BAC Information

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BAC

Clone NameB6Ng01-312B18
Chromosome9 (Build37)
Map Location 85,186,829 - 85,354,115
singlet/doubletdoublet
Overlap geneBC023892
Upstream geneEG666669, LOC666672
Downstream geneIbtk, 4933431K14Rik, EG434426, 9330154J02Rik, Tpbg, 2610018I03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312B18.bB6Ng01-312B18.g
ACCGA103658GA103659
length1,0671,180
definitionB6Ng01-312B18.b B6Ng01-312B18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,353,041 - 85,354,115)(85,186,829 - 85,188,005)
sequence
gaattcaattattatctagaaaacaacctgatcatcaaaccatggatctt
aatactttgttacacattttctcaaaatatgaaaagtgaacctatctcaa
gaaaaataatgaaaatagctattaccagtgtcaaaatgcacatttaaaga
aaaggtcatgaagtttgaaaacttgcacctgccaccatgagctcaaaagg
tctctagatcttacttaagaccttatagtgatgatggagcctcagacctt
tatgaaccttttggatattgtaagggaacaagtataaatgacaaatatat
atagtcttattataattacttatcagcaaaagattcacttaaaacatgtg
atagaccagtggaatttaagataaaagcacacaagttttactaaaggtaa
ctcaaagtcctcattgtaactaatcctatagaggggaccacttgctgggt
tctggtaaaatggtagaacctcactcataataccttgagaaaagcttcca
tctacatcaagtagaaaccatgacacatctcagaaagatggatgagttgt
ggattagagaatccaaccttgcttattaatccagacgctctagggatctg
taaatatgtcaaataatgcttgactcctaatttgtgcttttgttttattt
tcttaaagcaagtacaaatgtgcctaagttctggttcaataaacttcaac
agatagtgcaaatggcctttggccttttgtgtttggatcatttgaaagag
aataaagagttccagcccctagttgtttgcaaactgcagtcagaatggcc
aagcagagttgtttccttcccagagccagctgagtagaaggcacaagttc
ctgtaagaggacaatggaatgctgagcataacaagggcatgctggggcag
atcagggccagccagcaagtgtggtagattgtctaggtcttattccagtt
gggtaaggacactttctcaagtgactttcagcaacaggcttgtctctctc
aaaagacatttgttttttatcaattaacagcctgaaaccaactgtgtgtt
tagtctcagaaggcagc
gaattcaagatttcgcatgcctttaatcccagcacttgggaggcagaggc
aggcgaatttctgagttccaggacagcctggtctacagagtgagttccag
gacagccagggctacacagagaaaccctgtctcgaaaaaaaaaaaacaaa
aaacaaaaaacaaaaaacaaaaaacaaaaaacaaaaaacaaaaaacaaaa
aacaaaaaaaaaacaaaaacaaaaaccaaaaaccaaaaaccaaaaaacaa
aaatttgttcatctccaaaccagtgggagtgtctctctttggaagtttct
accctgtgcatattcaaactgtctatagaatgaggctttttgaactccat
cttatggacaggattcttatatcacagggttcttgaaaatactttaatct
gtaggcacactaaatttaccaagactatagatggcaagctatataggatt
gtgatttttctgaataatgaaattgttcatttaaacaaaacacacatatc
actctggtattctgtgtaagtctaaacaataattgtttgaaagtgaatag
ttgggggtatttagcaatcacatataattatggatgattatgcttataga
tgacaaaactgtgcggacaaatgactaagaaccagaagcttgtgtttcca
caggtgagtcaaaccatcagtttatgaggattttacttctaagaaaattt
actaaggcttttactagggattttacttccacgtaaatggcattttgaag
tatactacagaggaagttaacatgagtcagtccctcatgaactcttaaat
cttgaaggaaccatttgatttctctagacatagttttctctacctggaaa
aagagagcaatacctaattcataggattattatagaaattaaatgatgct
aaagtggatagtttttgtcgaacggccattcattaaatattctttctaac
tcttttctgtgttctgtccctttctaaagagcaaaactgaaaaacaaaaa
actactctactttggcttagatatgaagaaggatacgcacttttaaatat
ataactcaataaggatctggccttttcctccactgactgagctatggaaa
cggaggctgaagaaaatgtgatcctagtcaagtgtttgcaaggttcaagt
acccgaaaagttacacttcagcccgtgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_85353041_85354115
seq2: B6Ng01-312B18.b_46_1112 (reverse)

seq1  GCTGCCTTCTGAGACTAAACACACAGTGTGTTTTTCCAGGCTGTAATTTG  50
      |||||||||||||||||||||||||||  ||||   |||||||| | |||
seq2  GCTGCCTTCTGAGACTAAACACACAGTTGGTTT---CAGGCTGTTAATTG  47

seq1  ATAAAAAACAAAATGTCTTTTGAGAGAGGACAAGCCTGTTGCTTGAAAAG  100
      ||||||||| ||||||||||||||||| |||||||||||||||   ||||
seq2  ATAAAAAAC-AAATGTCTTTTGAGAGA-GACAAGCCTGTTGCT--GAAAG  93

seq1  TCACTTGAAGAAAAGTGTCCTTACCCAACTGGAATAAGACCTAGACAATC  150
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGA--GAAAGTGTCCTTACCCAACTGGAATAAGACCTAGACAATC  141

seq1  TACCACACTTGCTGGCTGGCCCTGATCTGCCCCAGCATG-CCTTGTTATG  199
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TACCACACTTGCTGGCTGGCCCTGATCTGCCCCAGCATGCCCTTGTTATG  191

seq1  CTCAGCATTCCATTGTCCTCTTACAGGAACTTGTGCCTTCTACTCAGCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATTCCATTGTCCTCTTACAGGAACTTGTGCCTTCTACTCAGCTG  241

seq1  GCTCTGGGAAGGAAACAACTCTGCTTGGCCATTCTGACTGCAGTTTGCAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGGAAGGAAACAACTCTGCTTGGCCATTCTGACTGCAGTTTGCAA  291

seq1  ACAACTAGGGGCTGGAACTCTTTATTCTCTTTCAAATGATCCAAACACAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTAGGGGCTGGAACTCTTTATTCTCTTTCAAATGATCCAAACACAA  341

seq1  AAGGCCAAAGGCCATTTGCACTATCTGTTGAAGTTTATTGAACCAGAACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAAAGGCCATTTGCACTATCTGTTGAAGTTTATTGAACCAGAACT  391

seq1  TAGGCACATTTGTACTTGCTTTAAGAAAATAAAACAAAAGCACAAATTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCACATTTGTACTTGCTTTAAGAAAATAAAACAAAAGCACAAATTAG  441

seq1  GAGTCAAGCATTATTTGACATATTTACAGATCCCTAGAGCGTCTGGATTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAGCATTATTTGACATATTTACAGATCCCTAGAGCGTCTGGATTA  491

seq1  ATAAGCAAGGTTGGATTCTCTAATCCACAACTCATCCATCTTTCTGAGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAAGGTTGGATTCTCTAATCCACAACTCATCCATCTTTCTGAGAT  541

seq1  GTGTCATGGTTTCTACTTGATGTAGATGGAAGCTTTTCTCAAGGTATTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATGGTTTCTACTTGATGTAGATGGAAGCTTTTCTCAAGGTATTAT  591

seq1  GAGTGAGGTTCTACCATTTTACCAGAACCCAGCAAGTGGTCCCCTCTATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGGTTCTACCATTTTACCAGAACCCAGCAAGTGGTCCCCTCTATA  641

seq1  GGATTAGTTACAATGAGGACTTTGAGTTACCTTTAGTAAAACTTGTGTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAGTTACAATGAGGACTTTGAGTTACCTTTAGTAAAACTTGTGTGC  691

seq1  TTTTATCTTAAATTCCACTGGTCTATCACATGTTTTAAGTGAATCTTTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTTAAATTCCACTGGTCTATCACATGTTTTAAGTGAATCTTTTG  741

seq1  CTGATAAGTAATTATAATAAGACTATATATATTTGTCATTTATACTTGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAGTAATTATAATAAGACTATATATATTTGTCATTTATACTTGTT  791

seq1  CCCTTACAATATCCAAAAGGTTCATAAAGGTCTGAGGCTCCATCATCACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACAATATCCAAAAGGTTCATAAAGGTCTGAGGCTCCATCATCACT  841

seq1  ATAAGGTCTTAAGTAAGATCTAGAGACCTTTTGAGCTCATGGTGGCAGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGTCTTAAGTAAGATCTAGAGACCTTTTGAGCTCATGGTGGCAGGT  891

seq1  GCAAGTTTTCAAACTTCATGACCTTTTCTTTAAATGTGCATTTTGACACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTTTCAAACTTCATGACCTTTTCTTTAAATGTGCATTTTGACACT  941

seq1  GGTAATAGCTATTTTCATTATTTTTCTTGAGATAGGTTCACTTTTCATAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATAGCTATTTTCATTATTTTTCTTGAGATAGGTTCACTTTTCATAT  991

seq1  TTTGAGAAAATGTGTAACAAAGTATTAAGATCCATGGTTTGATGATCAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAAAATGTGTAACAAAGTATTAAGATCCATGGTTTGATGATCAGG  1041

seq1  TTGTTTTCTAGATAATAATTGAATTC  1075
      ||||||||||||||||||||||||||
seq2  TTGTTTTCTAGATAATAATTGAATTC  1067

seq1: chr9_85186829_85188005
seq2: B6Ng01-312B18.g_67_1246

seq1  GAATTCAAGATTTCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATTTCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGC  50

seq1  AGGCGAATTTCTGAGTTCCAGGACAGCCTGGTCTACAGAGTGAGTTCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGAATTTCTGAGTTCCAGGACAGCCTGGTCTACAGAGTGAGTTCCAG  100

seq1  GACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAAAAAAAACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAAAAAAAACAAA  150

seq1  AAACAAAAAACAAAAAACAAAAAACAAAAAACAAAAAACAAAAAACAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAACAAAAAACAAAAAACAAAAAACAAAAAACAAAAAACAAAA  200

seq1  AACAAAAAAAAAACAAAAACAAAAACCAAAAACCAAAAACCAAAAAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAAAAAACAAAAACAAAAACCAAAAACCAAAAACCAAAAAACAA  250

seq1  AAATTTGTTCATCTCCAAACCAGTGGGAGTGTCTCTCTTTGGAAGTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGTTCATCTCCAAACCAGTGGGAGTGTCTCTCTTTGGAAGTTTCT  300

seq1  ACCCTGTGCATATTCAAACTGTCTATAGAATGAGGCTTTTTGAACTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTGCATATTCAAACTGTCTATAGAATGAGGCTTTTTGAACTCCAT  350

seq1  CTTATGGACAGGATTCTTATATCACAGGGTTCTTGAAAATACTTTAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGACAGGATTCTTATATCACAGGGTTCTTGAAAATACTTTAATCT  400

seq1  GTAGGCACACTAAATTTACCAAGACTATAGATGGCAAGCTATATAGGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCACACTAAATTTACCAAGACTATAGATGGCAAGCTATATAGGATT  450

seq1  GTGATTTTTCTGAATAATGAAATTGTTCATTTAAACAAAACACACATATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTTTCTGAATAATGAAATTGTTCATTTAAACAAAACACACATATC  500

seq1  ACTCTGGTATTCTGTGTAAGTCTAAACAATAATTGTTTGAAAGTGAATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGTATTCTGTGTAAGTCTAAACAATAATTGTTTGAAAGTGAATAG  550

seq1  TTGGGGGTATTTAGCAATCACATATAATTATGGATGATTATGCTTATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGTATTTAGCAATCACATATAATTATGGATGATTATGCTTATAGA  600

seq1  TGACAAAACTGTGCGGACAAATGACTAAGAACCAGAAGCTTGTGTTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAACTGTGCGGACAAATGACTAAGAACCAGAAGCTTGTGTTTCCA  650

seq1  CAGGTGAGTCAAACCATCAGTTTATGAGGATTTTACTTCTAAGAAAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGAGTCAAACCATCAGTTTATGAGGATTTTACTTCTAAGAAAATTT  700

seq1  ACTAAGGCTTTTACTAGGGATTTTACTTCCACGTAAATGGCATTTTGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGCTTTTACTAGGGATTTTACTTCCACGTAAATGGCATTTTGAAG  750

seq1  TATACTACAGAGGAAGTTAACATGAGTCAGTCCCTCATGAACTCTTAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTACAGAGGAAGTTAACATGAGTCAGTCCCTCATGAACTCTTAAAT  800

seq1  CTTGAAGGAACCATTTGATTTCTCTAGACATAGTTTTCTCTACCTGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGGAACCATTTGATTTCTCTAGACATAGTTTTCTCTACCTGGAAA  850

seq1  AAGAGAGCAATACCTAATTCATAGGATTATTATAGAAATTAAATGATGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGCAATACCTAATTCATAGGATTATTATAGAAATTAAATGATGCT  900

seq1  AAAGTGGATAG-TTTTGTCGAACGGCCATTCATTAAATATTCTTTCTAAC  949
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGATAGTTTTTGTCGAACGGCCATTCATTAAATATTCTTTCTAAC  950

seq1  TCTTTTCTGTGTTCTGTCCTTTTCTAAAGAGCAAAACTGAAAA--CAAAA  997
      ||||||||||||||||||| |||||||||||||||||||||||   ||||
seq2  TCTTTTCTGTGTTCTGTCCCTTTCTAAAGAGCAAAACTGAAAAACAAAAA  1000

seq1  ACTACCTCTACTTTGGCTTAGATATGAAGAGGATTACGGCACTTTTTAAA  1047
      |||| ||||||||||||||||||||||||| |  ||| |||| |||||||
seq2  ACTA-CTCTACTTTGGCTTAGATATGAAGAAGGATAC-GCAC-TTTTAAA  1047

seq1  TATATAACTC-ATAA-GATCTTGGGCCTTTT-CTCACTTGACTGAGGTAT  1094
      |||||||||| |||| |||||  |||||||| |||   |||||||| |||
seq2  TATATAACTCAATAAGGATCT--GGCCTTTTCCTCCACTGACTGAGCTAT  1095

seq1  GGAAACCGAGGCTGAAGAAAAATGTGAATCCTTATGTAAGTG-TTGCAGG  1143
      |||||| |||||||||| |||||||| |||| ||   ||||| ||||| |
seq2  GGAAACGGAGGCTGAAG-AAAATGTG-ATCC-TAGTCAAGTGTTTGCAAG  1142

seq1  GTTCAAGTACCAGAAA--GTACACTTAAGCC--TGTCA  1177
      ||||||||||| ||||   ||||||| ||||  |||||
seq2  GTTCAAGTACCCGAAAAGTTACACTTCAGCCCGTGTCA  1180