BAC Information

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BAC

Clone NameB6Ng01-308P07
Chromosome9 (Build37)
Map Location 17,014,306 - 17,170,541
singlet/doubletdoublet
Overlap genenone
Upstream geneFat3, EG434373, LOC100040074
Downstream geneLOC100040090, LOC244710, LOC100040508, EG665548, LOC665554, LOC665567, Chordc1, Naalad2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308P07.bB6Ng01-308P07.g
ACCGA101319GA101320
length9601,184
definitionB6Ng01-308P07.b B6Ng01-308P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,169,586 - 17,170,541)(17,014,306 - 17,015,496)
sequence
gaattctcaactgaggaatcttgaggggatgagaaacacctacaaaaaca
ttttacttatgacttctttagacattttttatttgccattttatactcat
tgctacattgctatgcatttatcttcccacattccctaattaaaggccac
caatttatagggcaaatatggacaagaaggggacttaacacattttaaaa
tatttatttatttatttttgtgtgtgtactataattatgttgtttttctg
ctcatcccccaaccctcacatagagcacactcttaaaaattaccatttga
atcaaagggagaacagtatttctaagggtgcaaaattatgtgaccttaag
ttgttttaaaattggaccatttgagttctcatctgcaatcttctatttgt
tcttgtgttttaagcttccctttatttaacttctctccatctataccagc
tgttacttcaacaaactgtgaacaaaccacatctttccttaaagataccc
caaaggtgaatgctttttttaagattcttcctgcactaattcttcaacag
ggccccaggggcagcaaaatatgtttgtaatttgcatttctctaattagt
gagttagcacatttgctacaactacagtcagcagctgctacttgtatttc
ctgtatgaatgatacctcacgataccaaagagtattccctctgaatcgtc
aattagtgaagctatcgtatagaaaacatggatatacctcttgtgtgctt
tcctttaaataaacttcaattccaactatttgcaatgtttaaaaacaaga
aaatctaaaaactcttgtgtttgactcctccatcactctgtgaaaggaag
cagcaatacaaagtagtctgcataagatattttagatcaggacgaacctg
ttgtaacttaacaatgaatcgtaatagagtgtataggtatttggtggggg
gaggatttgg

gaattcaataaatagtgatctgaaggctactttgagaatataagataaag
tctgctgcaagaagaaaaactatataaaagatgaaacattgattaaaaat
ggcaatcaagttttctcaagagaggaaaaaatctcacccattcattcagg
atctaggacctgtatcagacactgaagcaagcatatcacgaacagtattt
catgttatcctgacagtgctctgaaggaagggtatttatgaagtcttgct
cgtgtccagagtttctgttgttattggtaggacttttaacttttgtctga
gaggccattgtcacttgttggtagtttttagcagcagaaatgaaatcagg
ggccagagacacttttttctttcagtaaacatattctaaatgagaagact
gagtcagtcagagccaggctgactccatgacaggctgcaaaccgacaggt
caggagactagacttaagtttctgtttcccagaactagagaagaaaaaaa
catgttagttccagaaaaacccatcttcatgggcagctaatcaggaagcc
actccaccacctatgctgagccaacttcatgggcagccaataaggagctg
taaaagttgctccagcacctatgtatagtcatgcaataaaatatatgtat
ggcactgtgtccacaagtggatccaattgaggaaaccaaagtctgatgcc
gaagctgtgtctcatgatgacccttagcccacaaaccttaaaacttcagt
aggattattgcccctatgttagaaagtgagatgcaaactcttttatagtt
gcctcacatatgtattaaggaaggatccatattctcagaaaatacttgat
atcattattatgacaaccccttgtggggggttgtccatctcataaatatt
cataaacttattcaaatccccgcacagggcccaatgtgctgtgtccagca
cattccagtctctctagaattttcgtttgtttgcagaacttctgctgata
ctaccgtgcctctaggatatcttctgttttaagtaaagtataagagaata
ccccaacagtattatactatattggtatcattatcttggctgaaatagat
atttccatatagtgtctctcctaattcagatacgagagctatcaaattat
gctactaacctctgggggttttccctaaaataat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_17169586_17170541
seq2: B6Ng01-308P07.b_48_1007 (reverse)

seq1  CCAAATCCTCCCCAC----AATACCTATACACTCTATTACGATTCATTGT  46
      ||||||||||||| |    |||||||||||||||||||||||||||||||
seq2  CCAAATCCTCCCCCCACCAAATACCTATACACTCTATTACGATTCATTGT  50

seq1  TAAGTTACAACAGGTTCGTCCTGATCTAAAATATCTTATGCAGACTACTT  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTACAACAGGTTCGTCCTGATCTAAAATATCTTATGCAGACTACTT  100

seq1  TGTATTGCTGCTTCCTTTCACAGAGTGATGGAGGAGTCAAACACAAGAGT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGCTGCTTCCTTTCACAGAGTGATGGAGGAGTCAAACACAAGAGT  150

seq1  TTTTAGATTTTCTTGTTTTTAAACATTGCAAATAGTTGGAATTGAAGTTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGATTTTCTTGTTTTTAAACATTGCAAATAGTTGGAATTGAAGTTT  200

seq1  ATTTAAAGGAAAGCACACAAGAGGTATATCCATGTTTTCTATACGATAGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGGAAAGCACACAAGAGGTATATCCATGTTTTCTATACGATAGC  250

seq1  TTCACTAATTGACGATTCAGAGGGAATACTCTTTGGTATCGTGAGGTATC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTAATTGACGATTCAGAGGGAATACTCTTTGGTATCGTGAGGTATC  300

seq1  ATTCATACAGGAAATACAAGTAGCAGCTGCTGACTGTAGTTGTAGCAAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATACAGGAAATACAAGTAGCAGCTGCTGACTGTAGTTGTAGCAAAT  350

seq1  GTGCTAACTCACTAATTAGAGAAATGCAAATTACAAACATATTTTGCTGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAACTCACTAATTAGAGAAATGCAAATTACAAACATATTTTGCTGC  400

seq1  CCCTGGGGCCCTGTTGAAGAATTAGTGCAGGAAGAATCTTAAAAAAAGCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGGCCCTGTTGAAGAATTAGTGCAGGAAGAATCTTAAAAAAAGCA  450

seq1  TTCACCTTTGGGGTATCTTTAAGGAAAGATGTGGTTTGTTCACAGTTTGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTTTGGGGTATCTTTAAGGAAAGATGTGGTTTGTTCACAGTTTGT  500

seq1  TGAAGTAACAGCTGGTATAGATGGAGAGAAGTTAAATAAAGGGAAGCTTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAACAGCTGGTATAGATGGAGAGAAGTTAAATAAAGGGAAGCTTA  550

seq1  AAACACAAGAACAAATAGAAGATTGCAGATGAGAACTCAAATGGTCCAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAGAACAAATAGAAGATTGCAGATGAGAACTCAAATGGTCCAAT  600

seq1  TTTAAAACAACTTAAGGTCACATAATTTTGCACCCTTAGAAATACTGTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACAACTTAAGGTCACATAATTTTGCACCCTTAGAAATACTGTTC  650

seq1  TCCCTTTGATTCAAATGGTAATTTTTAAGAGTGTGCTCTATGTGAGGGTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTGATTCAAATGGTAATTTTTAAGAGTGTGCTCTATGTGAGGGTT  700

seq1  GGGGGATGAGCAGAAAAACAACATAATTATAGTACACACACAAAAATAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGATGAGCAGAAAAACAACATAATTATAGTACACACACAAAAATAAA  750

seq1  TAAATAAATATTTTAAAATGTGTTAAGTCCCCTTCTTGTCCATATTTGCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATATTTTAAAATGTGTTAAGTCCCCTTCTTGTCCATATTTGCC  800

seq1  CTATAAATTGGTGGCCTTTAATTAGGGAATGTGGGAAGATAAATGCATAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAATTGGTGGCCTTTAATTAGGGAATGTGGGAAGATAAATGCATAG  850

seq1  CAATGTAGCAATGAGTATAAAATGGCAAATAAAAAATGTCTAAAGAAGTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAGCAATGAGTATAAAATGGCAAATAAAAAATGTCTAAAGAAGTC  900

seq1  ATAAGTAAAATGTTTTTGTAGGTGTTTCTCATCCCCTCAAGATTCCTCAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAAAATGTTTTTGTAGGTGTTTCTCATCCCCTCAAGATTCCTCAG  950

seq1  TTGAGAATTC  956
      ||||||||||
seq2  TTGAGAATTC  960


seq1: chr9_17014306_17015496
seq2: B6Ng01-308P07.g_67_1250

seq1  GAATTCAATAAATAGTGATCTGAAGGCTACTTTGAGAATATAAGATAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAATAGTGATCTGAAGGCTACTTTGAGAATATAAGATAAAG  50

seq1  TCTGCTGCAAGAAGAAAAACTATATAAAAGATGAAACATTGATTAAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGCAAGAAGAAAAACTATATAAAAGATGAAACATTGATTAAAAAT  100

seq1  GGCAATCAAGTTTTCTCAAGAGAGGAAAAAATCTCACCCATTCATTCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATCAAGTTTTCTCAAGAGAGGAAAAAATCTCACCCATTCATTCAGG  150

seq1  ATCTAGGACCTGTATCAGACACTGAAGCAAGCATATCACGAACAGTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGACCTGTATCAGACACTGAAGCAAGCATATCACGAACAGTATTT  200

seq1  CATGTTATCCTGACAGTGCTCTGAAGGAAGGGTATTTATGAAGTCTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTATCCTGACAGTGCTCTGAAGGAAGGGTATTTATGAAGTCTTGCT  250

seq1  CGTGTCCAGAGTTTCTGTTGTTATTGGTAGGACTTTTAACTTTTGTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCCAGAGTTTCTGTTGTTATTGGTAGGACTTTTAACTTTTGTCTGA  300

seq1  GAGGCCATTGTCACTTGTTGGTAGTTTTTAGCAGCAGAAATGAAATCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCATTGTCACTTGTTGGTAGTTTTTAGCAGCAGAAATGAAATCAGG  350

seq1  GGCCAGAGACACTTTTTTCTTTCAGTAAACATATTCTAAATGAGAAGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAGACACTTTTTTCTTTCAGTAAACATATTCTAAATGAGAAGACT  400

seq1  GAGTCAGTCAGAGCCAGGCTGACTCCATGACAGGCTGCAAACCGACAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGTCAGAGCCAGGCTGACTCCATGACAGGCTGCAAACCGACAGGT  450

seq1  CAGGAGACTAGACTTAAGTTTCTGTTTCCCAGAACTAGAGAAGAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGACTAGACTTAAGTTTCTGTTTCCCAGAACTAGAGAAGAAAAAAA  500

seq1  CATGTTAGTTCCAGAAAAACCCATCTTCATGGGCAGCTAATCAGGAAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTAGTTCCAGAAAAACCCATCTTCATGGGCAGCTAATCAGGAAGCC  550

seq1  ACTCCACCACCTATGCTGAGCCAACTTCATGGGCAGCCAATAAGGAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACCACCTATGCTGAGCCAACTTCATGGGCAGCCAATAAGGAGCTG  600

seq1  TAAAAGTTGCTCCAGCACCTATGTATAGTCATGCAATAAAATATATGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTTGCTCCAGCACCTATGTATAGTCATGCAATAAAATATATGTAT  650

seq1  GGCACTGTGTCCACAAGTGGATCCAATTGAGGAAACCAAAGTCTGATGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGTGTCCACAAGTGGATCCAATTGAGGAAACCAAAGTCTGATGCC  700

seq1  GAAGCTGTGTCTCATGATGACCCTTAGCCCACAAACCTTAAAACTTCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGTGTCTCATGATGACCCTTAGCCCACAAACCTTAAAACTTCAGT  750

seq1  AGGATTATTGCCCCTATGTTAGAAAGTGAGATGCAAACTCTTTTATAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTATTGCCCCTATGTTAGAAAGTGAGATGCAAACTCTTTTATAGTT  800

seq1  GCCTCACATATGTATTAAGGAAGGATCCATATTCTCAGAAAATACTTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACATATGTATTAAGGAAGGATCCATATTCTCAGAAAATACTTGAT  850

seq1  ATCATTATTATGACAACCCCTTGT-GGGGGTTGTCCATCTCATAAATATT  899
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATCATTATTATGACAACCCCTTGTGGGGGGTTGTCCATCTCATAAATATT  900

seq1  CATAAAACTTATTCAAAATCCCCGCACAGGGCCCAATGTGCTGTGGTCCA  949
      ||| |||||||||| ||||||||||||||||||||||||||||| |||||
seq2  CAT-AAACTTATTC-AAATCCCCGCACAGGGCCCAATGTGCTGT-GTCCA  947

seq1  GCACATTCCAGTCTCTCTAGAATTTTCGTTTGTTTGCAGAACTTCTGCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTCCAGTCTCTCTAGAATTTTCGTTTGTTTGCAGAACTTCTGCTG  997

seq1  ATACTACCGTTGCCTCTAGGATATCTTCTGTTTTAAGTAAAGTAATAAGA  1049
      ||||||||| ||||||||||||||||||||||||||||||||| ||||||
seq2  ATACTACCG-TGCCTCTAGGATATCTTCTGTTTTAAGTAAAGT-ATAAGA  1045

seq1  G-ATACCCCAACAGGTATTATAATTATATTGTTATCATAATCTTTGCTG-  1097
      | ||||||||||| ||||||| | ||||||| |||||| ||||| |||| 
seq2  GAATACCCCAACA-GTATTAT-ACTATATTGGTATCATTATCTTGGCTGA  1093

seq1  AATAGTATATTT-CATATAGTGTCTTCTCCTATTAAAGAGTAGGGAGAGA  1146
      ||||| |||||| ||||||||||| ||||||| |  ||| ||  ||||| 
seq2  AATAG-ATATTTCCATATAGTGTC-TCTCCTAATTCAGA-TA-CGAGAGC  1139

seq1  TATTCAATTATGCTAATTTAACCTCTGGGG--TTTTCCTAAAATAAT  1191
      |||  ||||||||||   ||||||||||||  ||| |||||||||||
seq2  TATCAAATTATGCTA--CTAACCTCTGGGGGTTTTCCCTAAAATAAT  1184


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