BAC Information

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BAC

Clone NameB6Ng01-293O13
Chromosome9 (Build37)
Map Location 99,144,875 - 99,307,426
singlet/doubletdoublet
Overlap geneCep70, D9Ertd280e, Mras
Upstream geneLOC667298, Nmnat3, Rbp1, Rbp2, 4930579K19Rik, Copb2, Mrps22, EG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459
Downstream geneLOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14, LOC667456, 4930519F24Rik, LOC100040590
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293O13.bB6Ng01-293O13.g
ACCGA090174GA090175
length1,030917
definitionB6Ng01-293O13.b B6Ng01-293O13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,306,412 - 99,307,426)(99,144,875 - 99,145,788)
sequence
gaattcttattctgtcagttattaagaggggagtgctgcatgtcaggctg
cgattgtatatttttctgttttctaccagggttttcctggtgcattttta
aaaagtactctgttgttaaatgcataaacacttagagctgatttatcttc
tcgacgactggccctctaggcctattaaagtggctctcatcattcctgac
ttcacactgcctgcatgcgctgcaccttaaaactgtgaggaccttgaggt
aggcactccgttccttaggaccatgcttctcggaagggatgcatgctgtg
gcatgagaagcatcttacagaaaacacaccaaccagcctttggggccttg
tcggcagcctgggattatgatccgtttcactgggtgacaggtagacacat
atgtccctactcagaaagttgcatgtgatcgtctttcttctagcatgttc
ttcctgaagaagaacataattcattaagatcctgtcttttttttttaagg
caggtctcctgtgtggcatgctggctttgagcccactgtgcagctgtggt
tgaacttgagtctctgatccccctgtctctgcctcctgagttctaggata
gtatgcgtacgccaggccttctgccatggtagacaagcaccttaccataa
actgagctacatccacaacctattaaatgtcacattatttgtaaggtctt
ccatgaccaagacaactacactagtatttacttacccctgttattcctgt
cagtaaatactttttaaactgaacaatgtatatgcagtaacaggctcaat
agattagctacattaatctctttgccttcctaattcttagtaaagaatat
acatgtaactattagaaaatttatacttatgcacattttccttccttcct
tccttcctttcatccttccttccttccttccttccttccttcttccctct
ctccctccctcccttctcccctccctccgtcttccttctgtctccacttt
ctcattcttcctcacgcccttctgcctgaa
gaattcctgatcctccaacctctgaaatgctggggttacagctaaacacc
accacacccagctattatatttatgggggttttgtttttttttttttttt
tgtttttgttttttgttttttgaggcaagatttctttatgtagccttggc
tgtcctggaactagctctctagacccagctcacctagaactcacagagat
cctcctgcctctgcctcctgagtgcacaccaccattgcctggctataaaa
ttttagtatgtgttgtattttaacagatcctcagatacctacagggcaat
taatgaactgttgtgaaacatggatggactgtgtcaaaatatacactttt
ccccccatgatggctgtcacttgtactcacactcccagggctgagaggga
tgggttgcctaggctagttctaggtcagccaaggttctgtttcaaacatc
tccagtttcatctttttctcattttgtttttctcttatcttctttttctc
ttattttccttttctctcttttctttttccccaccctccttttcttgaga
caagatcttgccatgttgtccaggttgtcttggaagtcactatgtagacc
agtttggctttgaacttacaggagtccactaggatttgcttcctgagtgc
tgggaataaaggcatgcatcaccatccgccactaaacatttttaccactt
tttaattatgtgcgtgttcatgtgtacaggtactcgtggggggccgagga
gttggatctcctggagctggagtcatagtgggttgtgagctgccaggcgt
gggtgaaggggattgaactctggtccccttgtaatgggataacatgctct
tagcactgtgctgtttcatttctgtttgtttttgtttttggtttggtttt
ttgttttgttttgagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_99306412_99307426
seq2: B6Ng01-293O13.b_47_1059 (reverse)

seq1  GAGGAAGAAAGAGAAAGAGAAGAAAGAAGGAAGGAGGGAGGGAGGGGAGG  50
      ||||||||| ||||||| | ||| |||||||| || ||||||||||||| 
seq2  GAGGAAGAATGAGAAAGTGGAGACAGAAGGAA-GACGGAGGGAGGGGAGA  49

seq1  AGGGAGGGAGGGAGAGAGGGAAGAAAGGAAGGAAGGAAGGAAGGAAGGAA  100
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGGGAGGGAGGGAGAGAGGGAAG-AAGGAAGGAAGGAAGGAAGGAAGGAA  98

seq1  GGAAGAAAGGAAGGAAGGAAGGAAGGAAAATGTGCATAAGTATAAATTTT  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAAGGAAGGAAGGAAGGAAGGAAAATGTGCATAAGTATAAATTTT  148

seq1  CTAATAGTTACATGTATATTCTTTACTAAGAATTAGGAAGGCAAAGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAGTTACATGTATATTCTTTACTAAGAATTAGGAAGGCAAAGAGAT  198

seq1  TAATGTAGCTAATCTATTGAGCCTGTTACTGCATATACATTGTTCAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAGCTAATCTATTGAGCCTGTTACTGCATATACATTGTTCAGTTT  248

seq1  AAAAAGTATTTACTGACAGGAATAACAGGGGTAAGTAAATACTAGTGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTATTTACTGACAGGAATAACAGGGGTAAGTAAATACTAGTGTAG  298

seq1  TTGTCTTGGTCATGGAAGACCTTACAAATAATGTGACATTTAATAGGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTGGTCATGGAAGACCTTACAAATAATGTGACATTTAATAGGTTG  348

seq1  TGGATGTAGCTCAGTTTATGGTAAGGTGCTTGTCTACCATGGCAGAAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTAGCTCAGTTTATGGTAAGGTGCTTGTCTACCATGGCAGAAGGC  398

seq1  CTGGCGTACGCATACTATCCTAGAACTCAGGAGGCAGAGACAGGGGGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGTACGCATACTATCCTAGAACTCAGGAGGCAGAGACAGGGGGATC  448

seq1  AGAGACTCAAGTTCAACCACAGCTGCACAGTGGGCTCAAAGCCAGCATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTCAAGTTCAACCACAGCTGCACAGTGGGCTCAAAGCCAGCATGC  498

seq1  CACACAGGAGACCTGCCTTAAAAAAAAAAGACAGGATCTTAATGAATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGGAGACCTGCCTTAAAAAAAAAAGACAGGATCTTAATGAATTAT  548

seq1  GTTCTTCTTCAGGAAGAACATGCTAGAAGAAAGACGATCACATGCAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCTTCAGGAAGAACATGCTAGAAGAAAGACGATCACATGCAACTT  598

seq1  TCTGAGTAGGGACATATGTGTCTACCTGTCACCCAGTGAAACGGATCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTAGGGACATATGTGTCTACCTGTCACCCAGTGAAACGGATCATA  648

seq1  ATCCCAGGCTGCCGACAAGGCCCCAAAGGCTGGTTGGTGTGTTTTCTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGGCTGCCGACAAGGCCCCAAAGGCTGGTTGGTGTGTTTTCTGTA  698

seq1  AGATGCTTCTCATGCCACAGCATGCATCCCTTCCGAGAAGCATGGTCCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTTCTCATGCCACAGCATGCATCCCTTCCGAGAAGCATGGTCCTA  748

seq1  AGGAACGGAGTGCCTACCTCAAGGTCCTCACAGTTTTAAGGTGCAGCGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACGGAGTGCCTACCTCAAGGTCCTCACAGTTTTAAGGTGCAGCGCA  798

seq1  TGCAGGCAGTGTGAAGTCAGGAATGATGAGAGCCACTTTAATAGGCCTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCAGTGTGAAGTCAGGAATGATGAGAGCCACTTTAATAGGCCTAG  848

seq1  AGGGCCAGTCGTCGAGAAGATAAATCAGCTCTAAGTGTTTATGCATTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCAGTCGTCGAGAAGATAAATCAGCTCTAAGTGTTTATGCATTTAA  898

seq1  CAACAGAGTACTTTTTAAAAATGCACCAGGAAAACCCTGGTAGAAAACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAGTACTTTTTAAAAATGCACCAGGAAAACCCTGGTAGAAAACAG  948

seq1  AAAAATATACAATCGCAGCCTGACATGCAGCACTCCCCTCTTAATAACTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATACAATCGCAGCCTGACATGCAGCACTCCCCTCTTAATAACTG  998

seq1  ACAGAATAAGAATTC  1015
      |||||||||||||||
seq2  ACAGAATAAGAATTC  1013

seq1: chr9_99144875_99145788
seq2: B6Ng01-293O13.g_67_983

seq1  GAATTCCTGATCCTCCAACCTCTGAAATGCTGGGGTTACAGCTAAACACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCCTCCAACCTCTGAAATGCTGGGGTTACAGCTAAACACC  50

seq1  ACCACACCCAGCTATTATATTTATGGGGGTTTTG-TTTTTTTTTTTTTTT  99
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACCACACCCAGCTATTATATTTATGGGGGTTTTGTTTTTTTTTTTTTTTT  100

seq1  TGTTTTTGTTTTTTGTTTTTTGAGGCAAGATTTCTTTATGTAGCCTTGGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTTTTTTGTTTTTTGAGGCAAGATTTCTTTATGTAGCCTTGGC  150

seq1  TGTCCTGGAACTAGCTCTCTAGACCCAGCTCACCTAGAACTCACAGAGAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAACTAGCTCTCTAGACCCAGCTCACCTAGAACTCACAGAGAT  200

seq1  CCTCCTGCCTCTGCCTCCTGAGTGCACACCACCATTGCCTGGCTATAAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGCCTCTGCCTCCTGAGTGCACACCACCATTGCCTGGCTATAAAA  250

seq1  TTTTAGTATGTGTTGTATTTTAACAGATCCTCAGATACCTACAGGGCAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTATGTGTTGTATTTTAACAGATCCTCAGATACCTACAGGGCAAT  300

seq1  TAATGAACTGTTGTGAAACATGGATGGACTGTGTCAAAATATACACTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAACTGTTGTGAAACATGGATGGACTGTGTCAAAATATACACTTTT  350

seq1  CCCCCCATGATGGCTGTCACTTGTACTCACACTCCCAGGGCTGAGAGGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCATGATGGCTGTCACTTGTACTCACACTCCCAGGGCTGAGAGGGA  400

seq1  TGGGTTGCCTAGGCTAGTTCTAGGTCAGCCAAGGTTCTGTTTCAAACATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGCCTAGGCTAGTTCTAGGTCAGCCAAGGTTCTGTTTCAAACATC  450

seq1  TCCAGTTTCATCTTTTTCTCATTTTGTTTTTCTCTTATCTTCTTTTTCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTTCATCTTTTTCTCATTTTGTTTTTCTCTTATCTTCTTTTTCTC  500

seq1  TTATTTTCCTTTTCTCTCTTTTCTTTTTCCCCACCCTCCTTTTCTTGAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCCTTTTCTCTCTTTTCTTTTTCCCCACCCTCCTTTTCTTGAGA  550

seq1  CAAGATCTTGCCATGTTGTCCAGGTTGTCTTGGAAGTCACTATGTAGACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCTTGCCATGTTGTCCAGGTTGTCTTGGAAGTCACTATGTAGACC  600

seq1  AGTTTGGCTTTGAACTTACAGGAGTCCACTAGGATTTGCTTCCTGAGTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGCTTTGAACTTACAGGAGTCCACTAGGATTTGCTTCCTGAGTGC  650

seq1  TGGGAATAAAGGCATGCATCACCATCCGCCACTAAACATTTTTACCAC-T  698
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGGGAATAAAGGCATGCATCACCATCCGCCACTAAACATTTTTACCACTT  700

seq1  TTTAATTATGTGCGTGTTCATGTGTACAGGTACTCGT-GGGGGCCGAGGA  747
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTAATTATGTGCGTGTTCATGTGTACAGGTACTCGTGGGGGGCCGAGGA  750

seq1  GTTGGATCTCCTGGAGCTGGAGTCATAGGTGGTTGTGAGCTGCCAGGCGT  797
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  GTTGGATCTCCTGGAGCTGGAGTCATAGTGGGTTGTGAGCTGCCAGGCGT  800

seq1  GGGTGAAGGGGATTGAACTCTGGTCCCC-TGTAA-GGGATAACATGCTCT  845
      |||||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  GGGTGAAGGGGATTGAACTCTGGTCCCCTTGTAATGGGATAACATGCTCT  850

seq1  TAGCACTGTGCTGTTTCATTTCTGTTTGTTTTTGTTTTGGTTTTGGTTTT  895
      |||||||||||||||||||||||||||||||||||||| | |||||||||
seq2  TAGCACTGTGCTGTTTCATTTCTGTTTGTTTTTGTTTTTGGTTTGGTTTT  900

seq1  TTTGTTTTTGTTTTGAGAC  914
      ||   ||||||||||||||
seq2  TT--GTTTTGTTTTGAGAC  917