BAC Information

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BAC

Clone NameB6Ng01-294I18
Chromosome9 (Build37)
Map Location 43,278,252 - 43,426,653
singlet/doubletdoublet
Overlap genenone
Upstream geneTbcel, Grik4, Arhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29
Downstream geneLOC384931, Pvrl1, LOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294I18.bB6Ng01-294I18.g
ACCGA090646GA090647
length1,160902
definitionB6Ng01-294I18.b B6Ng01-294I18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,278,252 - 43,279,421)(43,425,752 - 43,426,653)
sequence
gaattcaaatgcacagcttctaggagaagttctgctctctctcacactgc
tggttgagaagtggctctcagctacccaaggtgcagaacagctaggaggg
actagggtaagaaggaggagagaggatgctttgtcttccttctctccctc
cttctctgtctctcgctctgccttcaactggggaacctgctgatctctct
ccagactgtacaagccctgtgtcatggctggggacggttgtcctcagggt
atggccaccggaggatgggtcctgttctttcagagacactggattcagga
taagtaagagtggccatcaaaacacatgagaccctcacaagggtcaccct
gggctgagcagtgtaacggaagtggagacactacaggcctaggcccatgc
actatgcatgtggccccttagcttggacacaggacacaggcagcagatga
ctgtgagagcactggggaccttacttttaaatccttgcctgattggccac
agttatcaccctcacatcagtgagaatacaaggctccagaagtcaaggtc
atgtacgtggtagctgtagattcggtgtttgagacaagggtctgtgtcaa
ccctagagtttctactgaaaacctttggggactttctcttacagtctgct
aagcactttgaagatataagctcacacaatctttctctggctggagataa
gaaaactgacattgagataggttcatactttgccacatgtgacataaatc
tcaagccagggccagccgcaaagccatatgcttttaacctgtgagccact
acctatttcaaatggatacccacattaatgggaaagtgggcttcaaaatt
gccagaagagctttgaaaaactttcattttcatctcccggagattctgag
aaggttgttgaattgaggaatcagagttgggctagctgtcctttctgtgt
ttgggttgggtgcacatgtatgtgtgcacatgttgacagggtgcaacatc
agtattgtccttagcgccatccacctatttttttgagcttcttctcattg
tctgagctagttgactgctcgaaaggcctcagatcagctgctttcagctt
ttccaattcactgagatacagagcaatgcatcatactgatgtttaatggt
ctttctgggg
gaattctagaccagccagaggtacagagtgagaccctgtcaagacagaca
aacagacagacagacagacagacaacagaacaacaacgacaacaagatga
gaacagcttactgtcatactgcagaggactccccttttgagagcaggaca
atggatggtcacactctgtgactttgatctttgactgtaacctctgatca
agctactggggtgctggggaagtccattcctgtccacagactccgtggag
gaggaagcagttcttctctcatgctgagcctagaggagtggggcctgagc
tgacctgcctcctgcccagggtgagctctacagctgatgccttcccccac
tttacggctcacatcccattgcctccttttctccttcccctcttccttct
tccgtctcccttcatttctttcctcctcctccgtttccccttctctcttt
ctctttcctctctctctcttcccctctccttctctttctccccttcctcc
tccaggcagccacatcagcaaaataatgaggttgcccaactggcagtgcg
catgccatcagggtgtagaatgaagacggatgactgtagctaagagacaa
tttgaaaagggataaatacaggcaacaagttattcactacggcaatttgt
aaagagcgttaagaacctgcagatgggttgtttcacatcatctccttttc
catttgcagcctgacaggcccgggtaaacgacagtgatggatggctttga
gcagggccccttaatctaccgctctgccattgattagtttggctcgcact
gcacctcggggtggtagacgtgacctgtctctcccagaatctatagctta
agctgggcttttggacctggggaagagtgcttgggaatgggggttggggg
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_43278252_43279421
seq2: B6Ng01-294I18.b_47_1206

seq1  GAATTCAAATGCACAGCTTCTAGGAGAAGTTCTGCTCTCTCTCACACTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGCACAGCTTCTAGGAGAAGTTCTGCTCTCTCTCACACTGC  50

seq1  TGGTTGAGAAGTGGCTCTCAGCTACCCAAGGTGCAGAACAGCTAGGAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGAGAAGTGGCTCTCAGCTACCCAAGGTGCAGAACAGCTAGGAGGG  100

seq1  ACTAGGGTAAGAAGGAGGAGAGAGGATGCTTTGTCTTCCTTCTCTCCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGTAAGAAGGAGGAGAGAGGATGCTTTGTCTTCCTTCTCTCCCTC  150

seq1  CTTCTCTGTCTCTCGCTCTGCCTTCAACTGGGGAACCTGCTGATCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGTCTCTCGCTCTGCCTTCAACTGGGGAACCTGCTGATCTCTCT  200

seq1  CCAGACTGTACAAGCCCTGTGTCATGGCTGGGGACGGTTGTCCTCAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTGTACAAGCCCTGTGTCATGGCTGGGGACGGTTGTCCTCAGGGT  250

seq1  ATGGCCACCGGAGGATGGGTCCTGTTCTTTCAGAGACACTGGATTCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCACCGGAGGATGGGTCCTGTTCTTTCAGAGACACTGGATTCAGGA  300

seq1  TAAGTAAGAGTGGCCATCAAAACACATGAGACCCTCACAAGGGTCACCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAGAGTGGCCATCAAAACACATGAGACCCTCACAAGGGTCACCCT  350

seq1  GGGCTGAGCAGTGTAACGGAAGTGGAGACACTACAGGCCTAGGCCCATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAGCAGTGTAACGGAAGTGGAGACACTACAGGCCTAGGCCCATGC  400

seq1  ACTATGCATGTGGCCCCTTAGCTTGGACACAGGACACAGGCAGCAGATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCATGTGGCCCCTTAGCTTGGACACAGGACACAGGCAGCAGATGA  450

seq1  CTGTGAGAGCACTGGGGACCTTACTTTTAAATCCTTGCCTGATTGGCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGAGCACTGGGGACCTTACTTTTAAATCCTTGCCTGATTGGCCAC  500

seq1  AGTTATCACCCTCACATCAGTGAGAATACAAGGCTCCAGAAGTCAAGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCACCCTCACATCAGTGAGAATACAAGGCTCCAGAAGTCAAGGTC  550

seq1  ATGTACGTGGTAGCTGTAGATTCGGTGTTTGAGACAAGGGTCTGTGTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACGTGGTAGCTGTAGATTCGGTGTTTGAGACAAGGGTCTGTGTCAA  600

seq1  CCCTAGAGTTTCTACTGAAAACCTTTGGGGACTTTCTCTTACAGTCTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGAGTTTCTACTGAAAACCTTTGGGGACTTTCTCTTACAGTCTGCT  650

seq1  AAGCACTTTGAAGATATAAGCTCACACAATCTTTCTCTGGCTGGAGATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTTTGAAGATATAAGCTCACACAATCTTTCTCTGGCTGGAGATAA  700

seq1  GAAAACTGACATTGAGATAGGTTCATACTTTGCCACATGTGACATAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTGACATTGAGATAGGTTCATACTTTGCCACATGTGACATAAATC  750

seq1  TCAAGCCAGGGCCAGCCGCAAAGCCATATGCTTTTAACCTGTGAGCCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCAGGGCCAGCCGCAAAGCCATATGCTTTTAACCTGTGAGCCACT  800

seq1  ACCTATTTCAAATGGATACCCACATTAATGGGAAAGTGGGCTTCAAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTTCAAATGGATACCCACATTAATGGGAAAGTGGGCTTCAAAATT  850

seq1  GCCAGAAGAGCTTTGAAAAACTTTCATTTTCATCT-CCGGAGATTCTGAG  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCCAGAAGAGCTTTGAAAAACTTTCATTTTCATCTCCCGGAGATTCTGAG  900

seq1  AAGGTTGTTGAATTGAGGAATCAGAGTTGGGCTAGCTGTCCTTTCTGTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGTTGAATTGAGGAATCAGAGTTGGGCTAGCTGTCCTTTCTGTGT  950

seq1  TTGGG-TGGGTGCACATGTATGTGTGCACATGTTGACAGGGGTGCAACAT  998
      ||||| |||||||||||||||||||||||||||||||| |||||||||||
seq2  TTGGGTTGGGTGCACATGTATGTGTGCACATGTTGACA-GGGTGCAACAT  999

seq1  CAGGTATTGTCCTTAGGCGCCATCCACCTTATTTTTTTTGAGCTTC-TCT  1047
      || |||||||||||| |||||||||||||   |||||||||||||| |||
seq2  CA-GTATTGTCCTTA-GCGCCATCCACCT--ATTTTTTTGAGCTTCTTCT  1045

seq1  CATTGGTCTGGAGCTAGGTTGACTGGCTCGAAA-GCCTCAGGGATCAGCC  1096
      |||| |||| |||||| ||||||| |||||||| ||||||  |||||| |
seq2  CATT-GTCT-GAGCTA-GTTGACT-GCTCGAAAGGCCTCA--GATCAG-C  1088

seq1  TGC-CTCAGCTTTCCCAA-TCACTGAGATTACAAGAGCATGCCATCATAC  1144
      |||  |||||||| |||| ||||||||| ||| ||||||   ||||||| 
seq2  TGCTTTCAGCTTTTCCAATTCACTGAGA-TAC-AGAGCAATGCATCATA-  1135

seq1  CTGATGTTTAAATGTGCTTTCTGGGG  1170
      ||||||||| ||||  ||||||||||
seq2  CTGATGTTT-AATGGTCTTTCTGGGG  1160

seq1: chr9_43425752_43426653
seq2: B6Ng01-294I18.g_64_965 (reverse)

seq1  CCCCCCCAACCCCCATTCCCAAGCACTCTTCCCCAGGTCCAAAAGCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCAACCCCCATTCCCAAGCACTCTTCCCCAGGTCCAAAAGCCCAG  50

seq1  CTTAAGCTATAGATTCTGGGAGAGACAGGTCACGTCTACCACCCCGAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGCTATAGATTCTGGGAGAGACAGGTCACGTCTACCACCCCGAGGT  100

seq1  GCAGTGCGAGCCAAACTAATCAATGGCAGAGCGGTAGATTAAGGGGCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCGAGCCAAACTAATCAATGGCAGAGCGGTAGATTAAGGGGCCCT  150

seq1  GCTCAAAGCCATCCATCACTGTCGTTTACCCGGGCCTGTCAGGCTGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAAGCCATCCATCACTGTCGTTTACCCGGGCCTGTCAGGCTGCAAA  200

seq1  TGGAAAAGGAGATGATGTGAAACAACCCATCTGCAGGTTCTTAACGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAGGAGATGATGTGAAACAACCCATCTGCAGGTTCTTAACGCTCT  250

seq1  TTACAAATTGCCGTAGTGAATAACTTGTTGCCTGTATTTATCCCTTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATTGCCGTAGTGAATAACTTGTTGCCTGTATTTATCCCTTTTCA  300

seq1  AATTGTCTCTTAGCTACAGTCATCCGTCTTCATTCTACACCCTGATGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCTCTTAGCTACAGTCATCCGTCTTCATTCTACACCCTGATGGCA  350

seq1  TGCGCACTGCCAGTTGGGCAACCTCATTATTTTGCTGATGTGGCTGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCACTGCCAGTTGGGCAACCTCATTATTTTGCTGATGTGGCTGCCTG  400

seq1  GAGGAGGAAGGGGAGAAAGAGAAGGAGAGGGGAAGAGAGAGAGAGGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGAAGGGGAGAAAGAGAAGGAGAGGGGAAGAGAGAGAGAGGAAAG  450

seq1  AGAAAGAGAGAAGGGGAAACGGAGGAGGAGGAAAGAAATGAAGGGAGACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGAGAAGGGGAAACGGAGGAGGAGGAAAGAAATGAAGGGAGACG  500

seq1  GAAGAAGGAAGAGGGGAAGGAGAAAAGGAGGCAATGGGATGTGAGCCGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGAAGAGGGGAAGGAGAAAAGGAGGCAATGGGATGTGAGCCGTA  550

seq1  AAGTGGGGGAAGGCATCAGCTGTAGAGCTCACCCTGGGCAGGAGGCAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGGGAAGGCATCAGCTGTAGAGCTCACCCTGGGCAGGAGGCAGGT  600

seq1  CAGCTCAGGCCCCACTCCTCTAGGCTCAGCATGAGAGAAGAACTGCTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGGCCCCACTCCTCTAGGCTCAGCATGAGAGAAGAACTGCTTCC  650

seq1  TCCTCCACGGAGTCTGTGGACAGGAATGGACTTCCCCAGCACCCCAGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCACGGAGTCTGTGGACAGGAATGGACTTCCCCAGCACCCCAGTAG  700

seq1  CTTGATCAGAGGTTACAGTCAAAGATCAAAGTCACAGAGTGTGACCATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCAGAGGTTACAGTCAAAGATCAAAGTCACAGAGTGTGACCATCC  750

seq1  ATTGTCCTGCTCTCAAAAGGGGAGTCCTCTGCAGTATGACAGTAAGCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCTGCTCTCAAAAGGGGAGTCCTCTGCAGTATGACAGTAAGCTGT  800

seq1  TCTCATCTTGTTGTCGTTGTTGTTCTGTTGTCTGTCTGTCTGTCTGTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCTTGTTGTCGTTGTTGTTCTGTTGTCTGTCTGTCTGTCTGTCTG  850

seq1  TTTGTCTGTCTTGACAGGGTCTCACTCTGTACCTCTGGCTGGTCTAGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGTCTTGACAGGGTCTCACTCTGTACCTCTGGCTGGTCTAGAAT  900

seq1  TC  902
      ||
seq2  TC  902