BAC Information

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BAC

Clone NameB6Ng01-300G20
Chromosome9 (Build37)
Map Location 36,538,075 - 36,539,102
singlet/doubletsinglet
Overlap geneStt3a
Upstream geneD730048I06Rik, 9230110F15Rik, LOC100041605, 9230113P08Rik, EG546123, LOC100041618, LOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1
Downstream geneEi24, LOC627681, Fez1, Pknox2, LOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300G20.bB6Ng01-300G20.g
ACCGA095008GA095009
length1,2281,027
definitionB6Ng01-300G20.b B6Ng01-300G20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatgtctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgagaatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcagttcccca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgttccaaccggtaagaaggacacatgctccactat
gttcataacagccttatttataatagctggaaagaacctagatgcccctc
aacagaggaacggatacagaaaatgtggtacatttacacaatggagtact
actcagctattaaaaagaatgaatttatgaaattcctaggcaaatggatg
gacctggagggcatcatcctgagtgaggtaacccaatcacaaaagaactc
acacaatatgtactcactgataagtggatattagcccagaaacttaaaat
acccaagatataagatacaatttgctaaacacatgatactcaagaagaat
gaagaccaaagtgtggacactttgccccttcttagaattgggaacaaaac
acccatggaaggagttacagagacaaagtttggagctgagacaaaaggat
ggaccatctagagactgccatatccagggatccaccccataatcagcttc
caaacactgacactattgcatacactagcaagattttgctgaaaggaccc
agatatggctgtctcttgtgagactatgccggggcctagcaaatacagaa
gtggatgctcacagtcagctattggatggatcacagggcccccagtggag
gagctagagaaagtacccaaggagctgatggatctgcaatcctataggtg
gaacacatatgaaactaaccaatacccgccctctaccccccccccccccg
gagctcgtgttctctagctgcatatgatcaaagatggctagtcggccatc
atggaagagaggccattggttcgtgcaaccttatatgcctcagttacaga
ggaactccaggttagattggtaattggtggattgggaatggctggaccta
gcatctgatggtcagtatgacgtagcta
gaattcaaagccagccctagctataaaagatactgtctcaaaacacccaa
agttgtttaacgaataggtttgatcacagtatgagaaaatgggcacaaat
gagggagaactagctggggtggtaaggaagcaggaaagataacaagtacc
aaaaaattaaagtatttcctttaaaatatataggaaaaatagtacctaac
tagctgtagtagcccacaactgggaggtagaggcaggaagatcaagagtt
caaagctagcatcatctgtatcttgagttcaaagctggcctgagctacat
ggaacagtctttaaaaaaaaaaaaaaagtaattagaacagtaacagatga
tagtaaaaatggtgtcacaaaacatagggcagtggttctcaaccttccta
aggctgctactctttaatacagctcatcatcttgtggtgacatcccagcc
ataaaagtattttcactgtgacctcatagctaagattttgctgttatgaa
ttgcaatgtaaatactttgggagataatggtttgccaaagagaacatgac
gcacaatgttgaaagccactggttaaaaaaaaaaaaaaaaaaaagaaaga
aagaaaaaagaaatcaatgttacctcaaactaaaacaccaaaacataaca
aagcaagttactaatgatcaggcaggaggcacagtgcgaggttcaccaga
cctggaagcaagagtctctggcgagtgctggctgggtgtgtgggtgggca
tgtgtgtgaaattttattgttgcttttgaggtggatttattttttttttt
acactaagaagactacaactgaaaatgaaatcaactttaaaaatctttgt
agactagaaaatatcaagatcccaggagttcaaaatgatatgaaaagggg
gtatcccatttatactatagagaaagcttactaattacctgtaatgtatc
atattgataaggtctcaggttacctttcccactaggcagtagttctgtat
ataaatcaaatatgtatttactatagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_36538075_36539102
seq2: B6Ng01-300G20.g_64_1090

seq1  GAATTCAAAGCCAGCCCTAGCTATAAAAGATACTGTCTCAAAACACCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCCAGCCCTAGCTATAAAAGATACTGTCTCAAAACACCCAA  50

seq1  AGTTGTTTAACGAATAGGTTTGATCACAGTATGAGAAAATGGGCACAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTTAACGAATAGGTTTGATCACAGTATGAGAAAATGGGCACAAAT  100

seq1  GAGGGAGAACTAGCTGGGGTGGTAAGGAAGCAGGAAAGATAACAAGTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGAACTAGCTGGGGTGGTAAGGAAGCAGGAAAGATAACAAGTACC  150

seq1  AAAAAATTAAAGTATTTCCTTTAAAATATATAGGAAAAATAGTACCTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTAAAGTATTTCCTTTAAAATATATAGGAAAAATAGTACCTAAC  200

seq1  TAGCTGTAGTAGCCCACAACTGGGAGGTAGAGGCAGGAAGATCAAGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTAGTAGCCCACAACTGGGAGGTAGAGGCAGGAAGATCAAGAGTT  250

seq1  CAAAGCTAGCATCATCTGTATCTTGAGTTCAAAGCTGGCCTGAGCTACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTAGCATCATCTGTATCTTGAGTTCAAAGCTGGCCTGAGCTACAT  300

seq1  GGAACAGTCTTTAAAAAAAAAAAAAAAGTAATTAGAACAGTAACAGATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGTCTTTAAAAAAAAAAAAAAAGTAATTAGAACAGTAACAGATGA  350

seq1  TAGTAAAAATGGTGTCACAAAACATAGGGCAGTGGTTCTCAACCTTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAAATGGTGTCACAAAACATAGGGCAGTGGTTCTCAACCTTCCTA  400

seq1  AGGCTGCTACTCTTTAATACAGCTCATCATCTTGTGGTGACATCCCAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCTACTCTTTAATACAGCTCATCATCTTGTGGTGACATCCCAGCC  450

seq1  ATAAAAGTATTTTCACTGTGACCTCATAGCTAAGATTTTGCTGTTATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTATTTTCACTGTGACCTCATAGCTAAGATTTTGCTGTTATGAA  500

seq1  TTGCAATGTAAATACTTTGGGAGATAATGGTTTGCCAAAGAGAACATGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATGTAAATACTTTGGGAGATAATGGTTTGCCAAAGAGAACATGAC  550

seq1  GCACAATGTTGAAAGCCACTGGTTAAAAAAAAAAAAAAAAAAAAGAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAATGTTGAAAGCCACTGGTTAAAAAAAAAAAAAAAAAAAAGAAAGA  600

seq1  AAGAAAAAAGAAATCAATGTTACCTCAAACTAAAACACCAAAACATAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAGAAATCAATGTTACCTCAAACTAAAACACCAAAACATAACA  650

seq1  AAGCAAGTTACTAATGATCAGGCAGGAGGCACAGTGCGAGGTTCACCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGTTACTAATGATCAGGCAGGAGGCACAGTGCGAGGTTCACCAGA  700

seq1  CCTGGAAGCAAGAGTCTCTGGCGAGTGCTGGCTGGGTGTGTGGGTGGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAGCAAGAGTCTCTGGCGAGTGCTGGCTGGGTGTGTGGGTGGGCA  750

seq1  TGTGTGTGAAATTTTATTGTTGCTTTTGAGGTGGATTTA-TTTTTTTTTT  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGTGTGTGAAATTTTATTGTTGCTTTTGAGGTGGATTTATTTTTTTTTTT  800

seq1  ACACTAAGAAGACTACAACTGAAAATGAAATCAAC-TTAAAAATCTTTGT  848
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACACTAAGAAGACTACAACTGAAAATGAAATCAACTTTAAAAATCTTTGT  850

seq1  AGACTAGAAAATATCAAGATCCCAGGAG-TCAAAATGATATGAAAAGGGG  897
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGACTAGAAAATATCAAGATCCCAGGAGTTCAAAATGATATGAAAAGGGG  900

seq1  GTATCCCATTTATACTATAGAGAAAGCTTACTAATAACCTGTAATGTTAA  947
      ||||||||||||||||||||||||||||||||||| |||||||||||  |
seq2  GTATCCCATTTATACTATAGAGAAAGCTTACTAATTACCTGTAATGT--A  948

seq1  TCATATTGATAA-GTCTCAGGTTAACCTTTCCCACTAGGCAGTAGTTCTG  996
      |||||||||||| |||||||||| ||||||||||||||||||||||||||
seq2  TCATATTGATAAGGTCTCAGGTT-ACCTTTCCCACTAGGCAGTAGTTCTG  997

seq1  TATATAAATCAAATAATGTATTTACATATAGG  1028
      |||||||||||||| |||||||||| ||||||
seq2  TATATAAATCAAAT-ATGTATTTAC-TATAGG  1027