BAC Information

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BAC

Clone NameB6Ng01-295C20
Chromosome9 (Build37)
Map Location 4,228,714 - 4,229,809
singlet/doubletsinglet
Overlap geneLOC100039253
Upstream geneOlfr369-ps1, Alkbh8, Cwf19l2, LOC384911, Gucy1a2, LOC100039236, LOC384912
Downstream geneAasdhppt, Kbtbd3, LOC664860, 8430410K20Rik, Gria4, EG664889
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295C20.bB6Ng01-295C20.g
ACCGA091113GA091114
length1,2141,094
definitionB6Ng01-295C20.b B6Ng01-295C20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccacttcaacatgacctaattagccagtactgcttcaaacataga
gttggacatagggcagctcgatttagacatatttatatacagtaaaattt
tgggaaaaagtttcctgctaatcattatttcaatcccttgtgcacaataa
aggttaaggtatggctacagaaaaatcacttttttgcaaagtacatgtgg
ctctacaatgcagatagttttctatatcttaggagcatacatatggtgtg
gtccccatcatattgatgaggtagaggtcacaaatctataaagaacatat
gacatctcccttaaggatgggttctattgactgaaaagcaatgttcaaga
taaagtctagtgagaaaaaaacttgggataaacatagcctaggagactca
ggtatggctaggtcctacagatagcaatggtaaccaggttaactacaccc
actttcagctttctgaggtggaaaatatacacatcccttttgttgacgag
acaagcctggtacttaatatttctggttttcccagtgtttatctgtgagc
acaaagaccttatgtgttttacaagtcctttcaagtcccaaatagaatca
ttatctggggaccaaggattcaacatataagtctatggatgacagctata
tgaaaatagcataggcctagcattccttgagaaagagttcatcagccgct
aatcccgtgtatttgcaaagaggttctgtttttattatctctggacatgg
atacttactgtgttttttctgtagcagagggaatttctaaaacctttcca
caaaaatgctacattctcaataatgagacctatcatggttgcatatcagc
ctagaacatgtacaaagagttaagaagagaagagtcttgacgtccacttt
tctgttttatttctgataatgatagaatatatttttgttacacatttcaa
taaattaacattttacagaactgtgatgttttactatataataaggttaa
tccaaacctgaaaaaaatgttcatttttatttcccgttattttcttcccc
cactccctcatttttattttctcatagcatatgggcagagccccacattt
tcattatcagaagaaagcaaattaggtaacctggtgtataggccacttgg
ggaacttaacccagttgaaaaatatcactgaaggccaattaccaccttat
agaaaaaaattgcg
gaattcttaagcttgtgttcatgcctgctataaatgccttttttccccct
atcaatggccctttattcagtcattctttacaactgaaactctgggaatt
aaaaattaacatctttgcctgtgcgcttcttgtacacgccagaaaacgtt
ttgacctcgtgttctatgttgttctgctgtgctttgtgtgaatgaactat
cataagccagctgctatacagtttcacacggatcctcttacccacaattt
cacttgggaagaccaagtcctcaaggatggcatcatgcactgctgtcagg
gtgcggcttctagggcgcctttgcttatttttcgtacgcttttccgggtt
ggcgtgggcgtgcttcccgctgaactttttctccagttcatgaactaggc
agatttggattttctgaattaactggtaaggaagaagccatgttcagctt
gagcgccaaattttgaagcccaatggtgaaaagctgcgagctcgagtctg
gctactttcaggtgctgctcgagctggagatgaacgctgatctcaaggct
cagctgtgggaacttaacagcaccgcagccaagaaaattaaagctggtgg
tggtcggaaagctataataaatgccattttctacataacacaaatgtctc
caacttgtcttttgagaactaagactgtaaagcagttttatatttcccat
ggtgctttatgaaacattggctatattagagagttaaatatgtgtcatag
tgaagtgagagaacgactagaacatatgttcttagattgtatttgaaata
cattgaagtccctttgggtgttggtgaacattgcaatggaggctttgtca
ccacccaacaactcctgcagaaccaaaggcactattttctccatttgagt
gtattagttctcagtggtagatgctacccttattcaaggtatatataact
tgctactgggctcattcggcatctagtaacaggctcaggtggtgctcaag
gcttgccctccataggagattgagaccactgtgaattagttacattgcac
tgatcatatttcagcttctgcctctgtcagtactgaacaagctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_4228714_4229809
seq2: B6Ng01-295C20.g_67_1160

seq1  GAATTCTTAAGCTTGTGTTCATGCCTGCTATAAATGCCTTTTTTCCCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGCTTGTGTTCATGCCTGCTATAAATGCCTTTTTTCCCCCT  50

seq1  ATCAATGGCCCTTTATTCAGTCATTCTTTACAACTGAAACTCTGGGAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGGCCCTTTATTCAGTCATTCTTTACAACTGAAACTCTGGGAATT  100

seq1  AAAAATTAACATCTTTGCCTGTGCGCTTCTTGTACACGCCAGAAAACGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAACATCTTTGCCTGTGCGCTTCTTGTACACGCCAGAAAACGTT  150

seq1  TTGACCTCGTGTTCTATGTTGTTCTGCTGTGCTTTGTGTGAATGAACTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTCGTGTTCTATGTTGTTCTGCTGTGCTTTGTGTGAATGAACTAT  200

seq1  CATAAGCCAGCTGCTATACAGTTTCACACGGATCCTCTTACCCACAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCCAGCTGCTATACAGTTTCACACGGATCCTCTTACCCACAATTT  250

seq1  CACTTGGGAAGACCAAGTCCTCAAGGATGGCATCATGCACTGCTGTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGGAAGACCAAGTCCTCAAGGATGGCATCATGCACTGCTGTCAGG  300

seq1  GTGCGGCTTCTAGGGCGCCTTTGCTTATTTTTCGTACGCTTTTCCGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGGCTTCTAGGGCGCCTTTGCTTATTTTTCGTACGCTTTTCCGGGTT  350

seq1  GGCGTGGGCGTGCTTCCCGCTGAACTTTTTCTCCAGTTCATGAACTAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGGGCGTGCTTCCCGCTGAACTTTTTCTCCAGTTCATGAACTAGGC  400

seq1  AGATTTGGATTTTCTGAATTAACTGGTAAGGAAGAAGCCATGTTCAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGGATTTTCTGAATTAACTGGTAAGGAAGAAGCCATGTTCAGCTT  450

seq1  GAGCGCCAAATTTTGAAGCCCAATGGTGAAAAGCTGCGAGCTCGAGTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCCAAATTTTGAAGCCCAATGGTGAAAAGCTGCGAGCTCGAGTCTG  500

seq1  GCTACTTTCAGGTGCTGCTCGAGCTGGAGATGAACGCTGATCTCAAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTTCAGGTGCTGCTCGAGCTGGAGATGAACGCTGATCTCAAGGCT  550

seq1  CAGCTGTGGGAACTTAACAGCACCGCAGCCAAGAAAATTAAAGCTGGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTGGGAACTTAACAGCACCGCAGCCAAGAAAATTAAAGCTGGTGG  600

seq1  TGGTCGGAAAGCTATAATAAATGCCATTTTCTACATAACACAAATGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCGGAAAGCTATAATAAATGCCATTTTCTACATAACACAAATGTCTC  650

seq1  CAACTTGTCTTTTGAGAACTAAGACTGTAAAGCAGTTTTATATTTCCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGTCTTTTGAGAACTAAGACTGTAAAGCAGTTTTATATTTCCCAT  700

seq1  GGTGCTTTATGAAACATTGGCTATATTAGAGAGTTAAATATGTGTCATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTTATGAAACATTGGCTATATTAGAGAGTTAAATATGTGTCATAG  750

seq1  TGAAGTGAGAGAACGACTAGAACATATGTTCTTAGATTGTATTTGAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGAGAGAACGACTAGAACATATGTTCTTAGATTGTATTTGAAATA  800

seq1  CATTGAAGTCCCTTTGGGTGTTGGTGAACATTGCAATGGAGGCTTTGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAGTCCCTTTGGGTGTTGGTGAACATTGCAATGGAGGCTTTGTCA  850

seq1  CCACCCAACAACTCCTGCAGAACC-AAGGCACTATTTTCTCCATTTGAGT  899
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCACCCAACAACTCCTGCAGAACCAAAGGCACTATTTTCTCCATTTGAGT  900

seq1  GTATTAGTTCTCAGTGGTAGATGCTA-CCTTATTCAAGGTATATATAACT  948
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTATTAGTTCTCAGTGGTAGATGCTACCCTTATTCAAGGTATATATAACT  950

seq1  TGCTACTGGGCTCATTCGGCATCTAGTAACAGGCTCAGGTGGTGCTCAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTGGGCTCATTCGGCATCTAGTAACAGGCTCAGGTGGTGCTCAAG  1000

seq1  GCTTGCCCTCCATAGGAAGATTGAGACACCTGTGAATTAGTTTACATTGC  1048
      |||||||||||||||| ||||||||||  ||||||||||| |||||||||
seq2  GCTTGCCCTCCATAGG-AGATTGAGACCACTGTGAATTAG-TTACATTGC  1048

seq1  AACTGAATCATATTTCAGCTTCTGCCTCTGTCCAGTACTG-ACAAGCTT  1096
       |||| ||||||||||||||||||||||||| |||||||| ||||||||
seq2  -ACTG-ATCATATTTCAGCTTCTGCCTCTGT-CAGTACTGAACAAGCTT  1094