BAC Information

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BAC

Clone NameB6Ng01-287B08
Chromosome9 (Build37)X (Build37)
Map Location 73,252,956 - 73,253,005101,336,817 - 101,337,741
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081
Downstream geneUnc13c, Wdr72, Nr1h2-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287B08.bB6Ng01-287B08.g
ACCGA085107GA085108
length147998
definitionB6Ng01-287B08.b B6Ng01-287B08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(73,252,956 - 73,253,005)(101,336,817 - 101,337,741)
sequence
taggatggccagagctatagagagaaaccctgtcttaaaaaacatgtagc
agaggatggcttagtcagtcatcaatgggagaagaggcccttggtcctgt
gaaggttctatgccccagtatagaggaatgccagggccaggaatggg
gaattctggtgtcagttatgcttgtatcttgtgtgatatttaatagagta
gtatttgtaaattacattgaagaaaaaaataacatagctaaaataataaa
caggaggaccctgaaaaccaaattccatgactggtacacttacactgact
cttaagcaagatcacaaaaaaataattctaatagactgggatctgtcaag
aggaagaaaataaatccatatgaatttagtatttttttttaaaagaagaa
actttcaatatgttttcttctctagatagagtaagatagtgattgcaagt
tgtaaattgaaccagctttctattgcttaaatactacaatcccttctttt
taaaatttctttacatatttattttattttaccattgggcatttgtattc
ctccaatattctctttatttccttcttttcctttttattaatcattttat
tcatttacatttcaaatgatatcccccctttcctggttacccatccacaa
accacccatcccatcccctctccctcctcccctttgcctctgtaagggtg
ctcttccacctcacccatcactcgtgcctcactgctctaacatcccccta
tgctggggcatcaagcctccacaggaccaagggtctcccctcccactgat
gtcacataaagccatcttctactacatatgtggttggagccatagacgca
ctcagttatactctttggttggtggtttagtccctgggagctctggggga
tctggctacttgataatgttgttcttcctatggggttacaatcgccttca
gctccttcattccttcccccatctcttcaactggttggctgtgagcatct
actactgtatttgtcaggctctggcacagcctctcaggagacagcactat
accagactcctgtcagcaaacacttcttggcatcagcaatagtgtctagg
tttggtgtctggatgggatggattccttggtggggcattctctagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_73252956_73253005
seq2: B6Ng01-287B08.b_120_169 (reverse)

seq1  ACTGGGGCATAGAGCCTTCACAGGACCAAGGGCCTCTCCTCCCATTGATG  50
      ||||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  ACTGGGGCATAGAACCTTCACAGGACCAAGGGCCTCTTCTCCCATTGATG  50

seq1: chrX_101336817_101337741
seq2: B6Ng01-287B08.g_66_990

seq1  GAATTCTGGTGTCAGTTATGCTTGTATCTTGTGTGATATTTAATAGAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTGTCAGTTATGCTTGTATCTTGTGTGATATTTAATAGAGTA  50

seq1  GTATTTGTAAATTACATTGAAGAAAAAAATAACATAGCTAAAATAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGTAAATTACATTGAAGAAAAAAATAACATAGCTAAAATAATAAA  100

seq1  CAGGAGGACCCTGAAAACCAAATTCCATGACTGGTACACTTACACTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGACCCTGAAAACCAAATTCCATGACTGGTACACTTACACTGACT  150

seq1  CTTAAGCAAGATCACAAAAAAATAATTCTAATAGACTGGGATCTGTCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGCAAGATCACAAAAAAATAATTCTAATAGACTGGGATCTGTCAAG  200

seq1  AGGAAGAAAATAAATCCATATGAATTTAGTATTTTTTTTTAAAAGAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAAATAAATCCATATGAATTTAGTATTTTTTTTTAAAAGAAGAA  250

seq1  ACTTTCAATATGTTTTCTTCTCTAGATAGAGTAAGATAGTGATTGCAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAATATGTTTTCTTCTCTAGATAGAGTAAGATAGTGATTGCAAGT  300

seq1  TGTAAATTGAACCAGCTTTCTATTGCTTAAATACTACAATCCCTTCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATTGAACCAGCTTTCTATTGCTTAAATACTACAATCCCTTCTTTT  350

seq1  TAAAATTTCTTTACATATTTATTTTATTTTACCATTGGGCATTTGTATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTCTTTACATATTTATTTTATTTTACCATTGGGCATTTGTATTC  400

seq1  CTCCAATATTCTCTTTATTTCCTTCTTTTCCTTTTTATTAATCATTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATATTCTCTTTATTTCCTTCTTTTCCTTTTTATTAATCATTTTAT  450

seq1  TCATTTACATTTCAAATGATATCCCCCCTTTCCTGGTTACCCATCCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTACATTTCAAATGATATCCCCCCTTTCCTGGTTACCCATCCACAA  500

seq1  ACCACCCATCCCATCCCCTCTCCCTCCTCCCCTTTGCCTCTGTAAGGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCATCCCATCCCCTCTCCCTCCTCCCCTTTGCCTCTGTAAGGGTG  550

seq1  CTCTTCCACCTCACCCATCACTCGTGCCTCACTGCTCTAACATCCCCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCACCTCACCCATCACTCGTGCCTCACTGCTCTAACATCCCCCTA  600

seq1  TGCTGGGGCATCAAGCCTCCACAGGACCAAGGGTCTCCCCTCCCACTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGGCATCAAGCCTCCACAGGACCAAGGGTCTCCCCTCCCACTGAT  650

seq1  GTCACATAAAGCCATCTTCTACTACATATGTGGTTGGAGCCATAGACGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATAAAGCCATCTTCTACTACATATGTGGTTGGAGCCATAGACGCA  700

seq1  CTCAGTTATACTCTTTGGTTGGTGGTTTAGTCCCTGGGAGCTCTGGGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTATACTCTTTGGTTGGTGGTTTAGTCCCTGGGAGCTCTGGGGGA  750

seq1  TCTGGCTACTTGATAATGTTGTTCTTCCTATGGGGTTACAATCGCCTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTACTTGATAATGTTGTTCTTCCTATGGGGTTACAATCGCCTTCA  800

seq1  GCTCCTTCATTCCTTCCCCCATCTCTTCAACTGGTTGGCTGTGAGCATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTCATTCCTTCCCCCATCTCTTCAACTGGTTGGCTGTGAGCATCT  850

seq1  ACTACTGTATTTGTCAGGCTCTGGCACAGCCTCTCAGGAGACAGCACTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGTATTTGTCAGGCTCTGGCACAGCCTCTCAGGAGACAGCACTAT  900

seq1  ACCAGACTCCTGTCAGCAAACACTT  925
      |||||||||||||||||||||||||
seq2  ACCAGACTCCTGTCAGCAAACACTT  925