BAC Information

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BAC

Clone NameB6Ng01-305C22
Chromosome9 (Build37)
Map Location 67,953,896 - 68,107,437
singlet/doubletdoublet
Overlap geneLOC100041451
Upstream geneTln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c
Downstream geneRora, 9530091C08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305C22.bB6Ng01-305C22.g
ACCGA098537GA098538
length609994
definitionB6Ng01-305C22.b B6Ng01-305C22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,953,896 - 67,954,498)(68,106,806 - 68,107,437)
sequence
gaattcatattcccttcagggccctcactccttcctcctattcttccata
aaatctccaagctccgtccactatttggctgtgggtgtgcgtatctgtct
gtgtcagctgctgggtggagcctctcagaggacaacatgctcctgtctgc
aagcatacagagagagtatcattagtagtgttaggaactggtgcttgccc
atgggatgggtctcaagttgggccagttattggttggccattccctcagt
ctgctccatcccctgtgcctgtatttcttttagacaggatacattttggg
ttgaaatttttgtgggtgggttggtgtctctctcgcttcactggagctca
tttctggctacaggaggtggcctcttcaggttccacatccccaatgtagt
gagtcacagcttaggtcaccaccgttgattcttaggtgcctcccttatcc
caggtttctgcctcagatgtcatccctggagatgccgctacctcctcacc
cccatctgaagctcatttcatagaacaaaatttgtcagtttcctctttag
aaatagccaatactggtaagcaaaatgctgagcatttttgcaaggggtgt
gtgtgtgtg

gaattcatcaggagtgcctgtccagtgcctgccatgtgctggaaactcac
agcagacatctggtagaccttatgaaagctatatacagactgtggtggaa
tactcttaactaatattcctagcacaccaaagggcctcgggatgcttcta
gatgcctacttaaggaaacatgacctggcagtgctgggcggttcctactg
gttttgtcctgactgtgggttatagtcaatcagtccctgtagtgattaag
tgtcacagacaactagactggatttggaatcatctagaaaattggggagg
catacctgtggcatgtctgtgagggaatttctcccatggaaatgggagat
tcactcagtatggcaaatcaagccactctatcccatgagttgagtgcata
ggtaaaagaaacagttgtgtgaaaagtcaaaatttgtcaaaagggacaaa
gaagggtgtcatatagtaatacgatggtcaattcatcaggaaggaataac
aagtgtagatccatatacattcaatggcagagcaccagagtataggaagc
aaactttagaagagatggtgggagaaatgaacagcaacacaatgagagtg
caagttttcagcctcccaccctcttcagtagcagaacacaaagcagagaa
tcaaagtaaccaaaaacgtaagactgaaggtcaaatgctctgcaagtcta
tacaaacactaactgaacgttctcaaatacatatggaatattgctttggg
atagagcacatattaaattagaagaccaatttttagcaaaatcaatattt
aaagattgaaatgatatcaagtagaagaccagagagatgactgggtggct
aagagtatttgctactctgacaggggaccaggattcagctcccagtactt
tgaaatgcctcacagccatctgtaactccaactccaggggatccaatgcc
ccctactggcctccataggcatctacacccacgtgcatgcatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_67953896_67954498
seq2: B6Ng01-305C22.b_53_655

seq1  ATATTCCCTTCAGGGCCCTCACTCCTTCCTCCTATTCTTCCATAAAATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCCTTCAGGGCCCTCACTCCTTCCTCCTATTCTTCCATAAAATCT  50

seq1  CCAAGCTCCGTCCACTATTTGGCTGTGGGTGTGCGTATCTGTCTGTGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTCCGTCCACTATTTGGCTGTGGGTGTGCGTATCTGTCTGTGTCA  100

seq1  GCTGCTGGGTGGAGCCTCTCAGAGGACAACATGCTCCTGTCTGCAAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGGGTGGAGCCTCTCAGAGGACAACATGCTCCTGTCTGCAAGCAT  150

seq1  ACAGAGAGAGTATCATTAGTAGTGTTAGGAACTGGTGCTTGCCCATGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGAGTATCATTAGTAGTGTTAGGAACTGGTGCTTGCCCATGGGA  200

seq1  TGGGTCTCAAGTTGGGCCAGTTATTGGTTGGCCATTCCCTCAGTCTGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTCAAGTTGGGCCAGTTATTGGTTGGCCATTCCCTCAGTCTGCTC  250

seq1  CATCCCCTGTGCCTGTATTTCTTTTAGACAGGATACATTTTGGGTTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCTGTGCCTGTATTTCTTTTAGACAGGATACATTTTGGGTTGAAA  300

seq1  TTTTTGTGGGTGGGTTGGTGTCTCTCTCGCTTCACTGGAGCTCATTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTGGGTGGGTTGGTGTCTCTCTCGCTTCACTGGAGCTCATTTCTG  350

seq1  GCTACAGGAGGTGGCCTCTTCAGGTTCCACATCCCCAATGTAGTGAGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGGAGGTGGCCTCTTCAGGTTCCACATCCCCAATGTAGTGAGTCA  400

seq1  CAGCTTAGGTCACCACCGTTGATTCTTAGGTGCCTCCCTTATCCCAGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTAGGTCACCACCGTTGATTCTTAGGTGCCTCCCTTATCCCAGGTT  450

seq1  TCTGCCTCAGATGTCATCCCTGGAGATGCCGCTACCTCCTCACCCCCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCAGATGTCATCCCTGGAGATGCCGCTACCTCCTCACCCCCATC  500

seq1  TGAAGCTCATTTCATAGAACAAAATTTGTCAGTTTCCTCTTTAGAAATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTCATTTCATAGAACAAAATTTGTCAGTTTCCTCTTTAGAAATAG  550

seq1  CCAATACTGGTAAGCAAAATGCTGAGCATTTTTGCAAGGGGTGTGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATACTGGTAAGCAAAATGCTGAGCATTTTTGCAAGGGGTGTGTGTGT  600

seq1  GTG  603
      |||
seq2  GTG  603


seq1: chr9_68106806_68107437
seq2: B6Ng01-305C22.g_66_697 (reverse)

seq1  GCTACTGAAGAGGGTGGGAGGCTGAAAACTTGCACTCTCATTGTGTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGAAGAGGGTGGGAGGCTGAAAACTTGCACTCTCATTGTGTTGCT  50

seq1  GTTCATTTCTCCCACCATCTCTTCTAAAGTTTGCTTCCTATACTCTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTCTCCCACCATCTCTTCTAAAGTTTGCTTCCTATACTCTGGTG  100

seq1  CTCTGCCATTGAATGTATATGGATCTACACTTGTTATTCCTTCCTGATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCATTGAATGTATATGGATCTACACTTGTTATTCCTTCCTGATGA  150

seq1  ATTGACCATCGTATTACTATATGACACCCTTCTTTGTCCCTTTTGACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCATCGTATTACTATATGACACCCTTCTTTGTCCCTTTTGACAAA  200

seq1  TTTTGACTTTTCACACAACTGTTTCTTTTACCTATGCACTCAACTCATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACTTTTCACACAACTGTTTCTTTTACCTATGCACTCAACTCATGG  250

seq1  GATAGAGTGGCTTGATTTGCCATACTGAGTGAATCTCCCATTTCCATGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGTGGCTTGATTTGCCATACTGAGTGAATCTCCCATTTCCATGGG  300

seq1  AGAAATTCCCTCACAGACATGCCACAGGTATGCCTCCCCAATTTTCTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCCCTCACAGACATGCCACAGGTATGCCTCCCCAATTTTCTAGA  350

seq1  TGATTCCAAATCCAGTCTAGTTGTCTGTGACACTTAATCACTACAGGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCAAATCCAGTCTAGTTGTCTGTGACACTTAATCACTACAGGGAC  400

seq1  TGATTGACTATAACCCACAGTCAGGACAAAACCAGTAGGAACCGCCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGACTATAACCCACAGTCAGGACAAAACCAGTAGGAACCGCCCAGC  450

seq1  ACTGCCAGGTCATGTTTCCTTAAGTAGGCATCTAGAAGCATCCCGAGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAGGTCATGTTTCCTTAAGTAGGCATCTAGAAGCATCCCGAGGCC  500

seq1  CTTTGGTGTGCTAGGAATATTAGTTAAGAGTATTCCACCACAGTCTGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTGTGCTAGGAATATTAGTTAAGAGTATTCCACCACAGTCTGTAT  550

seq1  ATAGCTTTCATAAGGTCTACCAGATGTCTGCTGTGAGTTTCCAGCACATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTTCATAAGGTCTACCAGATGTCTGCTGTGAGTTTCCAGCACATG  600

seq1  GCAGGCACTGGACAGGCACTCCTGATGAATTC  632
      ||||||||||||||||||||||||||||||||
seq2  GCAGGCACTGGACAGGCACTCCTGATGAATTC  632


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