BAC Information

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BAC

Clone NameB6Ng01-300J17
Chromosome9 (Build37)
Map Location 38,977,799 - 39,127,444
singlet/doubletdoublet
Overlap geneOlfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948
Upstream geneOlfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1
Downstream geneLOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300J17.bB6Ng01-300J17.g
ACCGA095141GA095142
length9611,146
definitionB6Ng01-300J17.b B6Ng01-300J17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,977,799 - 38,978,366)(39,126,300 - 39,127,444)
sequence
gaattcattacatataaaaagtacaattgaatatttgcattgtttcatac
caaagcattaataatgaaggaataaagctgctagaacattttcacaattc
tttatgcagaaacctgttgtcatttgtccggaataaactctgagaaactt
gactgaaaatatgtgttcacacttattaacatggtattaagctagtttca
aagtttcaaggttctacatttagtccacaaacagttggtgtgtgttgcat
ctagctactttttgtccacatttggtattgccacagattttcaatagcca
ctatgatatacttgtatgaagatatttcattttgatttcattgatgatta
atctttcaattaattatattttatttacattccaaatattatcccctctt
ggttccccctcccagagttcttcagaacagtctccatcttgtttgcttca
gagagggtgtccccttctccctaccacctgagcatgccacctttctgggg
catcaagtgtctacaggatcaagtacaccctgtccacctgaggtcagaaa
ggcagtcctctgctacatatgtgcagggcaccttggaccagcctgtgtat
gttctttggttggtggcttaggctctggggagatttaggggtctagctta
gttgacactgttggtcttcctatggtaatgccatccccttcaactcctcc
aatccttcccctaactcttccaaagtggtctctgacctcagtctaatggt
tggctgtaagtatctgcattggtctcagtcaactgctggtagaacctctc
agaaaacagttatgcaaggcttctgtcttcaatcacaacatggcattaat
aatactgtcagtgtttgctgactacccatggatgcatcccaagttgatgc
attactggaaagtctttcttcaagtctatgctccatttacgtccctgatt
tctttatatat
gaattccatagatccctttgtgaaagttgatttgggaatcaatgattatt
tggtgtgtttactgaaagcttgcttctgcaccacagtgggacacttttct
acaataatacccactttccatctcaacttagagacatagttttgaattca
cacaaaaaaaaatcttaaatcttgaattcagtgatagtaaaaagtgactc
taacaggcttacaactgttttactccttcaggatctaattggagaacatg
gcagctgcaaaccattgcatagtgactgagttcttcttggctggactctc
agagaatcaaaaagttcagctgcccctttttctcctatttgtagcaatct
atctgatcactgtggcaggaaacctggggatgattgcattgattgggatc
agttcccacttgcacacacccatgtactatttcctcagcagtctgtcctt
cattgacttctgtcagtctacagttgttacccctaaaatgttggtgagcc
ttctgacaaagaagaacatcatctcctactctggatgcatggttcagctc
tacttcttcatcagttttggaactgcagagtgctacacattagctgtaat
ggcatatgaccgctatgttgccatttgtaaccccctacgttacaatgtaa
ccatgtcctatcagatttacagttccttgatttcaggggtgtatatttat
gctgtgttctgtgcatcagtaaacaccggctttataattaggattcagtt
ctgcaagttaaatgtgatcaaccactatttctgtgatcttcttcccctgt
tgaaacttgcatgctctaatacctatatcaatgaaatattgattctattt
tttggttcagtaaacatctgtgtcccaaatgctgactgttattacttcct
acatcttcatcattgccagcatccttccgtattcgctccagtgagggcaa
gttcaaagccttcagtacttgcagtcccacatctctgctgttgctatctg
tatggttctactgcattcacatacttacagccttcatcaggtgagtttgg
tgaccaagggaaagtgtcctctgtgtttatactactgtgtaactattgct
gaaaccattgattcctaggcttgaggaattaaggatgtcactcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_38977799_38978366
seq2: B6Ng01-300J17.b_47_614

seq1  GAATTCATTACATATAAAAAGTACAATTGAATATTTGCATTGTTTCATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACATATAAAAAGTACAATTGAATATTTGCATTGTTTCATAC  50

seq1  CAAAGCATTAATAATGAAGGAATAAAGCTGCTAGAACATTTTCACAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCATTAATAATGAAGGAATAAAGCTGCTAGAACATTTTCACAATTC  100

seq1  TTTATGCAGAAACCTGTTGTCATTTGTCCGGAATAAACTCTGAGAAACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCAGAAACCTGTTGTCATTTGTCCGGAATAAACTCTGAGAAACTT  150

seq1  GACTGAAAATATGTGTTCACACTTATTAACATGGTATTAAGCTAGTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAAATATGTGTTCACACTTATTAACATGGTATTAAGCTAGTTTCA  200

seq1  AAGTTTCAAGGTTCTACATTTAGTCCACAAACAGTTGGTGTGTGTTGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCAAGGTTCTACATTTAGTCCACAAACAGTTGGTGTGTGTTGCAT  250

seq1  CTAGCTACTTTTTGTCCACATTTGGTATTGCCACAGATTTTCAATAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTACTTTTTGTCCACATTTGGTATTGCCACAGATTTTCAATAGCCA  300

seq1  CTATGATATACTTGTATGAAGATATTTCATTTTGATTTCATTGATGATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATATACTTGTATGAAGATATTTCATTTTGATTTCATTGATGATTA  350

seq1  ATCTTTCAATTAATTATATTTTATTTACATTCCAAATATTATCCCCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCAATTAATTATATTTTATTTACATTCCAAATATTATCCCCTCTT  400

seq1  GGTTCCCCCTCCCAGAGTTCTTCAGAACAGTCTCCATCTTGTTTGCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCCCTCCCAGAGTTCTTCAGAACAGTCTCCATCTTGTTTGCTTCA  450

seq1  GAGAGGGTGTCCCCTTCTCCCTACCACCTGAGCATGCCACCTTTCTGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGTGTCCCCTTCTCCCTACCACCTGAGCATGCCACCTTTCTGGGG  500

seq1  CATCAAGTGTCTACAGGATCAAGTACACCCTGTCCACCTGAGGTCAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGTGTCTACAGGATCAAGTACACCCTGTCCACCTGAGGTCAGAAA  550

seq1  GGCAGTCCTCTGCTACAT  568
      ||||||||||||||||||
seq2  GGCAGTCCTCTGCTACAT  568

seq1: chr9_39126300_39127444
seq2: B6Ng01-300J17.g_68_1213 (reverse)

seq1  CAAGAGTGACATCCTT-ATTCCTCAAGCTGTAG--ATCAATGGGTTCAGC  47
      |||||||||||||||| |||||||||||  |||  |||||||| ||||||
seq2  CAAGAGTGACATCCTTAATTCCTCAAGC-CTAGGAATCAATGGTTTCAGC  49

seq1  -ATAGGTACAACAGTAGTATAAAACACAGAGGACACTTTCCCTTGGTCCA  96
       |||| ||| |||||||||| |||||||||||||||||||||||||| ||
seq2  AATAGTTAC-ACAGTAGTAT-AAACACAGAGGACACTTTCCCTTGGT-CA  96

seq1  CCAAACTCA-CTGATGAAGGCTGTAAGTATGTGAATGCAGTAGAACCATA  145
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTCACCTGATGAAGGCTGTAAGTATGTGAATGCAGTAGAACCATA  146

seq1  CAAGATAGCAACAGCAGAGATGTGGGAACTGCAAGTACTGAAGGCTTTGA  195
      | |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  C-AGATAGCAACAGCAGAGATGTGGG-ACTGCAAGTACTGAAGGCTTTGA  194

seq1  ACTTGCCCTCACTGGAGCGAATACGG-AGGATGCTGGCAATGATGAAGAT  244
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACTTGCCCTCACTGGAGCGAATACGGAAGGATGCTGGCAATGATGAAGAT  244

seq1  GTAGGAAGTAATAACAGTCAGCA-TTGGGACACAGATGTTTACTGAACCA  293
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTAGGAAGTAATAACAGTCAGCATTTGGGACACAGATGTTTACTGAACCA  294

seq1  AAAAATAGAATCAATATTTCATTGATATAGGTATTAGAGCATGCAAGTTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGAATCAATATTTCATTGATATAGGTATTAGAGCATGCAAGTTT  344

seq1  CAACAGGGGAAGAAGATCACAGAAATAGTGGTTGATCACATTTAACTTGC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGGGAAGAAGATCACAGAAATAGTGGTTGATCACATTTAACTTGC  394

seq1  AGAACTGAATCCTAATTATAAAGCCGGTGTTTACTGATGCACAGAACACA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGAATCCTAATTATAAAGCCGGTGTTTACTGATGCACAGAACACA  444

seq1  GCATAAATATACACCCCTGAAATCAAGGAACTGTAAATCTGATAGGACAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAATATACACCCCTGAAATCAAGGAACTGTAAATCTGATAGGACAT  494

seq1  GGTTACATTGTAACGTAGGGGGTTACAAATGGCAACATAGCGGTCATATG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACATTGTAACGTAGGGGGTTACAAATGGCAACATAGCGGTCATATG  544

seq1  CCATTACAGCTAATGTGTAGCACTCTGCAGTTCCAAAACTGATGAAGAAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACAGCTAATGTGTAGCACTCTGCAGTTCCAAAACTGATGAAGAAG  594

seq1  TAGAGCTGAACCATGCATCCAGAGTAGGAGATGATGTTCTTCTTTGTCAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTGAACCATGCATCCAGAGTAGGAGATGATGTTCTTCTTTGTCAG  644

seq1  AAGGCTCACCAACATTTTAGGGGTAACAACTGTAGACTGACAGAAGTCAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCACCAACATTTTAGGGGTAACAACTGTAGACTGACAGAAGTCAA  694

seq1  TGAAGGACAGACTGCTGAGGAAATAGTACATGGGTGTGTGCAAGTGGGAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGACAGACTGCTGAGGAAATAGTACATGGGTGTGTGCAAGTGGGAA  744

seq1  CTGATCCCAATCAATGCAATCATCCCCAGGTTTCCTGCCACAGTGATCAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCCAATCAATGCAATCATCCCCAGGTTTCCTGCCACAGTGATCAG  794

seq1  ATAGATTGCTACAAATAGGAGAAAAAGGGGCAGCTGAACTTTTTGATTCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTGCTACAAATAGGAGAAAAAGGGGCAGCTGAACTTTTTGATTCT  844

seq1  CTGAGAGTCCAGCCAAGAAGAACTCAGTCACTATGCAATGGTTTGCAGCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGTCCAGCCAAGAAGAACTCAGTCACTATGCAATGGTTTGCAGCT  894

seq1  GCCATGTTCTCCAATTAGATCCTGAAGGAGTAAAACAGTTGTAAGCCTGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTTCTCCAATTAGATCCTGAAGGAGTAAAACAGTTGTAAGCCTGT  944

seq1  TAGAGTCACTTTTTACTATCACTGAATTCAAGATTTAAGATTTTTTTTTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCACTTTTTACTATCACTGAATTCAAGATTTAAGATTTTTTTTTG  994

seq1  TGTGAATTCAAAACTATGTCTCTAAGTTGAGATGGAAAGTGGGTATTATT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATTCAAAACTATGTCTCTAAGTTGAGATGGAAAGTGGGTATTATT  1044

seq1  GTAGAAAAGTGTCCCACTGTGGTGCAGAAGCAAGCTTTCAGTAAACACAC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAAGTGTCCCACTGTGGTGCAGAAGCAAGCTTTCAGTAAACACAC  1094

seq1  CAAATAATCATTGATTCCCAAATCAACTTTCACAAAGGGATCTATGGAAT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATCATTGATTCCCAAATCAACTTTCACAAAGGGATCTATGGAAT  1144

seq1  TC  1145
      ||
seq2  TC  1146