BAC Information

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BAC

Clone NameB6Ng01-310L16
Chromosome9 (Build37)
Map Location 120,908,928 - 121,080,247
singlet/doubletdoublet
Overlap geneUlk4
Upstream geneCmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010, Ctnnb1
Downstream geneTrak1, Cck, Lyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310L16.bB6Ng01-310L16.g
ACCGA102631GA102632
length5301,113
definitionB6Ng01-310L16.b B6Ng01-310L16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,079,712 - 121,080,247)(120,908,928 - 120,910,033)
sequence
tcctttacccacataaagtgtgctgtgggtgcaatattttcatgctttca
tttccatgaattgagcaccttctctgcatgtactagagtgtttcctcggt
ctgagatttaaatcagcccccgtctctcctctcctcttcttccttccaat
cttccctccctccccccaccttggcctcttttcgcatttacttctccaag
gtttatttccactgggacacggcagctgctcctagtgtgtcactcctggc
tctcccatcactcactgtcccagtgtcctccacgtgtgtcagctattttc
tcagggttttctttctccatgaagagacctgtcctggagtctctgacaag
ttccagtgtggacaggcggccctcagagctggtcacagccagcaccgtgc
agtcatgcagggaattccttcacttttcctgggttcagtgttcttgtctt
gccttatttctacctggtgactaagcaggcatcgggaagaggagctgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gaattcccaaggggaagctgtcctctcctagctaatgatgatgccaatct
ggtcactcagagaaacgaggcctcaaaagtaagcttgaagctggggtgtc
acaggaagcctgaggaaccaaggtgagccacgagtaagcttacaggagat
accccccccccccccgcccagtgcccaaacatcaactcttcaaaggcaag
ctaagctctaatataaactggaatgggggtcatcggataagtgtaagctg
tgcaactctgacagcctgcccacctccccccagtccatggtgggaggcag
aacacctgtgacatctgcatgtgtgtcatagcatgtgtgcacctgtgcac
atgtgtgtgcagacacagtaataaaaacaaagaggaatttattaaagtga
aaaggaagaggagttcgtgttggtctgtaaattacacagatttttttaat
ccaatgcttattcatttggcaaattccagaatatgcgccactgtcctggt
tggaaacagtttccagatacaccaccatcgaagccagagcgggagctcag
tgctggcctagcatgcatgaaggcctggctttgaacccatgacacactgc
ataagccatgtgtggctgaacatacccatgatcccagggctaaggagtta
gaggcagggggatcaggagttcaaggccatcctaggctacaaagggagtt
tgaagccagtctctacatgagtctgggcctctaacaaaaaacatccagac
atggaaatctcagtgaggtattcctggtcctgaagaaagaattttattct
tataaacaaaacacccacagtatgaacgaattctatgcatatgtattcat
gcatgtatattttataaattaacttatacatatgcataatccatttacac
atatgtaacagagcagaacacggtcttttatcatcttctgggcagagtca
tgggcacagggcattggtgtagctgccactacagggcctcagcgtgtgtg
ggctgggagtgtgggaggttttgcaggctcagctcccttgaaagagatgc
tccacacacgcttcttctctgcaagcaagcagatcagtattctgggtact
gagaacacaatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_121079712_121080247
seq2: B6Ng01-310L16.b_50_585 (reverse)

seq1  ACACACACACACACACACACACACACACACACACAGCTCCTCTTCCCGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACAGCTCCTCTTCCCGAT  50

seq1  GCCTGCTTAGTCACCAGGTAGAAATAAGGCAAGACAAGAACACTGAACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTTAGTCACCAGGTAGAAATAAGGCAAGACAAGAACACTGAACCC  100

seq1  AGGAAAAGTGAAGGAATTCCCTGCATGACTGCACGGTGCTGGCTGTGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGTGAAGGAATTCCCTGCATGACTGCACGGTGCTGGCTGTGACC  150

seq1  AGCTCTGAGGGCCGCCTGTCCACACTGGAACTTGTCAGAGACTCCAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGAGGGCCGCCTGTCCACACTGGAACTTGTCAGAGACTCCAGGAC  200

seq1  AGGTCTCTTCATGGAGAAAGAAAACCCTGAGAAAATAGCTGACACACGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCTTCATGGAGAAAGAAAACCCTGAGAAAATAGCTGACACACGTG  250

seq1  GAGGACACTGGGACAGTGAGTGATGGGAGAGCCAGGAGTGACACACTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACACTGGGACAGTGAGTGATGGGAGAGCCAGGAGTGACACACTAGG  300

seq1  AGCAGCTGCCGTGTCCCAGTGGAAATAAACCTTGGAGAAGTAAATGCGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTGCCGTGTCCCAGTGGAAATAAACCTTGGAGAAGTAAATGCGAA  350

seq1  AAGAGGCCAAGGTGGGGGGAGGGAGGGAAGATTGGAAGGAAGAAGAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCCAAGGTGGGGGGAGGGAGGGAAGATTGGAAGGAAGAAGAGGAG  400

seq1  AGGAGAGACGGGGGCTGATTTAAATCTCAGACCGAGGAAACACTCTAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGACGGGGGCTGATTTAAATCTCAGACCGAGGAAACACTCTAGTA  450

seq1  CATGCAGAGAAGGTGCTCAATTCATGGAAATGAAAGCATGAAAATATTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGAGAAGGTGCTCAATTCATGGAAATGAAAGCATGAAAATATTGC  500

seq1  ACCCACAGCACACTTTATGTGGGTAAAGGAGAATTC  536
      ||||||||||||||||||||||||||||||||||||
seq2  ACCCACAGCACACTTTATGTGGGTAAAGGAGAATTC  536

seq1: chr9_120908928_120910033
seq2: B6Ng01-310L16.g_66_1178

seq1  GAATTCCCAAGGGGAAGCTGTCCTCTCCTAGCTAATGATGATGCCAATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAGGGGAAGCTGTCCTCTCCTAGCTAATGATGATGCCAATCT  50

seq1  GGTCACTCAGAGAAACGAGGCCTCAAAAGTAAGCTTGAAGCTGGGGTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTCAGAGAAACGAGGCCTCAAAAGTAAGCTTGAAGCTGGGGTGTC  100

seq1  ACAGGAAGCCTGAGGAACCAAGGTGAGCCACGAGTAAGCTTACAGGAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGCCTGAGGAACCAAGGTGAGCCACGAGTAAGCTTACAGGAGAT  150

seq1  ACCCCCCCCCCCCCCGCCCAGTGCCCAAACATCAACTCTTCAAAGGCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCCCCCCCCCGCCCAGTGCCCAAACATCAACTCTTCAAAGGCAAG  200

seq1  CTAAGCTCTAATATAAACTGGAATGGGGGTCATCGGATAAGTGTAAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTCTAATATAAACTGGAATGGGGGTCATCGGATAAGTGTAAGCTG  250

seq1  TGCAACTCTGACAGCCTGCCCACCTCCCCCCAGTCCATGGTGGGAGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTCTGACAGCCTGCCCACCTCCCCCCAGTCCATGGTGGGAGGCAG  300

seq1  AACACCTGTGACATCTGCATGTGTGTCATAGCATGTGTGCACCTGTGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTGTGACATCTGCATGTGTGTCATAGCATGTGTGCACCTGTGCAC  350

seq1  ATGTGTGTGCAGACACAGTAATAAAAACAAAGAGGAATTTATTAAAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGCAGACACAGTAATAAAAACAAAGAGGAATTTATTAAAGTGA  400

seq1  AAAGGAAGAGGAGTTCGTGTTGGTCTGTAAATTACACAGATTTTTTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGAGGAGTTCGTGTTGGTCTGTAAATTACACAGATTTTTTTAAT  450

seq1  CCAATGCTTATTCATTTGGCAAATTCCAGAATATGCGCCACTGTCCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCTTATTCATTTGGCAAATTCCAGAATATGCGCCACTGTCCTGGT  500

seq1  TGGAAACAGTTTCCAGATACACCACCATCGAAGCCAGAGCGGGAGCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACAGTTTCCAGATACACCACCATCGAAGCCAGAGCGGGAGCTCAG  550

seq1  TGCTGGCCTAGCATGCATGAAGGCCTGGCTTTGAACCCATGACACACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCCTAGCATGCATGAAGGCCTGGCTTTGAACCCATGACACACTGC  600

seq1  ATAAGCCATGTGTGGCTGAACATACCCATGATCCCAGGGCTAAGGAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCATGTGTGGCTGAACATACCCATGATCCCAGGGCTAAGGAGTTA  650

seq1  GAGGCAGGGGGATCAGGAGTTCAAGGCCATCCTAGGCTACAAAGGGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGGGGATCAGGAGTTCAAGGCCATCCTAGGCTACAAAGGGAGTT  700

seq1  TGAAGCCAGTCTCTACATGAGTCTGGGCCTCTAACAAAAAACATCCAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCAGTCTCTACATGAGTCTGGGCCTCTAACAAAAAACATCCAGAC  750

seq1  ATGGAAATCTCAGGTGAGGTATTCCTGGTCCTGAAGAAAGAATTTTATTC  800
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATGGAAATCTCA-GTGAGGTATTCCTGGTCCTGAAGAAAGAATTTTATTC  799

seq1  TTATAAACAAAACACCCACAGTATGAACGAATTCTATGCATATGTATTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAACAAAACACCCACAGTATGAACGAATTCTATGCATATGTATTCA  849

seq1  TGCATGTATA-TTTATAAATTAACTTATACATATGCATAATCCATTTACA  899
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTATATTTTATAAATTAACTTATACATATGCATAATCCATTTACA  899

seq1  CATATGTAACAGAGCAGAACACGGTC-TTTATCATCTTCTGGGCAGAGTC  948
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATATGTAACAGAGCAGAACACGGTCTTTTATCATCTTCTGGGCAGAGTC  949

seq1  AT-GGCACAGGGCATTGGTGTAGCTGCCACTACA-GGCCTCAGCGTGTGT  996
      || ||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGGGCACAGGGCATTGGTGTAGCTGCCACTACAGGGCCTCAGCGTGTGT  999

seq1  GGGCTGGGAGTGTGGGAGGTGTTTGCA-GCTCAGGCTCCC-TGAAAGAGA  1044
      |||||||||||||||||||| |||||| ||||| |||||| |||||||||
seq2  GGGCTGGGAGTGTGGGAGGT-TTTGCAGGCTCA-GCTCCCTTGAAAGAGA  1047

seq1  TGCTCCACACA-GCT--CTCTCTGCAGGC-AGCAGATCCAGTATTCT-GG  1089
      ||||||||||| |||   |||||||| || ||||||| ||||||||| ||
seq2  TGCTCCACACACGCTTCTTCTCTGCAAGCAAGCAGAT-CAGTATTCTGGG  1096

seq1  TACTGAGAACACAATCA  1106
      |||||||||||||||||
seq2  TACTGAGAACACAATCA  1113