BAC Information

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BAC

Clone NameB6Ng01-311D11
Chromosome9 (Build37)
Map Location 92,766,730 - 92,857,800
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009
Downstream geneLOC100040114, LOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311D11.bB6Ng01-311D11.g
ACCGA102989GA102990
length1,1751,089
definitionB6Ng01-311D11.b B6Ng01-311D11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,856,625 - 92,857,800)(92,766,730 - 92,767,823)
sequence
gaattccagggtaggtcatctctatgttaatctgttgggtccatgtctat
ggacattctattaccagggtgctggggctggaaacttgctggggagatct
gggaactgttactgaagaagtagctgagaaagtctggaaattgctgctgt
cccattgtccttgctttagggacattccaacctgggcatgaaggctggag
cctgggatttttctattagtaattgacttgcctgggcttgctagacttgc
ccagtttttatgcctagtctccttaactgccaatttgaagtctttcatag
aatcagcctggccttctcagtgaagagctggcagaaagaagttagggggg
tgggaagcatgatcaaaatggaatatatatatatatataataaaaaaaca
gaaaattaattgtttaaaatgataacatttgaaacagaagttggcatgca
cacgttctacagtatctttcttctatgctatttaatgacctgtgccctac
catctgctgagtatgtcaatgaacttcatgaatatggaataatgaaaatt
ttcttaaattcaactgaacccagaggctctgttccacccatttctaacat
gttctgagtaagttgttgtccttgctcaaattttaggagacaagtcaaga
actattaaattattaaatgtacattttatgtttactgaagaattctcgac
ctttttttgtccttggaaatacgtttatataatgtttcaactaatggact
tcaaaaccattgttttcgggaacatattttggaaagctctaaagagtatg
agtctcccagtgtgactaatttataactgaaaagcaaaaaaccaggaaaa
tttcacctgcgatgttattgcccctccctccccattcaaattgccacaag
atctaaaatgaaactgctctatgtaatttaaacgcaatcatgggtattgt
atctagcactactcttttcagcttgacctagtttagcctctcctttcaat
cacgattcatctgggcagggaaaggacatcatattaaatttctttgcaac
ttgatattaaccactgttgccctcaaatagtgcaaggaaataaagaagcc
ttcacaataaggcaccgaatgagttattacctgtatatgcatttgagatt
tacaggccaaggtttaagtctcaca
gaattctcctttgacttcaacagctaaacttaatgttctgcaatgtcatt
cagggaacagagcttgctgtcttatttttatccagtagaagggagagctt
ggctgtgcttagaggatggtaaagtatcaggaacaggtgggagttggagc
ctgactgtaaagtgacatcataaagttagtcgtatactcttccaacacag
aagagaagcactgtgatctatttttttaattatatgaatatagcagatgc
agcaaagtgggaaatgtgcatagttaacttcccaggaaaatgagagttct
agcacattccctatgctcagagctattttctcaaggagaatcgtgtgctc
tctcgccttgtagtgggtgaacatttctctcctgtaacttctttctctgg
aacagagaacggtagataatacacataatttatttacttaattttttttt
gatgtctctgcatttgcatctccctgggtgcagggttcaaatgggtgcaa
gtgcgaggccaagggacaactgctgaagttgtacatcagcagttatgaac
cttgttctgtgaaacacagtctggccctgaacctgaagcttgcccatttt
gctagactggctgacaaggaagggatggagatctgtctctccgatgttgg
gttacaagtgtgtgttactggatccctgtttggtgcttgtttgctttttc
ttctcttctagatttaaggatcaaactcacgtcctgtgcttacatggaaa
gtgcatactttaatgactaagccgtccctttggacctttcagttatttgc
ataacattaaggcaaatttaagttgtcatttcttaaacaaaaagggatgt
ctttataccaaccctgtagaaaattctactaggaaattttgtattgaaaa
caatagttctaatgtttactaagtgtgattataaagttgggccatgaaat
catacggctgtttaacatagagttaccaagtgggtttaaatatcaagtta
taatgatctccatttctgtcacaatcataatatgatttctatgtatacaa
ctatatagaatactttattttcctaaaagtgatcatcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_92856625_92857800
seq2: B6Ng01-311D11.b_46_1220 (reverse)

seq1  TGTGA-ACTTAACCTTTG--CTGTTAATCTTCAAAATTGCATATACAGGT  47
      ||||| |||||| | |||  |||| |||| |||||  |||||||||||||
seq2  TGTGAGACTTAAACCTTGGCCTGTAAATC-TCAAA--TGCATATACAGGT  47

seq1  AATTAACTCATCGGGTGCTTTATTGTG-AGGC-TCTTTTATTCTTTGCAC  95
      || ||||||||  ||||| |||||||| |||| |||||  ||| ||||||
seq2  AA-TAACTCATTCGGTGCCTTATTGTGAAGGCTTCTTTATTTCCTTGCAC  96

seq1  TTATTTTGAGGGCAACAGTTGTTAATTATCAAGTTGCAAAAGAAATTAAA  145
      |   ||||||||||||||| ||||| ||||||||||| ||||||||| ||
seq2  T--ATTTGAGGGCAACAGTGGTTAA-TATCAAGTTGC-AAAGAAATTTAA  142

seq1  TATGATGTTCCTTTCCCTG-CCAGATGAATCGTGATTGAAAGGAGAGGCT  194
      ||||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  TATGATG-TCCTTTCCCTGCCCAGATGAATCGTGATTGAAAGGAGAGGCT  191

seq1  AAACTAGGTCAAGCTG-AAAGAGTAGTGCTAGATACAATA-CCATGATTG  242
      |||||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  AAACTAGGTCAAGCTGAAAAGAGTAGTGCTAGATACAATACCCATGATTG  241

seq1  CGTTTAAATTACATAGAGCAGTTTCATTTTAGATCTTGTGGCAATTTGAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTAAATTACATAGAGCAGTTTCATTTTAGATCTTGTGGCAATTTGAA  291

seq1  TGGGGAGGGAGGGGCAATAACATCGCAGGTGAAATTTTCCTGGTTTTTTG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGGGAGGGGCAATAACATCGCAGGTGAAATTTTCCTGGTTTTTTG  341

seq1  CTTTTCAGTTATAAATTAGTCACACTGGGAGACTCATACTCCTTAGAGCT  392
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTTTCAGTTATAAATTAGTCACACTGGGAGACTCATACTCTTTAGAGCT  391

seq1  TTCCAAAATATGTTCCCGAAAACAATGGTTTTGAAGTCCATTAGTTGAAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAATATGTTCCCGAAAACAATGGTTTTGAAGTCCATTAGTTGAAA  441

seq1  CATTATATAAACGTATTTCCAAGGACAAAAAAAGGTCGAGAATTCTTCAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATATAAACGTATTTCCAAGGACAAAAAAAGGTCGAGAATTCTTCAG  491

seq1  TAAACATAAAATGTACATTTAATAATTTAATAGTTCTTGACTTGTCTCCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATAAAATGTACATTTAATAATTTAATAGTTCTTGACTTGTCTCCT  541

seq1  AAAATTTGAGCAAGGACAACAACTTACTCAGAACATGTTAGAAATGGGTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTGAGCAAGGACAACAACTTACTCAGAACATGTTAGAAATGGGTG  591

seq1  GAACAGAGCCTCTGGGTTCAGTTGAATTTAAGAAAATTTTCATTATTCCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAGCCTCTGGGTTCAGTTGAATTTAAGAAAATTTTCATTATTCCA  641

seq1  TATTCATGAAGTTCATTGACATACTCAGCAGATGGTAGGGCACAGGTCAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATGAAGTTCATTGACATACTCAGCAGATGGTAGGGCACAGGTCAT  691

seq1  TAAATAGCATAGAAGAAAGATACTGTAGAACGTGTGCATGCCAACTTCTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGCATAGAAGAAAGATACTGTAGAACGTGTGCATGCCAACTTCTG  741

seq1  TTTCAAATGTTATCATTTTAAACAATTAATTTTCTGTTTTTTTATTATAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATGTTATCATTTTAAACAATTAATTTTCTGTTTTTTTATTATAT  791

seq1  ATATATATATATTCCATTTTGATCATGCTTCCCACCCCCCTAACTTCTTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATTCCATTTTGATCATGCTTCCCACCCCCCTAACTTCTTT  841

seq1  CTGCCAGCTCTTCACTGAGAAGGCCAGGCTGATTCTATGAAAGACTTCAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGCTCTTCACTGAGAAGGCCAGGCTGATTCTATGAAAGACTTCAA  891

seq1  ATTGGCAGTTAAGGAGACTAGGCATAAAAACTGGGCAAGTCTAGCAAGCC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCAGTTAAGGAGACTAGGCATAAAAACTGGGCAAGTCTAGCAAGCC  941

seq1  CAGGCAAGTCAATTACTAATAGAAAAATCCCAGGCTCCAGCCTTCATGCC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAGTCAATTACTAATAGAAAAATCCCAGGCTCCAGCCTTCATGCC  991

seq1  CAGGTTGGAATGTCCCTAAAGCAAGGACAATGGGACAGCAGCAATTTCCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGGAATGTCCCTAAAGCAAGGACAATGGGACAGCAGCAATTTCCA  1041

seq1  GACTTTCTCAGCTACTTCTTCAGTAACAGTTCCCAGATCTCCCCAGCAAG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCTCAGCTACTTCTTCAGTAACAGTTCCCAGATCTCCCCAGCAAG  1091

seq1  TTTCCAGCCCCAGCACCCTGGTAATAGAATGTCCATAGACATGGACCCAA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGCCCCAGCACCCTGGTAATAGAATGTCCATAGACATGGACCCAA  1141

seq1  CAGATTAACATAGAGATGACCTACCCTGGAATTC  1176
      ||||||||||||||||||||||||||||||||||
seq2  CAGATTAACATAGAGATGACCTACCCTGGAATTC  1175

seq1: chr9_92766730_92767823
seq2: B6Ng01-311D11.g_66_1154

seq1  GAATTCTCCTTTGACTTCAACAGCTAAACTTAATGTTCTGCAATGTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTTGACTTCAACAGCTAAACTTAATGTTCTGCAATGTCATT  50

seq1  CAGGGAACAGAGCTTGCTGTCTTATTTTTATCCAGTAGAAGGGAGAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAACAGAGCTTGCTGTCTTATTTTTATCCAGTAGAAGGGAGAGCTT  100

seq1  GGCTGTGCTTAGAGGATGGTAAAGTATCAGGAACAGGTGGGAGTTGGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGCTTAGAGGATGGTAAAGTATCAGGAACAGGTGGGAGTTGGAGC  150

seq1  CTGACTGTAAAGTGACATCATAAAGTTAGTCGTATACTCTTCCAACACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGTAAAGTGACATCATAAAGTTAGTCGTATACTCTTCCAACACAG  200

seq1  AAGAGAAGCACTGTGATCTATTTTTTTAATTATATGAATATAGCAGATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGCACTGTGATCTATTTTTTTAATTATATGAATATAGCAGATGC  250

seq1  AGCAAAGTGGGAAATGTGCATAGTTAACTTCCCAGGAAAATGAGAGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGTGGGAAATGTGCATAGTTAACTTCCCAGGAAAATGAGAGTTCT  300

seq1  AGCACATTCCCTATGCTCAGAGCTATTTTCTCAAGGAGAATCGTGTGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATTCCCTATGCTCAGAGCTATTTTCTCAAGGAGAATCGTGTGCTC  350

seq1  TCTCGCCTTGTAGTGGGTGAACATTTCTCTCCTGTAACTTCTTTCTCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCCTTGTAGTGGGTGAACATTTCTCTCCTGTAACTTCTTTCTCTGG  400

seq1  AACAGAGAACGGTAGATAATACACATAATTTATTTACTTAATTTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGAACGGTAGATAATACACATAATTTATTTACTTAATTTTTTTTT  450

seq1  GATGTCTCTGCATTTGCATCTCCCTGGGTGCAGGGTTCAAATGGGTGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTCTGCATTTGCATCTCCCTGGGTGCAGGGTTCAAATGGGTGCAA  500

seq1  GTGCGAGGCCAAGGGACAACTGCTGAAGTTGTACATCAGCAGTTATGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGAGGCCAAGGGACAACTGCTGAAGTTGTACATCAGCAGTTATGAAC  550

seq1  CTTGTTCTGTGAAACACAGTCTGGCCCTGAACCTGAAGCTTGCCCATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCTGTGAAACACAGTCTGGCCCTGAACCTGAAGCTTGCCCATTTT  600

seq1  GCTAGACTGGCTGACAAGGAAGGGATGGAGATCTGTCTCTCCGATGTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGACTGGCTGACAAGGAAGGGATGGAGATCTGTCTCTCCGATGTTGG  650

seq1  GTTACAAGTGTGTGTTACTGGATCCCTGTTTGGTGCTTGTTTGCTTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAAGTGTGTGTTACTGGATCCCTGTTTGGTGCTTGTTTGCTTTTTC  700

seq1  TTCTCTTCTAGATTTAAGGATCAAACTCAGGTCCTGTGCTTACATGGAAA  750
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTCTCTTCTAGATTTAAGGATCAAACTCACGTCCTGTGCTTACATGGAAA  750

seq1  GTGCATACTTTAATGACTAAGCCGTCCCTTTGGACCTTTCAGTTATTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATACTTTAATGACTAAGCCGTCCCTTTGGACCTTTCAGTTATTTGC  800

seq1  ATAACATTAAGGCAAATTTAAGTTGTCATTTCTTAAACAAAAAGGGATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTAAGGCAAATTTAAGTTGTCATTTCTTAAACAAAAAGGGATGT  850

seq1  CTTTATACCAACCCTGTAGAAAATTCTACTAGGAAATTTTGTATTGAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATACCAACCCTGTAGAAAATTCTACTAGGAAATTTTGTATTGAAAA  900

seq1  CAATAGTTCTAAATGTTTACTAAGTGTGA-TATTAAGTT-GGCCATGAAA  948
      |||||||||| |||||||||||||||||| ||| ||||| ||||||||||
seq2  CAATAGTTCT-AATGTTTACTAAGTGTGATTATAAAGTTGGGCCATGAAA  949

seq1  TCATACGGCTGTTTAACATAGAGTTTACCAAGTGG--TTAAATATTCAAG  996
      ||||||||||||||||||||||| |||||||||||  ||||||| |||||
seq2  TCATACGGCTGTTTAACATAGAG-TTACCAAGTGGGTTTAAATA-TCAAG  997

seq1  TTTATAATGATCTCCATTTCTGTCCACATCATTATATGATTTCTATGTAA  1046
       |||||||||||||||||||||||   ||||| ||||||||||||||| |
seq2  -TTATAATGATCTCCATTTCTGTCACAATCATAATATGATTTCTATGT-A  1045

seq1  TACAACTTATTATAG-ATACTTTATTTTTCCCTTAAAAGTGATCATCAT  1094
      |||||||   ||||| ||||||||||||   | ||||||||||||||||
seq2  TACAACT--ATATAGAATACTTTATTTT---CCTAAAAGTGATCATCAT  1089