BAC Information

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BAC

Clone NameB6Ng01-307O01
Chromosome9 (Build37)
Map Location 94,412,710 - 94,611,995
singlet/doubletdoublet
Overlap gene1190002N15Rik, EG667601, Slc9a9
Upstream geneLOC674371, LOC384967, EG384968
Downstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307O01.bB6Ng01-307O01.g
ACCGA100529GA100530
length1,019854
definitionB6Ng01-307O01.b B6Ng01-307O01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,610,976 - 94,611,995)(94,412,710 - 94,413,555)
sequence
gaattccaaggatgtcagggttgaacatttattgcgtaatctattcaatg
ctgttcttaccatgtaggaaatcccataaaatataactactttttgttag
tgttggccaagttttctactgaatgataagagaagggaacgttccttagc
tttaccttcttcagactgtatcctgcatgaaatatgatgggaggcagcaa
aacgttgaagaagatttctgggtcaaacgtcatctgccaaagaagacaaa
agtcaagtcagatgtgtttacccaacaggaatagcacttttgtgaagatt
gtatgaaggctatatagccatactatcaaattagcaaagagaaaataaga
aagaggaaaaaataaatccagccagtggtggtagacacctttgactccag
cactcaggaggcagaggcaagtagatctctgagttagaggccatcttggg
ctccagagtgacttacagtacaaccagggctacacagtgaaaccctgtct
caaacaaagaaaacaacaacagcaaaagcaaaaagaaaatataaacttag
aaatttgtaaatatggtatcacatagaagaacatttacgctaacaataac
agaaaacaaaactctaaatgaagtttctctgggaaagaaaactttttctt
tttacttgattagtcattcctaattttattttattattctagtttttaac
tgtctagtccagaatgaccttgaattcacaatcctccagcctcagcttcc
ccagcactgggattataggtatgtaccaccatgcatagctcctttttcat
ggctcaggtgtttttaattatgtttcacttttttcttagttggaaagctg
taatgctcacgtttttagctgttgacaagatttaaagagtttcccaaata
aatacatgtagagacttggtcttaatttttctctattttattccactcca
agtttaaaatatacttccaaaactgtggaaaaacagagttgaaaattgaa
aatgcattttcttagcatt

gaattctcttgtcaaataatagcttctgccatttcatcgacatcacagga
caaattctaaaactgatgtaccgactgcgtctcctaagctaatgctagtt
tatggtcttaagtcacaaggaggtaggagtcactgatggctgagtgccac
caacgaggaagaagccagttacgtaaccctgaatgaagttccttttctct
ttctggggaaaacaccgctttatttgttactacaacgtacgtgtagcact
tttcaacttccaaagtgtttttccatatattttctgatcctgtctaataa
tctcctaagaagttaaagcaggcatttgttgtcttcaaagtatgagtact
tatctcacagacatccaataatttatctataagtcacagttggacaagag
taagaaaaaaaaacagaaagaaaaagatttcaaagggatattgtcttagt
cagggtttctattcctgcacaaacatcatgaccaagaagcaagttgggga
ggaaagggtttattcggcttacccttccatactgctgttcatcaccaagg
aagtcaggactggaactcaagcaggtcaggaagcaggagctgatgcagag
gccatggagggatgttcctttactggcttgcttctcctggcttgctcaac
ctactttcttatagaaacccaagactaccagcccagagatggtcccaccc
acaaggggccttttcccccttgattactaattgaggaaaatgcctttaca
gttgggatctgatggaggcatttcctccaactgaagctctttttctcttg
tgttaactccagctgtgtcaaaactagccagtacaatgaccctttgacac
ataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_94610976_94611995
seq2: B6Ng01-307O01.b_45_1063 (reverse)

seq1  AATGCTAGAAAAATGCATTTTC-ATTTTCAACTCTGTTTTTCCACAGTTT  49
      |||||||  ||||||||||||| |||||||||||||||||||||||||||
seq2  AATGCTAAGAAAATGCATTTTCAATTTTCAACTCTGTTTTTCCACAGTTT  50

seq1  TGGAAGTATATTTTAAACTTTGGAGTGGAATAAAATAGAG-AAAATTAAG  98
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  TGGAAGTATATTTTAAAC-TTGGAGTGGAATAAAATAGAGAAAAATTAAG  99

seq1  ACCAAGTCTCTACATGTATTTTATTTGGGAAACTCTTTAAATCTTTGTCA  148
      |||||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  ACCAAGTCTCTACATGTA-TTTATTTGGGAAACTCTTTAAATC-TTGTCA  147

seq1  ACAGCTAAAAACGTGAGCATTACAGCTTTCCAACTAAGAAAAAAGTGAAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTAAAAACGTGAGCATTACAGCTTTCCAACTAAGAAAAAAGTGAAA  197

seq1  CATAATTAAAAACACCTGAGCCATGAAAAAGGAGCTATGCATGGTGGTAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTAAAAACACCTGAGCCATGAAAAAGGAGCTATGCATGGTGGTAC  247

seq1  ATACCTATAATCCCAGTGCTGGGGAAGCTGAGGCTGGAGGATTGTGAATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTATAATCCCAGTGCTGGGGAAGCTGAGGCTGGAGGATTGTGAATT  297

seq1  CAAGGTCATTCTGGACTAGACAGTTAAAAACTAGAATAATAAAATAAAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCATTCTGGACTAGACAGTTAAAAACTAGAATAATAAAATAAAAT  347

seq1  TAGGAATGACTAATCAAGTAAAAAGAAAAAGTTTTCTTTCCCAGAGAAAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATGACTAATCAAGTAAAAAGAAAAAGTTTTCTTTCCCAGAGAAAC  397

seq1  TTCATTTAGAGTTTTGTTTTCTGTTATTGTTAGCGTAAATGTTCTTCTAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTAGAGTTTTGTTTTCTGTTATTGTTAGCGTAAATGTTCTTCTAT  447

seq1  GTGATACCATATTTACAAATTTCTAAGTTTATATTTTCTTTTTGCTTTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATACCATATTTACAAATTTCTAAGTTTATATTTTCTTTTTGCTTTTG  497

seq1  CTGTTGTTGTTTTCTTTGTTTGAGACAGGGTTTCACTGTGTAGCCCTGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTTGTTTTCTTTGTTTGAGACAGGGTTTCACTGTGTAGCCCTGGT  547

seq1  TGTACTGTAAGTCACTCTGGAGCCCAAGATGGCCTCTAACTCAGAGATCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGTAAGTCACTCTGGAGCCCAAGATGGCCTCTAACTCAGAGATCT  597

seq1  ACTTGCCTCTGCCTCCTGAGTGCTGGAGTCAAAGGTGTCTACCACCACTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCTCTGCCTCCTGAGTGCTGGAGTCAAAGGTGTCTACCACCACTG  647

seq1  GCTGGATTTATTTTTTCCTCTTTCTTATTTTCTCTTTGCTAATTTGATAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATTTATTTTTTCCTCTTTCTTATTTTCTCTTTGCTAATTTGATAG  697

seq1  TATGGCTATATAGCCTTCATACAATCTTCACAAAAGTGCTATTCCTGTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTATATAGCCTTCATACAATCTTCACAAAAGTGCTATTCCTGTTG  747

seq1  GGTAAACACATCTGACTTGACTTTTGTCTTCTTTGGCAGATGACGTTTGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAACACATCTGACTTGACTTTTGTCTTCTTTGGCAGATGACGTTTGA  797

seq1  CCCAGAAATCTTCTTCAACGTTTTGCTGCCTCCCATCATATTTCATGCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAATCTTCTTCAACGTTTTGCTGCCTCCCATCATATTTCATGCAG  847

seq1  GATACAGTCTGAAGAAGGTAAAGCTAAGGAACGTTCCCTTCTCTTATCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGTCTGAAGAAGGTAAAGCTAAGGAACGTTCCCTTCTCTTATCAT  897

seq1  TCAGTAGAAAACTTGGCCAACACTAACAAAAAGTAGTTATATTTTATGGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGAAAACTTGGCCAACACTAACAAAAAGTAGTTATATTTTATGGG  947

seq1  ATTTCCTACATGGTAAGAACAGCATTGAATAGATTACGCAATAAATGTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTACATGGTAAGAACAGCATTGAATAGATTACGCAATAAATGTTC  997

seq1  AACCCTGACATCCTTGGAATTC  1020
      ||||||||||||||||||||||
seq2  AACCCTGACATCCTTGGAATTC  1019


seq1: chr9_94412710_94413555
seq2: B6Ng01-307O01.g_69_922

seq1  GAATTCTCTTGTCAAATAATAGCTTCTGCCATTTCATCGACATCACAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTGTCAAATAATAGCTTCTGCCATTTCATCGACATCACAGGA  50

seq1  CAAATTCTAAAACTGATGTACCGACTGCGTCTCCTAAGCTAATGCTAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCTAAAACTGATGTACCGACTGCGTCTCCTAAGCTAATGCTAGTT  100

seq1  TATGGTCTTAAGTCACAAGGAGGTAGGAGTCACTGATGGCTGAGTGCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTCTTAAGTCACAAGGAGGTAGGAGTCACTGATGGCTGAGTGCCAC  150

seq1  CAACGAGGAAGAAGCCAGTTACGTAACCCTGAATGAAGTTCCTTTTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGAGGAAGAAGCCAGTTACGTAACCCTGAATGAAGTTCCTTTTCTCT  200

seq1  TTCTGGGGAAAACACCGCTTTATTTGTTACTACAACGTACGTGTAGCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGGAAAACACCGCTTTATTTGTTACTACAACGTACGTGTAGCACT  250

seq1  TTTCAACTTCCAAAGTGTTTTTCCATATATTTTCTGATCCTGTCTAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACTTCCAAAGTGTTTTTCCATATATTTTCTGATCCTGTCTAATAA  300

seq1  TCTCCTAAGAAGTTAAAGCAGGCATTTGTTGTCTTCAAAGTATGAGTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAAGAAGTTAAAGCAGGCATTTGTTGTCTTCAAAGTATGAGTACT  350

seq1  TATCTCACAGACATCCAATAATTTATCTATAAGTCACAGTTGGACAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCACAGACATCCAATAATTTATCTATAAGTCACAGTTGGACAAGAG  400

seq1  TAAGAAAAAAAAACAGAAAGAAAAAGATTTCAAAGGGATATTGTCTTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAAAAAACAGAAAGAAAAAGATTTCAAAGGGATATTGTCTTAGT  450

seq1  CAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGTTGGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGTTGGGGA  500

seq1  GGAAAGGGTTTATTCGGCTTACCCTTCCATACTGCTGTTCATCACCAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGGTTTATTCGGCTTACCCTTCCATACTGCTGTTCATCACCAAGG  550

seq1  AAGTCAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAG  600

seq1  GCCATGGAGGGATGTTCC-TTACTGGCTTGCTTCTCCTGGCTTGCTCAAC  649
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCCATGGAGGGATGTTCCTTTACTGGCTTGCTTCTCCTGGCTTGCTCAAC  650

seq1  CTACTTTCTTATAG-AACCCAAGACTACCAGCCCAGAGATGGTCCCACCC  698
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTACTTTCTTATAGAAACCCAAGACTACCAGCCCAGAGATGGTCCCACCC  700

seq1  ACAAGGGGCC-TTTCCCCCTTGATTACTAATTGAGG-AAATGCC-TTACA  745
      |||||||||| ||||||||||||||||||||||||| ||||||| |||||
seq2  ACAAGGGGCCTTTTCCCCCTTGATTACTAATTGAGGAAAATGCCTTTACA  750

seq1  GTT-GGATCTGATGGAGGCATTTCCT-CAACTGAAGCTC-CTTTCTC-TG  791
      ||| |||||||||||||||||||||| ||||||||||||  |||||| ||
seq2  GTTGGGATCTGATGGAGGCATTTCCTCCAACTGAAGCTCTTTTTCTCTTG  800

seq1  TGATAACTCCAGCTGTGTCAAAACTAGCCAGTACAATTGACCCCTTGACA  841
      || ||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  TGTTAACTCCAGCTGTGTCAAAACTAGCCAGTACAA-TGACCCTTTGACA  849

seq1  CACAA  846
      || ||
seq2  CATAA  854


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