BAC Information

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BAC

Clone NameB6Ng01-312H23
Chromosome9 (Build37)
Map Location 29,515,252 - 29,653,609
singlet/doubletdoublet
Overlap geneHnt
Upstream geneOpcml, LOC625222
Downstream geneSnx19, LOC666478
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312H23.bB6Ng01-312H23.g
ACCGA103951GA103952
length920686
definitionB6Ng01-312H23.b B6Ng01-312H23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,652,688 - 29,653,609)(29,515,252 - 29,515,957)
sequence
gaattcagctcaatgggagaacaacagcttggattaagaccctaagttcc
atgcccaacatcataaaatatgccacagaaaagccaacaacaacaaactt
gaaaggctgtcatggtagaatactctagttatcccaacacttaggaggct
aaggctgtgtcatgagtttgaagatagtttgggctatgtagtcagaccct
gtctcaacaaacaccctagtctaggatgctcttgatctagaaaccctggc
ataaaaggtaagggaaaggacgggagatttaatgaaattccaagagaaag
tatgaagaaatggtaagaaaaccttctgtattgagtaccacattaggcat
tttgtggagaatattgtcagatgcctgtgtaggtgggaaaactccaggca
actgggagcattggggtcagtaggataatgcaacaattacattgcctcca
tcctccagagaaggaaaagacttctgagcccaagcctgtgtccatgtata
ggatgcgctagagtgcggcaggggcatcaattcccaaagcaatgaggatt
tgtgctgtggctaagagttagttgtcaattcgggggtagagttttatcca
gtattccttccagacatggcttaatagcagagaagatgagtttattcacc
catcatcccacaggtaaacctggcacttactaaatctgaacttgtctctc
tgtcatgtgccaatgtggaagtggatatgtttctgatccccctgtctctg
tgcttataggattaaataattcctctagggcatgactatgagggatggaa
ggagaatatctctcttgccctttgtttctctgtctctctgtctctctgtc
tctgtctctgtatctctctctgtctctctgtctctctctctctctgttct
ctctctctctctctcttctc

gaattccaggatagccaaggctacatagaaatacctggtcttgcaaaaca
gaaagaaaccttttaaagcaaggaaggaaggaaggaaagaaggaaggaag
gaaggaaggaaggaaggaaggaaggaaggaagaaagaaaaaaagaaagaa
agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag
gaaggaaggaaggaaggaaggaaggaaggaaggaaggaagaaaggaagga
agaaaggtaggtcatatattgattaggatgtatataaaaaaatatacata
gcagtggtgtatcctagataaaagatgggacctaggcaaatgtcctggaa
aggggattgaataatgtggagcatatctgcacagtaaaaaaaatacacaa
tagaatggtcgccacaagtgcaggcacaataggatactctccatcattct
attcacatgtgagctgaaaagccaaacacttacccaacatgttaggcatc
atccttgaagtcagctggtggcagaggacagacagggctgtaggagatct
tggccaacctgttactaagttgttgcctaatctgtgtatgctattaggag
ctcagttgtgctggtcactgaatagcattctgtgtacttgtccatagttg
ttcagaatagctccaattgaagagaggagaggtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_29652688_29653609
seq2: B6Ng01-312H23.b_48_967 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGACAGAGAGA  50
      |||| ||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAGA-AGAGAGAGAGAGAGAGAGA-ACAGAGAGAGAGAGAGACAGAGAGA  48

seq1  CAGAGAGAGATACAGAGACAGAGACAGAGAGACAGAGAGACAGAGAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAGATACAGAGACAGAGACAGAGAGACAGAGAGACAGAGAAACA  98

seq1  AAGGGCAAGAGAGATATTCTCCTTCCATCCCTCATAGTCATGCCCTAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAAGAGAGATATTCTCCTTCCATCCCTCATAGTCATGCCCTAGAG  148

seq1  GAATTATTTAATCCTATAAGCACAGAGACAGGGGGATCAGAAACATATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATTTAATCCTATAAGCACAGAGACAGGGGGATCAGAAACATATCC  198

seq1  ACTTCCACATTGGCACATGACAGAGAGACAAGTTCAGATTTAGTAAGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACATTGGCACATGACAGAGAGACAAGTTCAGATTTAGTAAGTGC  248

seq1  CAGGTTTACCTGTGGGATGATGGGTGAATAAACTCATCTTCTCTGCTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTACCTGTGGGATGATGGGTGAATAAACTCATCTTCTCTGCTATT  298

seq1  AAGCCATGTCTGGAAGGAATACTGGATAAAACTCTACCCCCGAATTGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGTCTGGAAGGAATACTGGATAAAACTCTACCCCCGAATTGACA  348

seq1  ACTAACTCTTAGCCACAGCACAAATCCTCATTGCTTTGGGAATTGATGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTCTTAGCCACAGCACAAATCCTCATTGCTTTGGGAATTGATGCC  398

seq1  CCTGCCGCACTCTAGCGCATCCTATACATGGACACAGGCTTGGGCTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCGCACTCTAGCGCATCCTATACATGGACACAGGCTTGGGCTCAGA  448

seq1  AGTCTTTTCCTTCTCTGGAGGATGGAGGCAATGTAATTGTTGCATTATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTTCCTTCTCTGGAGGATGGAGGCAATGTAATTGTTGCATTATCC  498

seq1  TACTGACCCCAATGCTCCCAGTTGCCTGGAGTTTTCCCACCTACACAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACCCCAATGCTCCCAGTTGCCTGGAGTTTTCCCACCTACACAGGC  548

seq1  ATCTGACAATATTCTCCACAAAATGCCTAATGTGGTACTCAATACAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACAATATTCTCCACAAAATGCCTAATGTGGTACTCAATACAGAAG  598

seq1  GTTTTCTTACCATTTCTTCATACTTTCTCTTGGAATTTCATTAAATCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTACCATTTCTTCATACTTTCTCTTGGAATTTCATTAAATCTCC  648

seq1  CGTCCTTTCCCTTACCTTTTATGCCAGGGTTTCTAGATCAAGAGCATCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTTTCCCTTACCTTTTATGCCAGGGTTTCTAGATCAAGAGCATCCT  698

seq1  AGACTAGGGTGTTTGTTGAGACAGGGTCTGACTACATAGCCCAAACTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGGGTGTTTGTTGAGACAGGGTCTGACTACATAGCCCAAACTATC  748

seq1  TTCAAACTCATGACACAGCCTTAGCCTCCTAAGTGTTGGGATAACTAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTCATGACACAGCCTTAGCCTCCTAAGTGTTGGGATAACTAGAG  798

seq1  TATTCTACCATGACAGCCTTTCAAGTTTGTTGTTGTTGGCTTTTCTGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTACCATGACAGCCTTTCAAGTTTGTTGTTGTTGGCTTTTCTGTGG  848

seq1  CATATTTTATGATGTTGGGCATGGAACTTAGGGTCTTAATCCAAGCTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTATGATGTTGGGCATGGAACTTAGGGTCTTAATCCAAGCTGTT  898

seq1  GTTCTCCCATTGAGCTGAATTC  922
      ||||||||||||||||||||||
seq2  GTTCTCCCATTGAGCTGAATTC  920


seq1: chr9_29515252_29515957
seq2: B6Ng01-312H23.g_66_751

seq1  GAATTCCAGGATAGCCAAGGCTACATAGAAATACCTGGTCTTGCAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGATAGCCAAGGCTACATAGAAATACCTGGTCTTGCAAAACA  50

seq1  GAAAGAAAGC-AAGAAAGCAAGGAAGGAAGGAAGGAAAGAAGGAAGGAAG  99
      |||||||| |    ||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAACCTTTTAAAGCAAGGAAGGAAGGAAGGAAAGAAGGAAGGAAG  100

seq1  GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAAAAAGAAAGAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAAAAAGAAAGAA  150

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  200

seq1  GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGGAAGGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGGAAGGA  250

seq1  AGAAAGGTAGGTCATATATTGATTAGGATGTATATAAAAAAATATACATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTAGGTCATATATTGATTAGGATGTATATAAAAAAATATACATA  300

seq1  GCAGTGGTGTATCCTAGATAAAAGATGGGACCTAGGCAAATGTCCTGGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGTGTATCCTAGATAAAAGATGGGACCTAGGCAAATGTCCTGGAA  350

seq1  AGGGGATTGAATAATGTGGAGCATATCTGCACAGTAAAAAAAATACACAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATTGAATAATGTGGAGCATATCTGCACAGTAAAAAAAATACACAA  400

seq1  TAGAATGGTCGCCACAAGTGCAGGCACAATAGGATACTCTCCATCATTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGGTCGCCACAAGTGCAGGCACAATAGGATACTCTCCATCATTCT  450

seq1  ATTCACATGTGAGCTGAAAAGCCAAACACTTACCCAACATGTTAGGCATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACATGTGAGCTGAAAAGCCAAACACTTACCCAACATGTTAGGCATC  500

seq1  ATCCTTGAAGTCAGCTGGTGGCAGAGGACAGACAGGGCTGTAGGAGATCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGAAGTCAGCTGGTGGCAGAGGACAGACAGGGCTGTAGGAGATCT  550

seq1  TGGCCAACCTGGTTTACTAAGTTGTTGCCTAATCTGTGTATGCTATTTAA  599
      |||||||||||  ||||||||||||||||||||||||||||||||||   
seq2  TGGCCAACCTG--TTACTAAGTTGTTGCCTAATCTGTGTATGCTATT---  595

seq1  GGGAGCTCAGTTTGTGGCTGGTCACTGAAATAGCATTCTGTGTACTTGTC  649
       ||||||||| |||| ||||||||||| ||||||||||||||||||||||
seq2  AGGAGCTCAG-TTGT-GCTGGTCACTG-AATAGCATTCTGTGTACTTGTC  642

seq1  CATAAGTTGTTTTCAAGGAAATAGCTCCAAATTGAAAAGGAGGAGGGAGA  699
      ||| |||||  ||||    ||||||||| ||||||| | ||||||     
seq2  CAT-AGTTG--TTCA---GAATAGCTCC-AATTGAAGA-GAGGAG-----  679

seq1  GGGTGAG  706
       ||||||
seq2  AGGTGAG  686


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