BAC Information

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BAC

Clone NameB6Ng01-302N07
Chromosome9 (Build37)
Map Location 99,697,992 - 99,855,394
singlet/doubletdoublet
Overlap geneSox14, LOC667456
Upstream geneEG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429
Downstream gene4930519F24Rik, LOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486, Stag1, LOC100040990
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302N07.bB6Ng01-302N07.g
ACCGA096781GA096782
length1,1621,086
definitionB6Ng01-302N07.b B6Ng01-302N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,854,254 - 99,855,394)(99,697,992 - 99,699,072)
sequence
gaattcctgcgctactgtcccctgtcagcaaagtgctgagacaacaaact
taacctctctgtccagtgtgagcctatcagccatggttattaaatcccac
aaaagggaggagaggagaagtgaatagagctgagcgaaagagcgctttcc
ccatttggatagctgtgcagaacggagctcctagagaacggcgcgcagtg
taattgctggcctgaaagaaaaaggaaaactataaaaggaaagagagggg
ggattgataatgaacaatttatcctcagagctaacagttaattaattctg
aaaatatctgtcaggctaaaagaaatggggggggagggctatgccacata
cacaattaataaaataataataacaaaaaggaaagaaaaaaaaagatttt
tttaaaggtgttactatcttcttacaggctgggccctgggcttcccaatg
tcattttcaacacatttttccccctccgtctcttttcagaaattgttctc
atgaatgatttatatatgtctagttatctgaagtgatttctatggacccc
ggcgcattgctgcataattgttaattttaacgccataatagcttcagatg
gaggaagagattaggcatttattgcacaattaaatgaaacatacttgaga
atcacaaagggttccgtaattatttcagaccattaataaaatgggcatta
aattatatgggacacaaaagggaaaggaaatagattttcattacagcaat
agaagctgagagcagttaatagatccttgttgaattatctttctctctct
ctctctctctctgaaattaattgttgcctagcttatttcaaagcaaaata
aaggagtgaaaaaaaaaagtgttttaaagccacgctgatgaaagggcttt
gtttgatgaggacaatggcccagtgatacactccaaaaaaacaaggtaat
ctttgattctgggcttcttgcctttgcttcccagcgactttcaaggcagg
tctttttcagcagctgggggtttcccccaccacctaccccaactccccag
cacaacttgaatacctcaggaaagaacatggtaaggagaggacattcaag
gtaggattgagtccaattgtcccctctcttccagctggtcttgagggaac
gctccttggatg
gaattcccagctctgctgttagccgctccctggttgctctgtcctcagag
tagaacactagagacacccagggttcccatgacaccaagccgcttgtaaa
catggggatattgaacgctgtcctcaaagtacaaagacacagagagggga
gagaaaaccatcccacgaagcccaaagaaaaacacccaggcaaggatgaa
tgggcagacacacaatgcagcaaaggacaagccatcctggtacgaaattc
cttccagtgaatgatattgggatggagaggcagctcagtgacgacataat
tgtttagcatggatatagcttgtacccagtacaaaaaaaaattaagcgaa
gaaaaacatataaacaatatgtctgatgtctagacttttatatactactt
agttcttgatgactagcagttggaatatatttctgcccttggcaagtcga
gtttgatccatttgtttacccattctctgaacaaatacatgcatttggac
tgcagccattgaaaggtgctgaaagtcttaaggtatcaaatagaggaaag
atctgtgagctgagggcatgtgtagaaaagggggaaaatttccaagtttg
acatctggggagccgatttggcattggttctttgcctctgtgcaccttct
gtgtgtcctctgagtcttacttagaacccccctttctagaaacttccctt
ggattgttaagcagtgaatgtaagggtcgttctctttgcttcatttaaca
ttcctaggtaccacagtaccaggggccgttgtaacccgattttttttccc
tttctattcccataataaagaaatacatggtggattacacactacgtttt
cttagcagtctgcccactgacaggcgaaatctctgtcccctggaaaggct
ccatgactgcttttactaatacaatatagcaggtatgatgctcaggccac
cacctttcaatctacttgaatgtgcacttcattgagctgtgttgcctttt
gaataaactgcacggtaagtaaccaaggttgacagatcctggatgagccc
aggttttctagccatcttttcctaaggtatagagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_99854254_99855394
seq2: B6Ng01-302N07.b_43_1204 (reverse)

seq1  CATCCA--GAGCGTTCCCTCAGGAACAGCTGG-AGAGA-GGGACCATTGG  46
      ||||||  ||||||||||||| || ||||||| ||||| ||||| |||||
seq2  CATCCAAGGAGCGTTCCCTCAAGACCAGCTGGAAGAGAGGGGACAATTGG  50

seq1  -CTC-ATCCTTCCTTG-ATGTCCTCTCCCTCCCCTG-TCTTTCCTGA-GT  91
       ||| ||||| ||||| ||||||||||| | || || |||||||||| ||
seq2  ACTCAATCCTACCTTGAATGTCCTCTCCTTACCATGTTCTTTCCTGAGGT  100

seq1  CTTCAAGTTGTGCT-GGGAGTT-GGGTAGGTG--TGGGGAAACCCCAAGC  137
       ||||||||||||| ||||||| |||||||||   ||||||||||| |||
seq2  ATTCAAGTTGTGCTGGGGAGTTGGGGTAGGTGGTGGGGGAAACCCCCAGC  150

seq1  TGCTG-AAAAGA-CTGCCTTGAAAGTCGCTGGG-AGCAAAGGCAAGAAG-  183
      ||||| |||||| |||||||||||||||||||| ||||||||||||||| 
seq2  TGCTGAAAAAGACCTGCCTTGAAAGTCGCTGGGAAGCAAAGGCAAGAAGC  200

seq1  CCAGAATCAAAGATTACCTTG-TTTTTTGGAGTGTATCACT-GGCCATTG  231
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  CCAGAATCAAAGATTACCTTGTTTTTTTGGAGTGTATCACTGGGCCATTG  250

seq1  TCCTCATCAAACAAAGCCCTTTCATCAGCGTGGCTTTAAAACAC-TTTTT  280
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCCTCATCAAACAAAGCCCTTTCATCAGCGTGGCTTTAAAACACTTTTTT  300

seq1  TTTTCACTCCTTTATTTTGCTTTGAAATAAGCTAGGCAACAATTAATTTC  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTCCTTTATTTTGCTTTGAAATAAGCTAGGCAACAATTAATTTC  350

seq1  AGAGAGAGAGAGAGAGAGAGAAAGATAATTCAACAAGGATCTATT-ACTG  379
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGAGAGAGAGAGAGAGAGAGAAAGATAATTCAACAAGGATCTATTAACTG  400

seq1  CTCTCAGCTTCTATTGCTGTAATGAAAATCTATTTCCTTTCCCTTTTGTG  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGCTTCTATTGCTGTAATGAAAATCTATTTCCTTTCCCTTTTGTG  450

seq1  TCCCATATAATTTAATGCCCATTTTATTAATGGTCTGAAATAATTACGGA  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATATAATTTAATGCCCATTTTATTAATGGTCTGAAATAATTACGGA  500

seq1  ACCCTTTGTGATTCTCAAGTATGTTTCATTTAATTGTGCAATAAATGCCT  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTGTGATTCTCAAGTATGTTTCATTTAATTGTGCAATAAATGCCT  550

seq1  AATCTCTTCCTCCATCTGAAGCTATTATGGCGTTAAAATTAACAATTATG  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTTCCTCCATCTGAAGCTATTATGGCGTTAAAATTAACAATTATG  600

seq1  CAGCAATGCGCCGGGGTCCATAGAAATCACTTCAGATAACTAGACATATA  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATGCGCCGGGGTCCATAGAAATCACTTCAGATAACTAGACATATA  650

seq1  TAAATCATTCATGAGAACAATTTCTGAAAAGAGACGGAGGGGGAAAAATG  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCATTCATGAGAACAATTTCTGAAAAGAGACGGAGGGGGAAAAATG  700

seq1  TGTTGAAAATGACATTGGGAAGCCCAGGGCCCAGCCTGTAAGAAGATAGT  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAAATGACATTGGGAAGCCCAGGGCCCAGCCTGTAAGAAGATAGT  750

seq1  AACACCTTTAAAAAAATCTTTTTTTTTCTTTCCTTTTTGTTATTATTATT  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTTTAAAAAAATCTTTTTTTTTCTTTCCTTTTTGTTATTATTATT  800

seq1  TTATTAATTGTGTATGTGGCATAGCCCTCCCCCCCCATTTCTTTTAGCCT  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATTGTGTATGTGGCATAGCCCTCCCCCCCCATTTCTTTTAGCCT  850

seq1  GACAGATATTTTCAGAATTAATTAACTGTTAGCTCTGAGGATAAATTGTT  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATATTTTCAGAATTAATTAACTGTTAGCTCTGAGGATAAATTGTT  900

seq1  CATTATCAATCCCCCCTCTCTTTCCTTTTATAGTTTTCCTTTTTCTTTCA  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCAATCCCCCCTCTCTTTCCTTTTATAGTTTTCCTTTTTCTTTCA  950

seq1  GGCCAGCAATTACACTGCGCGCCGTTCTCTAGGAGCTCCGTTCTGCACAG  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCAATTACACTGCGCGCCGTTCTCTAGGAGCTCCGTTCTGCACAG  1000

seq1  CTATCCAAATGGGGAAAGCGCTCTTTCGCTCAGCTCTATTCACTTCTCCT  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCAAATGGGGAAAGCGCTCTTTCGCTCAGCTCTATTCACTTCTCCT  1050

seq1  CTCCTCCCTTTTGTGGGATTTAATAACCATGGCTGATAGGCTCACACTGG  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCTTTTGTGGGATTTAATAACCATGGCTGATAGGCTCACACTGG  1100

seq1  ACAGAGAGGTTAAGTTTGTTGTCTCAGCACTTTGCTGACAGGGGACAGTA  1129
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGGTTAAGTTTGTTGTCTCAGCACTTTGCTGACAGGGGACAGTA  1150

seq1  GCGCAGGAATTC  1141
      ||||||||||||
seq2  GCGCAGGAATTC  1162

seq1: chr9_99697992_99699072
seq2: B6Ng01-302N07.g_67_1152

seq1  GAATTCCCAGCTCTGCTGTTAGCCGCTCCCTGGTTGCTCTGTCCTCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGCTCTGCTGTTAGCCGCTCCCTGGTTGCTCTGTCCTCAGAG  50

seq1  TAGAACACTAGAGACACCCAGGGTTCCCATGACACCAAGCCGCTTGTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACACTAGAGACACCCAGGGTTCCCATGACACCAAGCCGCTTGTAAA  100

seq1  CATGGGGATATTGAACGCTGTCCTCAAAGTACAAAGACACAGAGAGGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGGATATTGAACGCTGTCCTCAAAGTACAAAGACACAGAGAGGGGA  150

seq1  GAGAAAACCATCCCACGAAGCCCAAAGAAAAACACCCAGGCAAGGATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAACCATCCCACGAAGCCCAAAGAAAAACACCCAGGCAAGGATGAA  200

seq1  TGGGCAGACACACAATGCAGCAAAGGACAAGCCATCCTGGTACGAAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGACACACAATGCAGCAAAGGACAAGCCATCCTGGTACGAAATTC  250

seq1  CTTCCAGTGAATGATATTGGGATGGAGAGGCAGCTCAGTGACGACATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGTGAATGATATTGGGATGGAGAGGCAGCTCAGTGACGACATAAT  300

seq1  TGTTTAGCATGGATATAGCTTGTACCCAGTACAAAAAAAAATTAAGCGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGCATGGATATAGCTTGTACCCAGTACAAAAAAAAATTAAGCGAA  350

seq1  GAAAAACATATAAACAATATGTCTGATGTCTAGACTTTTATATACTACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACATATAAACAATATGTCTGATGTCTAGACTTTTATATACTACTT  400

seq1  AGTTCTTGATGACTAGCAGTTGGAATATATTTCTGCCCTTGGCAAGTCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTGATGACTAGCAGTTGGAATATATTTCTGCCCTTGGCAAGTCGA  450

seq1  GTTTGATCCATTTGTTTACCCATTCTCTGAACAAATACATGCATTTGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATCCATTTGTTTACCCATTCTCTGAACAAATACATGCATTTGGAC  500

seq1  TGCAGCCATTGAAAGGTGCTGAAAGTCTTAAGGTATCAAATAGAGGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCATTGAAAGGTGCTGAAAGTCTTAAGGTATCAAATAGAGGAAAG  550

seq1  ATCTGTGAGCTGAGGGCATGTGTAGAAAAGGGGGAAAATTTCCAAGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGAGCTGAGGGCATGTGTAGAAAAGGGGGAAAATTTCCAAGTTTG  600

seq1  ACATCTGGGGAGCCGATTTGGCATTGGTTCTTTGCCTCTGTGCACCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGGGGAGCCGATTTGGCATTGGTTCTTTGCCTCTGTGCACCTTCT  650

seq1  GTGTGTCCTCTGAGTCTTACTTAGAACCCCCCTTTCTAGAAACTTCCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCCTCTGAGTCTTACTTAGAACCCCCCTTTCTAGAAACTTCCCTT  700

seq1  GGATTGTTAAGCAGTGAATGTAAGGGTCGTTCTCTTTGCTTCATTTAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTTAAGCAGTGAATGTAAGGGTCGTTCTCTTTGCTTCATTTAACA  750

seq1  TTCCTAGGTACCACAGTACCAGGGGCCGTTGTAACCCGA-TTTTTTTCCC  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTCCTAGGTACCACAGTACCAGGGGCCGTTGTAACCCGATTTTTTTTCCC  800

seq1  TTTCTATTCCCATAATAAAGAAATACATGGTGGATTACACACTACGTTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTCCCATAATAAAGAAATACATGGTGGATTACACACTACGTTTT  850

seq1  CTTAGCAGTCTGCCCACTGACAGGCGAAATCTCTGTCCCCTGG-AAGGCT  898
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTTAGCAGTCTGCCCACTGACAGGCGAAATCTCTGTCCCCTGGAAAGGCT  900

seq1  CCATGACTGCTTTTACTAATACAATATAGCAGGTATGATGCTCAGGCCAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACTGCTTTTACTAATACAATATAGCAGGTATGATGCTCAGGCCAC  950

seq1  CACC-TTCAATCTACTTGAATGTGCAC-TCATTGGAGGCTGTGTTGCCCT  996
      |||| |||||||||||||||||||||| ||||||   ||||||||| |||
seq2  CACCTTTCAATCTACTTGAATGTGCACTTCATTG--AGCTGTGTTG-CCT  997

seq1  TTTGATAAAACTGCAC-GTAGGTAACC-AGGTTGACAG-TCCTGGATGAG  1043
      |||||  ||||||||| ||| |||||| |||||||||| |||||||||||
seq2  TTTGAATAAACTGCACGGTAAGTAACCAAGGTTGACAGATCCTGGATGAG  1047

seq1  CCCA-GTTTTCTAGCCATCCTTTCCT-AGGTATAAGAGAA  1081
      |||| |||||||||||||| |||||| |||||| ||||||
seq2  CCCAGGTTTTCTAGCCATCTTTTCCTAAGGTAT-AGAGAA  1086