BAC Information

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BAC

Clone NameB6Ng01-305D24
Chromosome9 (Build37)
Map Location 20,085,425 - 20,219,834
singlet/doubletdoublet
Overlap geneOlfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824
Upstream geneOlfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872
Downstream geneZfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305D24.bB6Ng01-305D24.g
ACCGA098589GA098590
length1,185928
definitionB6Ng01-305D24.b B6Ng01-305D24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,085,425 - 20,086,619)(20,219,271 - 20,219,834)
sequence
gaattcttcttaattttccatatatatttttctatgtagatatctgtgta
gttgatcttattcagtcattagaaatgtaagctatcaagctattttttag
taacaggagttagttaataacagaaagtaagggaaatagaccatttataa
ctgttttcattacccttaaatacattattattattattattattactatt
attattattattattgaaaatgttaatgactatagagtttaaagttgttg
cataaaattcctaagagatacattcatgttattttgatttcttttcatgt
caacacaataggaattaaaggaagtttttttattattatccaggatatta
cagtaaactaatatatctatatcattcaacattttacattcaaaatctaa
ttataaatatgggtgttgtgatatgcttaatgaaatataaattctctttt
aaaggttggtgaataaagatgaaatttttaaaaaaagaaatgttgtattc
cagaaccctctaaatggcacctagaagtcttcactcattgtcttaaacct
atagtaacatttgatttcaaaatcagtaatctcttagatggaaactcagt
gatatgttcactcataagcagaaacaattatcttatagaatgtcaattgt
ctagtcaaataataaggacttttttcaatgtcatttgcaaaataagaagt
gagataatcaccaccagataacagtttcaccaactttatctcacaaaaat
acaaaaatatggtgtttagtcagcagagggtagaccaatggaagaaaagg
tacaaaattccaatcccatagtaacaagattcatgagtattttgaaaaat
taagtggatattaggaatcttgccacaaaaatcagtaactacacgatgca
atttacatgttactattctatatttaaccaattatcacatgtagcatatt
taacataatcctgtacacattaaacacatatagttttatctcttatttga
attatattaatataaaattacaaagagataggacttctttttctgaaata
atgttggtggacagtaccatccgtggctccaaactcacaggagatatcaa
ggaaagatatcataccagttataccttccaaggaagattcccggagcttt
ggaacaactaccttagacgcaataggtctattctc
gaattctctcttccgtctcttatattctgttgctgatgctcacatctatg
gttcctgatttctttcctagtgtttctatctccagagttgtctccctttg
ggttttctttattgtttcttcttccctttttaggtcttgggtggttttgt
tctattccatcacctggttggttgtgttttcctgtaattctttaagggat
ttttgtgttttctctttaaggacttctatctgtttagcagtgttttcctg
taattctttaaggacttctacctttttagcagtgttctcatatatttctt
taagtgagttattaatgaccttcttaaaatcctctaacagcatcatgaga
tatgattttaaatccaaatcttgcttttcaggtgtgttgggggtatccag
gactggctgaggtgggagtgctgggttctgatgatggtgagtgttcttgg
tttccattagtaagattcttaagtttgccttttgccatctgataatctct
ggcattagttgttatagctttctctagctggagcctgttcctcctgtgtt
tctgtcagcctctgttcacagtcctgtgagtccagctctctcctaagtct
cagtggtcagagcactcactccccgcaggcaaactctcctcttgcaggga
aggtgtagagaagcctagcacccagatctgcctcctggatgaagatgaag
acccgaaacagggtctgtcccagaagatgtgttgcctctgcagtctgcac
actctccagcacagactggtctctgagggacttgggacacaagctgtgat
ttttcttatatgtcaagaagagttccttagaaaggtgtgtgtgcatttgt
tttgaaggcacagttttttttttgttgtttttgttttttgttttaacaat
ttgttgtgttgtgtgtggggtgggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_20085425_20086619
seq2: B6Ng01-305D24.b_46_1230

seq1  GAATTCTTCTTAATTTTCCATATATATTTTTCTATGTAGATATCTGTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTAATTTTCCATATATATTTTTCTATGTAGATATCTGTGTA  50

seq1  GTTGATCTTATTCAGTCATTAGAAATGTAAGCTATCAAGCTATTTTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATCTTATTCAGTCATTAGAAATGTAAGCTATCAAGCTATTTTTTAG  100

seq1  TAACAGGAGTTAGTTAATAACAGAAAGTAAGGGAAATAGACCATTTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGAGTTAGTTAATAACAGAAAGTAAGGGAAATAGACCATTTATAA  150

seq1  CTGTTTTCATTACCCTTAAATACATTATTATTATTATTATTATTACTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTCATTACCCTTAAATACATTATTATTATTATTATTATTACTATT  200

seq1  ATTATTATTATTATTGAAAATGTTAATGACTATAGAGTTTAAAGTTGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTATTATTGAAAATGTTAATGACTATAGAGTTTAAAGTTGTTG  250

seq1  CATAAAATTCCTAAGAGATACATTCATGTTATTTTGATTTCTTTTCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATTCCTAAGAGATACATTCATGTTATTTTGATTTCTTTTCATGT  300

seq1  CAACACAATAGGAATTAAAGGAAGTTTTTTTATTATTATCCAGGATATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACAATAGGAATTAAAGGAAGTTTTTTTATTATTATCCAGGATATTA  350

seq1  CAGTAAACTAATATATCTATATCATTCAACATTTTACATTCAAAATCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAACTAATATATCTATATCATTCAACATTTTACATTCAAAATCTAA  400

seq1  TTATAAATATGGGTGTTGTGATATGCTTAATGAAATATAAATTCTCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATATGGGTGTTGTGATATGCTTAATGAAATATAAATTCTCTTTT  450

seq1  AAAGGTTGGTGAATAAAGATGAAATTTTTAAAAAAAGAAATGTTGTATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTGGTGAATAAAGATGAAATTTTTAAAAAAAGAAATGTTGTATTC  500

seq1  CAGAACCCTCTAAATGGCACCTAGAAGTCTTCACTCATTGTCTTAAACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCCTCTAAATGGCACCTAGAAGTCTTCACTCATTGTCTTAAACCT  550

seq1  ATAGTAACATTTGATTTCAAAATCAGTAATCTCTTAGATGGAAACTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAACATTTGATTTCAAAATCAGTAATCTCTTAGATGGAAACTCAGT  600

seq1  GATATGTTCACTCATAAGCAGAAACAATTATCTTATAGAATGTCAATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTTCACTCATAAGCAGAAACAATTATCTTATAGAATGTCAATTGT  650

seq1  CTAGTCAAATAATAAGGACTTTTTTCAATGTCATTTGCAAAATAAGAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCAAATAATAAGGACTTTTTTCAATGTCATTTGCAAAATAAGAAGT  700

seq1  GAGATAATCACCACCAGATAACAGTTTCACCAACTTTATCTCACAAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAATCACCACCAGATAACAGTTTCACCAACTTTATCTCACAAAAAT  750

seq1  ACAAAAATATGGTGTTTAGTCAGCAGAGGGTAGACCAATGGAAGAAAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATATGGTGTTTAGTCAGCAGAGGGTAGACCAATGGAAGAAAAGG  800

seq1  TACAAAATTCCAATCCCATAGTAACAAGATTCATGAGTATTTTGAAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATTCCAATCCCATAGTAACAAGATTCATGAGTATTTTGAAAAAT  850

seq1  TAAGTGGATATTAGGAATCTTGCCACAAAAATCAGTAACTACACGATGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGATATTAGGAATCTTGCCACAAAAATCAGTAACTACACGATGCA  900

seq1  ATTTACATGTTACTATTCTATATTTAACCAATTATCACATGTAGCATATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATGTTACTATTCTATATTTAACCAATTATCACATGTAGCATATT  950

seq1  TAACATAATCCTGTACACATTAAACACATATAGTTTTATCTCTTAATTTG  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAACATAATCCTGTACACATTAAACACATATAGTTTTATCTCTT-ATTTG  999

seq1  AATTATATTAATATAAAATTACAAAGAAGAATAAGGACTTC-TTTTCTGA  1049
      |||||||||||||||||||||||||| |||   |||||||| ||||||||
seq2  AATTATATTAATATAAAATTACAAAG-AGA--TAGGACTTCTTTTTCTGA  1046

seq1  AATAATGTT-GTGGACAAGTAACCATTCAGTGCCCCAAATTCCACA-GAG  1097
      ||||||||| |||||| ||| ||||| |   || ||||| | |||| |||
seq2  AATAATGTTGGTGGAC-AGT-ACCATCCGTGGCTCCAAACT-CACAGGAG  1093

seq1  ATATCAAGGAAAGATAATCATACAAGTTATTACTTCCAAAGAAGATTCCC  1147
      ||||||||||||||| ||||||| ||||||  ||||||| ||||||||||
seq2  ATATCAAGGAAAGAT-ATCATACCAGTTATACCTTCCAAGGAAGATTCCC  1142

seq1  TGTAGCTTTTGAAACAAACTACCTTTAGACGAAATAAGTCTATCTCTC  1195
       | |||||| |||   ||||||| ||||||| |||| |||||| ||||
seq2  -GGAGCTTTGGAA--CAACTACC-TTAGACGCAATAGGTCTAT-TCTC  1185

seq1: chr9_20219271_20219834
seq2: B6Ng01-305D24.g_429_995 (reverse)

seq1  CCCACCCACCCACCCACACAC-ACAC-ACAAATTGTTTAAAC-AAAAACA  47
      |||||||||   ||||||||| |||| |||||||||| |||| |||||||
seq2  CCCACCCAC---CCCACACACAACACAACAAATTGTTAAAACAAAAAACA  47

seq1  AAAACAAC-AAAAAAAAACTGTGCCTTCAAAACAAATGCACACACACC-T  95
      |||||||| ||||||||||||||||||||||||||||||||||||||| |
seq2  AAAACAACAAAAAAAAAACTGTGCCTTCAAAACAAATGCACACACACCTT  97

seq1  TCT-AGGAACTCTTCTTGACATATAAGAAAAATCACAGCTTGTGTCCCAA  144
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGAACTCTTCTTGACATATAAGAAAAATCACAGCTTGTGTCCCAA  147

seq1  GTCCCTCAGAGACCAGTCTGTGCTGGAGAGTGTGCAGACTGCAGAGGCAA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCAGAGACCAGTCTGTGCTGGAGAGTGTGCAGACTGCAGAGGCAA  197

seq1  CACATCTTCTGGGACAGACCCTGTTTCGGGTCTTCATCTTCATCCAGGAG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTTCTGGGACAGACCCTGTTTCGGGTCTTCATCTTCATCCAGGAG  247

seq1  GCAGATCTGGGTGCTAGGCTTCTCTACACCTTCCCTGCAAGAGGAGAGTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCTGGGTGCTAGGCTTCTCTACACCTTCCCTGCAAGAGGAGAGTT  297

seq1  TGCCTGCGGGGAGTGAGTGCTCTGACCACTGAGACTTAGGAGAGAGCTGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCGGGGAGTGAGTGCTCTGACCACTGAGACTTAGGAGAGAGCTGG  347

seq1  ACTCACAGGACTGTGAACAGAGGCTGACAGAAACACAGGAGGAACAGGCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAGGACTGTGAACAGAGGCTGACAGAAACACAGGAGGAACAGGCT  397

seq1  CCAGCTAGAGAAAGCTATAACAACTAATGCCAGAGATTATCAGATGGCAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTAGAGAAAGCTATAACAACTAATGCCAGAGATTATCAGATGGCAA  447

seq1  AAGGCAAACTTAAGAATCTTACTAATGGAAACCAAGAACACTCACCATCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAACTTAAGAATCTTACTAATGGAAACCAAGAACACTCACCATCA  497

seq1  TCAGAACCCAGCACTCCCACCTCAGCCAGTCCTGGATACCCCCAACACAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACCCAGCACTCCCACCTCAGCCAGTCCTGGATACCCCCAACACAC  547

seq1  CTGAAAAGCAAGATTTGGAT  564
      ||||||||||||||||||||
seq2  CTGAAAAGCAAGATTTGGAT  567