BAC Information

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BAC

Clone NameB6Ng01-295J22
Chromosome9 (Build37)
Map Location 108,463,077 - 108,618,818
singlet/doubletdoublet
Overlap geneImpdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a
Upstream geneRassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1
Downstream geneIhpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295J22.bB6Ng01-295J22.g
ACCGA091440GA091441
length7941,026
definitionB6Ng01-295J22.b B6Ng01-295J22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,618,027 - 108,618,818)(108,463,077 - 108,464,091)
sequence
gaattcatccgtcttccaccttcccagctctgacatagatgtgtgctgcc
acacttaaaacttttatgtgggtgccagggcgcatcagttcctcaaacgt
acattacaagcaagcgccaggctagccatcaccccaactcccttcctctt
tttataaggacaaaagtcctgtttttgttgacccttcataaccctttcac
aggctgtgttcctattacacaggtatggcttcaatgtgtaggtctggtgg
ggaggcataattcagttgtgactgggtttctaaaggatactgagcgactg
ttagtgacatattattttagaacactgtaaacatgtaagcttacatggca
gtgctatttagtagataatcacttaacataaataactagggcaggaggga
cggctcagtggttaagagatgaggctgctatctcagaggtcctgcattca
attcccagcaaccagtgggtggctcacaaccatctgtaatgggatttgat
ggcctcttctgtatgcaggtatacatgaagatagagccctcatatacaca
agtaaatgaataatctttaaaaataaataaataaataaatagctgacaca
gtaccagattcccaatgaactagcctgtcagtcatcagcagtcaaaactc
actgcatagacacacagatgttaacaaacatctctgcttaatgtatttta
aagcctcaacctatatgtgaagtctgttttctttcccttttatttttttt
aatttaatttaattttatttttggttttctctgtgtttgccctg
gaattccttatcgccgaagactaacttcgacatatgtgaagcaggggcag
gggtttagagggtgatttcaatagtatttaatacttgagtcgtgagacac
agttctctggatatgtggaatatgttagcgtgcactaatgacacctcggt
ggcatccacccagtgacattttgcctgtgtcacacttgctggtacaactc
cctgctcaagagttttatgggatgatatatggagttgaagtttcttggtg
tcacaagcctgagagacctgcttatttccctcctacagtgattttctcat
tcttcctgggtatatcgacttcactgcagatcaggtggtgagtaataagg
cactggatttttggtttggggggttccttttttttttttttttttttctg
agacagggtttctctgtatagccctggctgtcctggaactcactctgtag
accaggctggccttgaactcagaaatccgcctgcctctgcctcccaagtg
ctgggattaaaggcgtgcgctacttctgcctggctctattttgtttttga
gacagcctgcctacattactttggctgttccagaagtggttttgttgacc
ctaattattagtgtcaacgctcagtcttgtttctgagtgggtactgttat
tacagtaggcatgtgcccctgtacccactctaggaactggattggtaaat
atctaggaggggtaagatgctgctgttcgttactgtgagcttactgcacc
aggctaggctttgtggtgaacatggcagctcacccagggctcctgggatg
gaccctgaggaataaagctgtatttttcttttgctggtcctttttcttct
tcaggacttggacgtctgctcctaactaaggaaagattacactaaagacc
catttggtttcctcacccatgggacactgttcacagaaggcttggaatgg
ccatcgcgatggcgtaagccttgagcgccatgggtgccatctataagcca
aagattgtgtttctgtatttatcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_108618027_108618818
seq2: B6Ng01-295J22.b_48_841 (reverse)

seq1  CAGGGC-AACACAGAGAAAACCAAAAATAAAATTAAATTAAATT-AAAAA  48
      |||||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  CAGGGCAAACACAGAGAAAACCAAAAATAAAATTAAATTAAATTAAAAAA  50

seq1  AATAAAAGGGAAAGAAAACAGACTTCACATATAGGTTGAGGCTTTAAAAT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGGGAAAGAAAACAGACTTCACATATAGGTTGAGGCTTTAAAAT  100

seq1  ACATTAAGCAGAGATGTTTGTTAACATCTGTGTGTCTATGCAGTGAGTTT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAGCAGAGATGTTTGTTAACATCTGTGTGTCTATGCAGTGAGTTT  150

seq1  TGACTGCTGATGACTGACAGGCTAGTTCATTGGGAATCTGGTACTGTGTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCTGATGACTGACAGGCTAGTTCATTGGGAATCTGGTACTGTGTC  200

seq1  AGCTATTTATTTATTTATTTATTTTTAAAGATTATTCATTTACTTGTGTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTTATTTATTTATTTATTTTTAAAGATTATTCATTTACTTGTGTA  250

seq1  TATGAGGGCTCTATCTTCATGTATACCTGCATACAGAAGAGGCCATCAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGGCTCTATCTTCATGTATACCTGCATACAGAAGAGGCCATCAAA  300

seq1  TCCCATTACAGATGGTTGTGAGCCACCCACTGGTTGCTGGGAATTGAATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTACAGATGGTTGTGAGCCACCCACTGGTTGCTGGGAATTGAATG  350

seq1  CAGGACCTCTGAGATAGCAGCCTCATCTCTTAACCACTGAGCCGTCCCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCTCTGAGATAGCAGCCTCATCTCTTAACCACTGAGCCGTCCCTC  400

seq1  CTGCCCTAGTTATTTATGTTAAGTGATTATCTACTAAATAGCACTGCCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTAGTTATTTATGTTAAGTGATTATCTACTAAATAGCACTGCCAT  450

seq1  GTAAGCTTACATGTTTACAGTGTTCTAAAATAATATGTCACTAACAGTCG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTTACATGTTTACAGTGTTCTAAAATAATATGTCACTAACAGTCG  500

seq1  CTCAGTATCCTTTAGAAACCCAGTCACAACTGAATTATGCCTCCCCACCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTATCCTTTAGAAACCCAGTCACAACTGAATTATGCCTCCCCACCA  550

seq1  GACCTACACATTGAAGCCATACCTGTGTAATAGGAACACAGCCTGTGAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTACACATTGAAGCCATACCTGTGTAATAGGAACACAGCCTGTGAAA  600

seq1  GGGTTATGAAGGGTCAACAAAAACAGGACTTTTGTCCTTATAAAAAGAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATGAAGGGTCAACAAAAACAGGACTTTTGTCCTTATAAAAAGAGG  650

seq1  AAGGGAGTTGGGGTGATGGCTAGCCTGGCGCTTGCTTGTAATGTACGTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGTTGGGGTGATGGCTAGCCTGGCGCTTGCTTGTAATGTACGTTT  700

seq1  GAGGAACTGATGCGCCCTGGCACCCACATAAAAGTTTTAAGTGTGGCAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACTGATGCGCCCTGGCACCCACATAAAAGTTTTAAGTGTGGCAGC  750

seq1  ACACATCTATGTCAGAGCTGGGAAGGTGGAAGACGGATGAATTC  792
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCTATGTCAGAGCTGGGAAGGTGGAAGACGGATGAATTC  794

seq1: chr9_108463077_108464091
seq2: B6Ng01-295J22.g_67_1092

seq1  GAATTCCTTATCGCCGAAGACTAACTTCGACATATGTGAAGCAGGGGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATCGCCGAAGACTAACTTCGACATATGTGAAGCAGGGGCAG  50

seq1  GGGTTTAGAGGGTGATTTCAATAGTATTTAATACTTGAGTCGTGAGACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTAGAGGGTGATTTCAATAGTATTTAATACTTGAGTCGTGAGACAC  100

seq1  AGTTCTCTGGATATGTGGAATATGTTAGCGTGCACTAATGACACCTCGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCTGGATATGTGGAATATGTTAGCGTGCACTAATGACACCTCGGT  150

seq1  GGCATCCACCCAGTGACATTTTGCCTGTGTCACACTTGCTGGTACAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCACCCAGTGACATTTTGCCTGTGTCACACTTGCTGGTACAACTC  200

seq1  CCTGCTCAAGAGTTTTATGGGATGATATATGGAGTTGAAGTTTCTTGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCAAGAGTTTTATGGGATGATATATGGAGTTGAAGTTTCTTGGTG  250

seq1  TCACAAGCCTGAGAGACCTGCTTATTTCCCTCCTACAGTGATTTTCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGCCTGAGAGACCTGCTTATTTCCCTCCTACAGTGATTTTCTCAT  300

seq1  TCTTCCTGGGTATATCGACTTCACTGCAGATCAGGTGGTGAGTAATAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGGGTATATCGACTTCACTGCAGATCAGGTGGTGAGTAATAAGG  350

seq1  CACTGGATTTTTGGTTTGGGGGGTTCCTTTTTTTTTTTTTTTTTTTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGATTTTTGGTTTGGGGGGTTCCTTTTTTTTTTTTTTTTTTTTCTG  400

seq1  AGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAG  450

seq1  ACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTG  500

seq1  CTGGGATTAAAGGCGTGCGCTACTTCTGCCTGGCTCTATTTTGTTTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTAAAGGCGTGCGCTACTTCTGCCTGGCTCTATTTTGTTTTTGA  550

seq1  GACAGCCTGCCTACATTACTTTGGCTGTTCCAGAAGTGGTTTTGTTGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCTGCCTACATTACTTTGGCTGTTCCAGAAGTGGTTTTGTTGACC  600

seq1  CTAATTATTAGTGTCAACGCTCAGTCTTGTTTCTGAGTGGGTACTGTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTATTAGTGTCAACGCTCAGTCTTGTTTCTGAGTGGGTACTGTTAT  650

seq1  TACAGTAGGCATGTGCCCCTGTACCCACTCTAGGAACTGGATTGGTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAGGCATGTGCCCCTGTACCCACTCTAGGAACTGGATTGGTAAAT  700

seq1  ATCTAGGAGGGGTAAGATGCTGCTGTTCGTTACTGTGAGCTTACTGCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGAGGGGTAAGATGCTGCTGTTCGTTACTGTGAGCTTACTGCACC  750

seq1  AGGCTAGGCTTTGTGGTGAACATGGCAGCTCACCCAGGGCTCCTGGGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGGCTTTGTGGTGAACATGGCAGCTCACCCAGGGCTCCTGGGATG  800

seq1  GACCCTGAGGAAT-AAGCTGTA-TTTTCCTTTGCTGGTCCTTTTTC-TCC  847
      ||||||||||||| |||||||| ||||| ||||||||||||||||| || 
seq2  GACCCTGAGGAATAAAGCTGTATTTTTCTTTTGCTGGTCCTTTTTCTTCT  850

seq1  TCAGGACTT-GACGTCTGCT-CTAACTAAG--AAGATTACACTAAAGACC  893
      ||||||||| |||||||||| |||||||||  ||||||||||||||||||
seq2  TCAGGACTTGGACGTCTGCTCCTAACTAAGGAAAGATTACACTAAAGACC  900

seq1  CCATTGGTTTCCTCACCCAT-GGACACTG-TCACAG-AGGC-TGGAATGG  939
      |  ||||||||||||||||| |||||||| |||||| |||| ||||||||
seq2  CATTTGGTTTCCTCACCCATGGGACACTGTTCACAGAAGGCTTGGAATGG  950

seq1  CCATCGCGATGGCGGTAAGGCTTGAGCGCCATGGGTGCCATCTTATAGCC  989
      ||||||||||||| ||||| |||||||||||||||||||||||   ||||
seq2  CCATCGCGATGGC-GTAAGCCTTGAGCGCCATGGGTGCCATCTATAAGCC  999

seq1  AAAGATTGTGTTTCTGT-TTTATCACT  1015
      ||||||||||||||||| |||||||||
seq2  AAAGATTGTGTTTCTGTATTTATCACT  1026