BAC Information

Click to search

BAC

Clone NameB6Ng01-289B04
Chromosome9 (Build37)
Map Location 91,926,142 - 92,053,185
singlet/doubletdoublet
Overlap genenone
Upstream geneEG434428, LOC621576, Zic1, Zic4
Downstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289B04.bB6Ng01-289B04.g
ACCGA086570GA086571
length1,0931,139
definitionB6Ng01-289B04.b B6Ng01-289B04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,926,142 - 91,927,225)(92,052,052 - 92,053,185)
sequence
gaattcccactgtgtacatgtgccactgccatactgtcaatgagaatcta
atgattcctttttctgactgttgtgacagtgcatctgtaaactttagtgg
gcaagtgagtctagagtattttgagtctttgatcatatatctagaaggca
taagggagtcttacatggtagtttagtttttctttttttgtgtgtcattt
aatttagtttttctatattaatgtcttagttagggcttctattactgcaa
taaatctccatgaccaaaaagcaaattggggtagaaagggtttattcggt
gtatacttctacattgctgttcatcaccaaaggaagtcaggacaagaact
tgagtagggcaggattctggaggcagaagctgaccaagaggccatggagg
agtggtgcttaatagcttgcttcccatggcttgctcagcctgttatctga
tagaacccaaggccacaaatctagggatggaaccacccacaattggctgg
gcctttccccattaatcactaattgagaaaatgcttacagctggatctta
tggagtcatcttttcaacttagactccttcctctctggtgactctagcat
gtgtcaagttgacacacagaaccagccagttcaatgattttcagagaggg
agcgtgagcaagactccaaacactaaacaggtatctgtgttttcccttat
cctttcgattattcctttcttgatgaagagcattttgatgcatgtaagtt
agactctgaaagtagggtttttcccttaatttatttttagtctttttatt
gaaaatagaattttttttcctcacataatatatcctgattacagattccc
tctcctactctcccaattcctcctcaccttgcctccaatctggatctaat
cactataaaagtaaaacataatacatagtaaaaaaagataaaacagaaaa
taatacatttaaaatagaacaaaacaaacagaagggaaaagaacccaaga
aacagatctaaatgtagaagaccccctcacttgttcacaacacttagaaa
ttccataaaaacgcttaaactggaagctctaagaatgatagat
gaattctttcttcgtagaagaacagatacaagtggaggacatgttaaaat
aaggtagaaggagggagacagtcatcatgtgttttctgtcccatgtaaaa
attataaaagaaacataaacaaataaatacatggacttcaaagtatgaga
gggattggtagagtgttatgtggttttctggggagacataaaccaatatg
ggcaccaatcacagacaagaggaatgcttccaccttagtagagctgagtg
agtcagtgagcacattgaaggaatctgggtgagggattcatttatagggg
aattgtgactacttgtacagctgcaccaacaaacagtttaccccataaga
aaagcaggaacttccagaaacttgaatgtgttgacttcctgaggcttgta
agttttcctaactttctgagtcttaagaacacttcccccagatgtaatgt
tttagtgtcagaggaaatttctacaccacccaggggctgtagatgtttca
agtgaaagaatgcatagatgtaattgatgcaagttgtatggctgtctgga
aatataacaaattccattaatttgcacaggcaagaaatactaaaagccat
cttgatgtttttatatccccattaatggaaaaacatctctcagctacaaa
taaattcatggtacattccaagatctgtgcatttcttatatattcatagc
taatacgtagttgataacattctactaagtcccagactagagcctttaag
ggccacaggaagaattaaaaacctgtttctctatttgtaatatagccatt
tacttccagtagatacattctcctgatgactcttactgacatataacccg
aacagcccaattagttcaagagaacagaattttgttcaacagaagtgttt
cctctctcgtgtaagaaaatataaggctttgattctaatgacccctacat
aaaacctgtgcagttggaagcttgtgtgtttttgaaactgtttaatttct
aaacaaagatattaggattcaagtccctacacagttcaaagaaaaacact
cctctttggacagaaaaaaatacttcattttcattagagaatgttgaaat
ctctatgacctctatgcaataggtggccaaatttatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_91926142_91927225
seq2: B6Ng01-289B04.b_46_1138

seq1  GAATTCCCACTGTGTACATGTGCCACTGCCATACTGTCAATGAGAATCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACTGTGTACATGTGCCACTGCCATACTGTCAATGAGAATCTA  50

seq1  ATGATTCCTTTTTCTGACTGTTGTGACAGTGCATCTGTAAACTTTAGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCCTTTTTCTGACTGTTGTGACAGTGCATCTGTAAACTTTAGTGG  100

seq1  GCAAGTGAGTCTAGAGTATTTTGAGTCTTTGATCATATATCTAGAAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGAGTCTAGAGTATTTTGAGTCTTTGATCATATATCTAGAAGGCA  150

seq1  TAAGGGAGTCTTACATGGTAGTTTAGTTTTTCTTTTTTTGTGTGTCATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGAGTCTTACATGGTAGTTTAGTTTTTCTTTTTTTGTGTGTCATTT  200

seq1  AATTTAGTTTTTCTATATTAATGTCTTAGTTAGGGCTTCTATTACTGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGTTTTTCTATATTAATGTCTTAGTTAGGGCTTCTATTACTGCAA  250

seq1  TAAATCTCCATGACCAAAAAGCAAATTGGGGTAGAAAGGGTTTATTCGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTCCATGACCAAAAAGCAAATTGGGGTAGAAAGGGTTTATTCGGT  300

seq1  GTATACTTCTACATTGCTGTTCATCACCAAAGGAAGTCAGGACAAGAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTTCTACATTGCTGTTCATCACCAAAGGAAGTCAGGACAAGAACT  350

seq1  TGAGTAGGGCAGGATTCTGGAGGCAGAAGCTGACCAAGAGGCCATGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGGGCAGGATTCTGGAGGCAGAAGCTGACCAAGAGGCCATGGAGG  400

seq1  AGTGGTGCTTAATAGCTTGCTTCCCATGGCTTGCTCAGCCTGTTATCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGCTTAATAGCTTGCTTCCCATGGCTTGCTCAGCCTGTTATCTGA  450

seq1  TAGAACCCAAGGCCACAAATCTAGGGATGGAACCACCCACAATTGGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCCAAGGCCACAAATCTAGGGATGGAACCACCCACAATTGGCTGG  500

seq1  GCCTTTCCCCATTAATCACTAATTGAGAAAATGCTTACAGCTGGATCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCCCCATTAATCACTAATTGAGAAAATGCTTACAGCTGGATCTTA  550

seq1  TGGAGTCATCTTTTCAACTTAGACTCCTTCCTCTCTGGTGACTCTAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCATCTTTTCAACTTAGACTCCTTCCTCTCTGGTGACTCTAGCAT  600

seq1  GTGTCAAGTTGACACACAGAACCAGCCAGTTCAATGATTTTCAGAGAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAAGTTGACACACAGAACCAGCCAGTTCAATGATTTTCAGAGAGGG  650

seq1  AGCGTGAGCAAGACTCCAAACACTAAACAGGTATCTGTGTTTTCCCTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGAGCAAGACTCCAAACACTAAACAGGTATCTGTGTTTTCCCTTAT  700

seq1  CCTTTCGATTATTCCTTTCTTGATGAAGAGCATTTTGATGCATGTAAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCGATTATTCCTTTCTTGATGAAGAGCATTTTGATGCATGTAAGTT  750

seq1  AGACTCTGAAAGTAGGGTTTTTCCCTTAATTTA-TTTTAGTCTTTTTATT  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGACTCTGAAAGTAGGGTTTTTCCCTTAATTTATTTTTAGTCTTTTTATT  800

seq1  GAAAATAGAA-TTTTTTTCCTCACATAATATATCCTGATTACAGATT-CC  847
      |||||||||| |||||||||||||||||||||||||||||||||||| ||
seq2  GAAAATAGAATTTTTTTTCCTCACATAATATATCCTGATTACAGATTCCC  850

seq1  TCTCCTACTCTCCCAATTCCTCCTCACCTTGCCTCCAATCTGGATCTAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTACTCTCCCAATTCCTCCTCACCTTGCCTCCAATCTGGATCTAAT  900

seq1  CACTATAAAAGTAAAACATAATACATAGTAAAAAAAGATAAAACAGAAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATAAAAGTAAAACATAATACATAGTAAAAAAAGATAAAACAGAAAA  950

seq1  TAATACA-TTAAAATAGAACAAAACAAACAGAA-GGAAAAGAACCCAAGA  995
      ||||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  TAATACATTTAAAATAGAACAAAACAAACAGAAGGGAAAAGAACCCAAGA  1000

seq1  AACAGATCTAAATGTAG-AGA-CCCCTCACTTGTTCAC-ACACTTAGAAA  1042
      ||||||||||||||||| ||| |||||||||||||||| |||||||||||
seq2  AACAGATCTAAATGTAGAAGACCCCCTCACTTGTTCACAACACTTAGAAA  1050

seq1  TCCCATAAAAACGC-TAAACTGGAAGCTCTAAGATAGATAGAT  1084
      | |||||||||||| |||||||||||||||||||  |||||||
seq2  TTCCATAAAAACGCTTAAACTGGAAGCTCTAAGAATGATAGAT  1093

seq1: chr9_92052052_92053185
seq2: B6Ng01-289B04.g_67_1205 (reverse)

seq1  AAGATAATTTTGGCCACCTATTGCATAGAAGTCAT--AGAATTCAACATT  48
      ||||||| ||||||||||||||||||||| |||||  ||| |||||||||
seq2  AAGATAAATTTGGCCACCTATTGCATAGAGGTCATAGAGATTTCAACATT  50

seq1  CTCTAAATGAAAATGAAGTA--TTTTTCTGTCCAAAGA-GAGTG-TTTTC  94
      |||| |||||||||||||||  |||||||||||||||| ||||| |||||
seq2  CTCT-AATGAAAATGAAGTATTTTTTTCTGTCCAAAGAGGAGTGTTTTTC  99

seq1  TTTGAACTGTTGTAGGGAC-TGAATCTTAATATCTTTGTTTAGAAA-TAA  142
      ||||||||| ||||||||| |||||| ||||||||||||||||||| |||
seq2  TTTGAACTG-TGTAGGGACTTGAATCCTAATATCTTTGTTTAGAAATTAA  148

seq1  ACAGTTTC-AAAACACACAAGCTTCCAACTGCACAGGTTTTTATGTAGGG  191
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  ACAGTTTCAAAAACACACAAGCTTCCAACTGCACAGG-TTTTATGTAGGG  197

seq1  GTCATTAGAATCAAAGCCTTATATTTTCTTACACGAGAGAGGAAAACACT  241
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTCATTAGAATCAAAGCCTTATATTTTCTTACACGAGAGAGG-AAACACT  246

seq1  TCTGTTGAACAAAATTCTGTTCTCTTGAACTAATTGGGCTGTTCGGGTTA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGAACAAAATTCTGTTCTCTTGAACTAATTGGGCTGTTCGGGTTA  296

seq1  TATGTCAGTAAGAGTCATCAGGAGAATGTATCTACTGGAAGTAAATGGCT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCAGTAAGAGTCATCAGGAGAATGTATCTACTGGAAGTAAATGGCT  346

seq1  ATATTACAAATAGAGAAACAGGTTTTTAATTCTTCCTGTGGCCCTTAAAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACAAATAGAGAAACAGGTTTTTAATTCTTCCTGTGGCCCTTAAAG  396

seq1  GCTCTAGTCTGGGACTTAGTAGAATGTTATCAACTACGTATTAGCTATGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGTCTGGGACTTAGTAGAATGTTATCAACTACGTATTAGCTATGA  446

seq1  ATATATAAGAAATGCACAGATCTTGGAATGTACCATGAATTTATTTGTAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAAGAAATGCACAGATCTTGGAATGTACCATGAATTTATTTGTAG  496

seq1  CTGAGAGATGTTTTTCCATTAATGGGGATATAAAAACATCAAGATGGCTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGATGTTTTTCCATTAATGGGGATATAAAAACATCAAGATGGCTT  546

seq1  TTAGTATTTCTTGCCTGTGCAAATTAATGGAATTTGTTATATTTCCAGAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATTTCTTGCCTGTGCAAATTAATGGAATTTGTTATATTTCCAGAC  596

seq1  AGCCATACAACTTGCATCAATTACATCTATGCATTCTTTCACTTGAAACA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATACAACTTGCATCAATTACATCTATGCATTCTTTCACTTGAAACA  646

seq1  TCTACAGCCCCTGGGTGGTGTAGAAATTTCCTCTGACACTAAAACATTAC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGCCCCTGGGTGGTGTAGAAATTTCCTCTGACACTAAAACATTAC  696

seq1  ATCTGGGGGAAGTGTTCTTAAGACTCAGAAAGTTAGGAAAACTTACAAGC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGGGAAGTGTTCTTAAGACTCAGAAAGTTAGGAAAACTTACAAGC  746

seq1  CTCAGGAAGTCAACACATTCAAGTTTCTGGAAGTTCCTGCTTTTCTTATG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAAGTCAACACATTCAAGTTTCTGGAAGTTCCTGCTTTTCTTATG  796

seq1  GGGTAAACTGTTTGTTGGTGCAGCTGTACAAGTAGTCACAATTCCCCTAT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAACTGTTTGTTGGTGCAGCTGTACAAGTAGTCACAATTCCCCTAT  846

seq1  AAATGAATCCCTCACCCAGATTCCTTCAATGTGCTCACTGACTCACTCAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATCCCTCACCCAGATTCCTTCAATGTGCTCACTGACTCACTCAG  896

seq1  CTCTACTAAGGTGGAAGCATTCCTCTTGTCTGTGATTGGTGCCCATATTG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTAAGGTGGAAGCATTCCTCTTGTCTGTGATTGGTGCCCATATTG  946

seq1  GTTTATGTCTCCCCAGAAAACCACATAACACTCTACCAATCCCTCTCATA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGTCTCCCCAGAAAACCACATAACACTCTACCAATCCCTCTCATA  996

seq1  CTTTGAAGTCCATGTATTTATTTGTTTATGTTTCTTTTATAATTTTTACA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAGTCCATGTATTTATTTGTTTATGTTTCTTTTATAATTTTTACA  1046

seq1  TGGGACAGAAAACACATGATGACTGTCTCCCTCCTTCTACCTTATTTTAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAGAAAACACATGATGACTGTCTCCCTCCTTCTACCTTATTTTAA  1096

seq1  CATGTCCTCCACTTGTATCTGTTCTTCTACGAAGAAAGAATTC  1134
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCTCCACTTGTATCTGTTCTTCTACGAAGAAAGAATTC  1139