6Ng01-286D24.g_67_1241 (reverse)

seq1  CAAAACCA-AGTCAGGTCTGGTGGCACGGGCCTTTTGTGCAGTCTGGAGA  49
      ||||||||  |||||||||| |||||||     | |||||||||| ||||
seq2  CAAAACCAGTGTCAGGTCTGTTGGCACG---TCTATGTGCAGTCT-GAGA  46

seq1  CAGAGGCAGG-CAGATCT-CATTGAGTT-CAAGGCC-AGTC-TGGTCTAC  94
      ||  | |||| ||||| | ||||||||| |||| || |||| || |||||
seq2  CAAGGCCAGGCCAGATATCCATTGAGTTCCAAGTCCAAGTCTTGTTCTAC  96

seq1  ACA--GC-AAGTTCTATGCCAAAGCTAC-ATAGTGAGATCTT-GTCTCAC  139
      |||  || |||||||||||| ||||||| ||||||||||||| |||||||
seq2  ACAAGGCAAAGTTCTATGCCCAAGCTACAATAGTGAGATCTTGGTCTCAC  146

seq1  AAATATAAAATGAAAACCAAAAAACAAAACAACACA-AGTAAATTGAGAA  188
      |||||||||||||||  | |||||||    |||||| |||||||||||||
seq2  AAATATAAAATGAAA--CCAAAAACA----AACACACAGTAAATTGAGAA  190

seq1  AACTTAGACCAAGAAATAAATTGTTTTATCATTTCAATTTTCAAAATAAC  238
      |||||||||||   |||||| |||||||||||||||||||||||||||||
seq2  AACTTAGACCA--GAATAAA-TGTTTTATCATTTCAATTTTCAAAATAAC  237

seq1  TCATTCAAATATATCAGTTATATTAAAAAGGCATATGTCAACTAATTACT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAAATATATCAGTTATATTAAAAAGGCATATGTCAACTAATTACT  287

seq1  CCAAGATTTTATATTCTTCCAGTAAATTAGTTATGAATTATATTTTAATC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATTTTATATTCTTCCAGTAAATTAGTTATGAATTATATTTTAATC  337

seq1  AAGTTACACTGATTTTTGATTTTGTTAAATTTGCTATTGAGTGATGCATA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACACTGATTTTTGATTTTGTTAAATTTGCTATTGAGTGATGCATA  387

seq1  TAACATGACAGCATAAAACTTTGTCTCAACAAAACAATAATAAAAGTAGT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGACAGCATAAAACTTTGTCTCAACAAAACAATAATAAAAGTAGT  437

seq1  AACATCTACTAAAATATATAAAAACATTATAAAGTGTTTTAAGTCATACA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTACTAAAATATATAAAAACATTATAAAGTGTTTTAAGTCATACA  487

seq1  TACAGTTCAGTGCAAACATTATAAACAGGCTATGTTTTCTCTAAGATGAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTCAGTGCAAACATTATAAACAGGCTATGTTTTCTCTAAGATGAA  537

seq1  TAAATAAAATAGTGACCAACCTTGAGGCTCACGAACTACTTGGCGAGCAC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAATAGTGACCAACCTTGAGGCTCACGAACTACTTGGCGAGCAC  587

seq1  TATTTGTCAAAACGCCATCTGACCACTCTCTTGTATCCATGTCAATGTGT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTCAAAACGCCATCTGACCACTCTCTTGTATCCATGTCAATGTGT  637

seq1  CCTAAGAGCTGATGTCTGGGCATAGCTTTGGGATTCATAGTGTACTGTTT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAGCTGATGTCTGGGCATAGCTTTGGGATTCATAGTGTACTGTTT  687

seq1  TACTACTTTGCCAATTTTACAAAGTGCAGCCCTTAACATTCTCCAAAGGG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTTTGCCAATTTTACAAAGTGCAGCCCTTAACATTCTCCAAAGGG  737

seq1  TAGATTTGCCAGCACCACTTGGACCAACAATAACAACGCCCGTTCTCTGG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTGCCAGCACCACTTGGACCAACAATAACAACGCCCGTTCTCTGG  787

seq1  CGCAACTGTTCATATAATTCTAGAGCCTTCTTCATCTAGGAGAAAAGATA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAACTGTTCATATAATTCTAGAGCCTTCTTCATCTAGGAGAAAAGATA  837

seq1  TATGTTCATATGCGATTCACCAGTCTTTCCATTCTGTAAACACCTTTCTT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCATATGCGATTCACCAGTCTTTCCATTCTGTAAACACCTTTCTT  887

seq1  CTATAAATATAAATTACCTCACTGCAAAAATAAAACCTTAAATAGATCAC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAATATAAATTACCTCACTGCAAAAATAAAACCTTAAATAGATCAC  937

seq1  TAGTTAAATAAATGAGAACACAGTGACAATGTGATCTTTAAGCTCAGCAT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAATAAATGAGAACACAGTGACAATGTGATCTTTAAGCTCAGCAT  987

seq1  TTCTCTTTTAAAGAGGCTGCTTTACATAAAGTTGAAAACATAGATGCTTT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTTAAAGAGGCTGCTTTACATAAAGTTGAAAACATAGATGCTTT  1037

seq1  CTTTAGTCATTAATACACTTAAACATGTGATTTTACTCAGTTATTAATTT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTCATTAATACACTTAAACATGTGATTTTACTCAGTTATTAATTT  1087

seq1  ATATTCTACTTCTCAATACAAGTTAAAGGGAAATGTTATTTTTAAATAAT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTACTTCTCAATACAAGTTAAAGGGAAATGTTATTTTTAAATAAT  1137

seq1  CATCTGCACCATATAAAGAAGCACTGTTAGAAGAATTC  1176
      ||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCACCATATAAAGAAGCACTGTTAGAAGAATTC  1175