BAC Information

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BAC

Clone NameB6Ng01-302N19
Chromosome9 (Build37)
Map Location 116,916,759 - 117,047,709
singlet/doubletdoublet
Overlap geneRbms3
Upstream geneGadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik
Downstream geneLOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302N19.bB6Ng01-302N19.g
ACCGA096805GA096806
length6251,140
definitionB6Ng01-302N19.b B6Ng01-302N19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,047,080 - 117,047,709)(116,916,759 - 116,917,897)
sequence
gaattctttgtccttaactctttcagaaaaaagaactaacagtggaattt
atttttctatcagtacttactacccagatctatgtttatatattttggtg
tcaaaccaaggtttattgttttcatgggggagcatgtgtttagaaattgc
cagcccctgtcagtgtggcgtgtcttaggtaaggaagagagagtagggtt
gagtctctctgtctctgtgtgtctctccatatttctgtgtcctctctctc
tctctctctctctctctctctctctctctctctctctctgtgtgtgtcct
tacctcatcaataaataaaaagacaactcttcaaccagctgtttcatttg
tcacgcagtggagagaatccaactgtcttaccaatatttccacccaaggt
atacataactacctagaaactgatttggaaaggagaccttattgctttgg
ctacacaaatgggtagatccagagtgagttaatatgtaatggagctcctg
gtcggatgagacatgaaaagatgtagatatatttagagaaatatatcata
agtatatatacataagaatgtataaccatacttagactatttcgtctcct
gctccatttactattttgaaccaaa
gaattcagttaggagagcaatgaacaatctcagctcattttcagtatact
tgagggtctgcagagatagctcagctgctaagagcacattgttagaggac
ccaagttccattctcaggaccacaacaagtgactcacaaccacctggcgc
tccaactacagaggatccacacaatgccctcttctggcctccttcggcat
ctatacatatatgcacttataagtacacacacaagtgcgtataaaaataa
aataaatattttaaaatgtatacttagtcatgttctaaaaccttgactag
aaaagattttttttctcatttctctcagctaaacatcatcatgaacctag
agttgaattgaacttcaacaaatctacagaaaccaatttggccagttaaa
aagtaaaaatgtcgataactccagacacaaaagatcatgacaaacagaca
aacatccttccactttttagccgtgtgaattatctctcactggtcacatg
cctttccagggatggtatcattttcttctgctttgtctctttcccaaatc
acaagaatggattttcatagaactgaagtgtcatatatcacatgtgagat
agacctgtagccttgcttcattctatctggacaatggtgaggaagaagcc
acactcagctgtccacatccaaaggcacaggcatggttagctctccttcc
cttctgcagataactgacctcttgtttaagatgaccaaggttcaaagcag
agtaatcctgttggcaaagcttcactcgggatattactgaatgggacctt
tgtccccacattcctgaggaaagagaaatcccctacttttgcaagcctac
aagcatctacaggtgttaggcacttcttgttctacaagggaagggactcc
atatggcaggcaaccagaaacaaatctatgaaactcagtcccccttctta
gttttgaatagagagagtttagttactttttttttttctttttaaaattt
ctgctgctgtgtttttgagaagtgattagtctagcctagctgtccttgac
tcccccacatagctgaagaataacctggagcttctcagattctctgccct
ctacttccagatagccatgtgtcatccaaatccaagtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_117047080_117047709
seq2: B6Ng01-302N19.b_47_671 (reverse)

seq1  TTTGATTCAAAATAGAAAATGGAGCAGGAAAACAAAATACATCTAGGTTT  50
      |||| |||||||||| |||||||||||| | || |||||  |||| || |
seq2  TTTGGTTCAAAATAGTAAATGGAGCAGG-AGACGAAATA-GTCTAAGTAT  48

seq1  GGTTAGAC-TTC-TGTGGAGTTATTCAACTTATGCTTAAATCTCTCTAAC  98
      ||||| || ||| | || |  |||   |||||||  || || ||||||| 
seq2  GGTTATACATTCTTATGTATATAT---ACTTATG-ATATATTTCTCTAAA  94

seq1  TAAATCTACCTCTTTTCAGGGCAAATCCGACCAGGAGCTCCATAGCATCT  148
      || |||||| |||||||| | |  |||||||||||||||||||  ||| |
seq2  TATATCTACATCTTTTCATGTCTCATCCGACCAGGAGCTCCATTACATAT  144

seq1  TCAACTCACTCAGGAACAACCCAGTTGTGAAGCCAAAGCAATAAGGTCTC  198
      | ||||||||| ||| | ||||| ||||| ||||||||||||||||||||
seq2  T-AACTCACTCTGGATCTACCCATTTGTGTAGCCAAAGCAATAAGGTCTC  193

seq1  CTTTCCAAATCAGTTTCTAGGTTGTTAGGTACACCTTGGGTGGAAATATT  248
      |||||||||||||||||||||| |||| ||| ||||||||||||||||||
seq2  CTTTCCAAATCAGTTTCTAGGTAGTTATGTATACCTTGGGTGGAAATATT  243

seq1  GCTAAGACAGCTGGATTCTCTCCACTGCGTGACAAATGAAACAGGTGGTT  298
      | |||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  GGTAAGACAGTTGGATTCTCTCCACTGCGTGACAAATGAAACAGCTGGTT  293

seq1  GAAGAGTTGCCATGTGGTTTACTGATGAGGTAAGGGGAGAGAGAGAGAGA  348
      ||||||||| | | |  |||| |||||||||||||  | | | |||||||
seq2  GAAGAGTTGTCTTTTTATTTATTGATGAGGTAAGGACACACACAGAGAGA  343

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGACACAGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGACACAGAA  393

seq1  ATATGGAGAGACACACAGAGACAGAGAGACTCAACCCTACTCTCTCTTCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAGAGACACACAGAGACAGAGAGACTCAACCCTACTCTCTCTTCC  443

seq1  TTACCTAAGACACGCCACACTGACAGGGGCTGGCAATTTCTAAACACATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTAAGACACGCCACACTGACAGGGGCTGGCAATTTCTAAACACATG  493

seq1  CTCCCCCATGAAAACAATAAACCTTGGTTTGACACCAAAATATATAAACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCATGAAAACAATAAACCTTGGTTTGACACCAAAATATATAAACA  543

seq1  TAGATCTGGGTAGTAAGTACTGATAGAAAAATAAATTCCACTGTTAGTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTGGGTAGTAAGTACTGATAGAAAAATAAATTCCACTGTTAGTTC  593

seq1  TTTTTTCTGAAAGAGTTAAGGACAAAGAATTC  630
      ||||||||||||||||||||||||||||||||
seq2  TTTTTTCTGAAAGAGTTAAGGACAAAGAATTC  625

seq1: chr9_116916759_116917897
seq2: B6Ng01-302N19.g_65_1204

seq1  GAATTCAGTTAGGAGAGCAATGAACAATCTCAGCTCATTTTCAGTATACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTAGGAGAGCAATGAACAATCTCAGCTCATTTTCAGTATACT  50

seq1  TGAGGGTCTGCAGAGATAGCTCAGCTGCTAAGAGCACATTGTTAGAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTCTGCAGAGATAGCTCAGCTGCTAAGAGCACATTGTTAGAGGAC  100

seq1  CCAAGTTCCATTCTCAGGACCACAACAAGTGACTCACAACCACCTGGCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTCCATTCTCAGGACCACAACAAGTGACTCACAACCACCTGGCGC  150

seq1  TCCAACTACAGAGGATCCACACAATGCCCTCTTCTGGCCTCCTTCGGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTACAGAGGATCCACACAATGCCCTCTTCTGGCCTCCTTCGGCAT  200

seq1  CTATACATATATGCACTTATAAGTACACACACAAGTGCGTATAAAAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACATATATGCACTTATAAGTACACACACAAGTGCGTATAAAAATAA  250

seq1  AATAAATATTTTAAAATGTATACTTAGTCATGTTCTAAAACCTTGACTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATATTTTAAAATGTATACTTAGTCATGTTCTAAAACCTTGACTAG  300

seq1  AAAAGATTTTTTTTCTCATTTCTCTCAGCTAAACATCATCATGAACCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATTTTTTTTCTCATTTCTCTCAGCTAAACATCATCATGAACCTAG  350

seq1  AGTTGAATTGAACTTCAACAAATCTACAGAAACCAATTTGGCCAGTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAATTGAACTTCAACAAATCTACAGAAACCAATTTGGCCAGTTAAA  400

seq1  AAGTAAAAATGTCGATAACTCCAGACACAAAAGATCATGACAAACAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAAATGTCGATAACTCCAGACACAAAAGATCATGACAAACAGACA  450

seq1  AACATCCTTCCACTTTTTAGCCGTGTGAATTATCTCTCACTGGTCACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCTTCCACTTTTTAGCCGTGTGAATTATCTCTCACTGGTCACATG  500

seq1  CCTTTCCAGGGATGGTATCATTTTCTTCTGCTTTGTCTCTTTCCCAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCAGGGATGGTATCATTTTCTTCTGCTTTGTCTCTTTCCCAAATC  550

seq1  ACAAGAATGGATTTTCATAGAACTGAAGTGTCATATATCACATGTGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAATGGATTTTCATAGAACTGAAGTGTCATATATCACATGTGAGAT  600

seq1  AGACCTGTAGCCTTGCTTCATTCTATCTGGACAATGGTGAGGAAGAAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGTAGCCTTGCTTCATTCTATCTGGACAATGGTGAGGAAGAAGCC  650

seq1  ACACTCAGCTGTCCACATCCAAAGGCACAGGCATGGTTAGCTCTCCTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAGCTGTCCACATCCAAAGGCACAGGCATGGTTAGCTCTCCTTCC  700

seq1  CTTCTGCAGATAACTGACCTCTTGTTTAAGATGACCAAGGTTCAAAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCAGATAACTGACCTCTTGTTTAAGATGACCAAGGTTCAAAGCAG  750

seq1  AGTAATCCTGTTGGCAAAGCTTCACTCGGGATATTACTGAATGGGACCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCCTGTTGGCAAAGCTTCACTCGGGATATTACTGAATGGGACCTT  800

seq1  TGTCCCCACATTCCTGAGGAAAGAGAAATCCCCTACTTTTGCAAGCCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCACATTCCTGAGGAAAGAGAAATCCCCTACTTTTGCAAGCCTAC  850

seq1  AAGCATCTACAGGTGTTAGGCACTTCTTGTTCTACAA-GGAAGGGACTCC  899
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAGCATCTACAGGTGTTAGGCACTTCTTGTTCTACAAGGGAAGGGACTCC  900

seq1  ATATGGCAGGCAACCAGAAACAAATCTATGAAACTCAGTCCCCCTTCTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCAGGCAACCAGAAACAAATCTATGAAACTCAGTCCCCCTTCTTA  950

seq1  GTTTTGAATAGAGAGAGTTTAGTTACTTTTTTTTTCT-TTTTAAAAATTT  998
      ||||||||||||||||||||||||||||||||||| | |||| |||||||
seq2  GTTTTGAATAGAGAGAGTTTAGTTACTTTTTTTTTTTCTTTTTAAAATTT  1000

seq1  CTGCTGCTGTTGTTTTTGAGAAGTGATTTAGTCTAGCCTAGGCTGTCCTT  1048
      ||||||||| |||||||||||||||| ||||||||||||| |||||||||
seq2  CTGCTGCTG-TGTTTTTGAGAAGTGA-TTAGTCTAGCCTA-GCTGTCCTT  1047

seq1  GAACTCCCCACATAGCTGA--GATAACCTTGAGCTTCTCAGA-TCTCTG-  1094
      ||   ||||||||||||||   ||||||| |||||||||||| |||||| 
seq2  GACTCCCCCACATAGCTGAAGAATAACCTGGAGCTTCTCAGATTCTCTGC  1097

seq1  CCTCTACCTCCCCAGGATAGGCATGTGTCAT-CAAATCCAACTCTG  1139
      ||||||| |||    ||||| |||||||||| ||||||||| ||||
seq2  CCTCTACTTCC---AGATAGCCATGTGTCATCCAAATCCAAGTCTG  1140