BAC Information

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BAC

Clone NameB6Ng01-313E19
Chromosome9 (Build37)16 (Build37)
Map Location 12,030,247 - 12,030,44260,307,401 - 60,308,527
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039989
Downstream geneLOC622505, LOC100039680, LOC665285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313E19.bB6Ng01-313E19.g
ACCGA104552GA104553
length9851,121
definitionB6Ng01-313E19.b B6Ng01-313E19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,030,247 - 12,030,442)(60,307,401 - 60,308,527)
sequence
gaattctctaatggtaactaaattaaaatgaagattattgacagaagcta
tatacattcgagaaggaaataattatgaaatcactaatatgtttgccgat
aaatattgttgacattttcatagagaaatacaaaataaaagtaaaaatat
ttatcaaagacactatggaggacactatcatcaactgatgaaagcttaca
aggtatatttctttattaggtatttatttcatttacatttccaatgctat
cccaaaagtccctcacctgctcccccacccacccacttccacttcttgga
cctggcgttcccctatactgaggcagataaagtttacacgaccaatgggc
ctctctttccactgatggctgactaggccatcttctgattcatatgcagc
tagagacacgagctctgggaggggggtactggttagttcttattgttgtt
ccacctatagggttgcaaatccctttagctccttggttactttctctagt
tcctccattgggagccctgtgacccatccaatagctgactgtgagcatcc
acttctgtgtttgctagccccctgcatagcctcacaagagacagctatat
cagggtcctttcagcaaactcttgctagtgtatacaatggtgtcagcgtt
tggaggctgattatgggatggatccctggatatggcagtctctagatggt
ccatccatttgtctcagctccaaactttgtctctgtaactccttccatgg
gtgttttgttcccaattctaagaaggggcaaagtgtccacactttggtct
tcgttcttcttgagttttatgtgtttagcaaattgtatcttatatcttgg
gtattcttttttaaatgtctacctttgctttactttctctatttttaatt
aatcattccattagtttaaatctcaaatgatatccctctttctggttatt
ccatcaaccaattccccatctcatgatataccact

gaattcccactaacaatcctttcctgccactccctgtggtgtgttacacc
atggtagtttttacctagcatgcaatttacctagcattgcactgcatgat
ataggaagtgccagctagaattataaaggtttctgaaacaagaaaaggta
tcctgctatgttttgaatgaagctaaatttagtgaaagaaacataggtct
tgtatgcacagtaactgctctggtactcagaaaagtatcacagagtttta
tttgaaaacctaagactctgagctttaaaataaaatgtttaatatgtaca
acacataattttccttaaaaatgacccactgacaagtatagtgagagtcg
tatggtgacataacttaaaagaacttgggtcaataaaacaaagaataaaa
atatgaaggacaataaagacaatttttattaataacaaatcttgtaatat
atgctatatttgctctaaagagcaggtcttcctagtgtgctaaatggaag
acagttctcatggatgatgttgaaaggaaattacatctgaataagattgc
atatgtttcacaggatataacatgcagcggttaggggcttggctagaact
cagttgagcaatacttgagtcatgaactaacttctccctgtgctatctgt
tcagtaagaaagtcctggttgcagaatttaactttgcttaatggaattgt
taaaaatcttgatgtggacaactggaagaaagagccttttgtgtctataa
agaaatatttacatatgctgacctcaaattcagtgttgcggtcacaggac
atatggagttcttatccattaaaacattactatataatgcaaagcctcaa
gaaatcaaagtaaaaattatccaggcatcacaatccaaaggtagctcttc
tggcataggttattggtaaatcaagctgatatatcaaacagatgagtgtt
gagttccactagggagatagtgtttctcacaaatagcaagaaactgattt
aacgatttattctgtttgcaaatgcattcatacagtagtgttcagatcag
atggatgctgaaccgactgggtgataaaagaatacactgtgacagaatag
agaacctatgataaataattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_12030247_12030442
seq2: B6Ng01-313E19.b_265_464

seq1  GGTATTTATTTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCCACAC  50
      |||||||||||||||||||||||||||||||||||||||||||| |||  
seq2  GGTATTTATTTCATTTACATTTCCAATGCTATCCCAAAAGTCCCTCACCT  50

seq1  ACTCC----CCCACCCACTACCACTTTTTGGCCCTGGCGTTCCCCTGTAC  96
       ||||    |||||||||| |||||| |||| |||||||||||||| |||
seq2  GCTCCCCCACCCACCCACTTCCACTTCTTGGACCTGGCGTTCCCCTATAC  100

seq1  TGAGGCAGATAAAGTTTGCATGACCAATGGGCCTCTCTTTTCACTGATGG  146
      ||||||||||||||||| || ||||||||||||||||||| |||||||||
seq2  TGAGGCAGATAAAGTTTACACGACCAATGGGCCTCTCTTTCCACTGATGG  150

seq1  CTGACTAGGTCATCTTCTGATACATATGCAGCTAGAGACACGAGCTCTGG  196
      ||||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  CTGACTAGGCCATCTTCTGATTCATATGCAGCTAGAGACACGAGCTCTGG  200


seq1: chr16_60307401_60308527
seq2: B6Ng01-313E19.g_66_1186

seq1  GAATTCCCACTAACAATCCTTTCCTGCCACTCCCTGTGGTGTGTTACACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACTAACAATCCTTTCCTGCCACTCCCTGTGGTGTGTTACACC  50

seq1  ATGGTAGTTTTTACCTAGCATGCAATTTACCTAGCATTGCACTGCATGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGTTTTTACCTAGCATGCAATTTACCTAGCATTGCACTGCATGAT  100

seq1  ATAGGAAGTGCCAGCTAGAATTATAAAGGTTTCTGAAACAAGAAAAGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGTGCCAGCTAGAATTATAAAGGTTTCTGAAACAAGAAAAGGTA  150

seq1  TCCTGCTATGTTTTGAATGAAGCTAAATTTAGTGAAAGAAACATAGGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTATGTTTTGAATGAAGCTAAATTTAGTGAAAGAAACATAGGTCT  200

seq1  TGTATGCACAGTAACTGCTCTGGTACTCAGAAAAGTATCACAGAGTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCACAGTAACTGCTCTGGTACTCAGAAAAGTATCACAGAGTTTTA  250

seq1  TTTGAAAACCTAAGACTCTGAGCTTTAAAATAAAATGTTTAATATGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAACCTAAGACTCTGAGCTTTAAAATAAAATGTTTAATATGTACA  300

seq1  ACACATAATTTTCCTTAAAAATGACCCACTGACAAGTATAGTGAGAGTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAATTTTCCTTAAAAATGACCCACTGACAAGTATAGTGAGAGTCG  350

seq1  TATGGTGACATAACTTAAAAGAACTTGGGTCAATAAAACAAAGAATAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGACATAACTTAAAAGAACTTGGGTCAATAAAACAAAGAATAAAA  400

seq1  ATATGAAGGACAATAAAGACAATTTTTATTAATAACAAATCTTGTAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAGGACAATAAAGACAATTTTTATTAATAACAAATCTTGTAATAT  450

seq1  ATGCTATATTTGCTCTAAAGAGCAGGTCTTCCTAGTGTGCTAAATGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATATTTGCTCTAAAGAGCAGGTCTTCCTAGTGTGCTAAATGGAAG  500

seq1  ACAGTTCTCATGGATGATGTTGAAAGGAAATTACATCTGAATAAGATTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCTCATGGATGATGTTGAAAGGAAATTACATCTGAATAAGATTGC  550

seq1  ATATGTTTCACAGGATATAACATGCAGCGGTTAGGGGCTTGGCTAGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTCACAGGATATAACATGCAGCGGTTAGGGGCTTGGCTAGAACT  600

seq1  CAGTTGAGCAATACTTGAGTCATGAACTAACTTCTCCCTGTGCTATCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAGCAATACTTGAGTCATGAACTAACTTCTCCCTGTGCTATCTGT  650

seq1  TCAGTAAGAAAGTCCTGGTTGCAGAATTTAACTTTGCTTAATGGAATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAGAAAGTCCTGGTTGCAGAATTTAACTTTGCTTAATGGAATTGT  700

seq1  TAAAAATCTTGATGTGGACAACTGGAAGAAAGAGCCTTTTGTGTCTATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCTTGATGTGGACAACTGGAAGAAAGAGCCTTTTGTGTCTATAA  750

seq1  AGAAATATTTACATATGCTGACCTCAAATTCAGTGTTGCGGTCACAGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATTTACATATGCTGACCTCAAATTCAGTGTTGCGGTCACAGGAC  800

seq1  ATATGGAGTTCTTATCCATTAAAACATTACTATATAATGCAAAGCCTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAGTTCTTATCCATTAAAACATTACTATATAATGCAAAGCCTCAA  850

seq1  GAAATCAAAGTAAAAATTATCCAGGCATCACAATCC-AAGGTAGCTCTTC  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAAATCAAAGTAAAAATTATCCAGGCATCACAATCCAAAGGTAGCTCTTC  900

seq1  TGGCATAGGTTATTGGTAAATCAAGCTGATATATCAAACAGATGAGGTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGCATAGGTTATTGGTAAATCAAGCTGATATATCAAACAGATGA-GTGT  949

seq1  TGAGTTCCACTAGGGAGATAGTGTTTCCTCACAAATAGCAAAGAAACTGA  999
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  TGAGTTCCACTAGGGAGATAGTGTTT-CTCACAAATAGC-AAGAAACTGA  997

seq1  TTTAAACGATTTA-TCTGTTTGCAAATGGCATTCCATACAGTAAGTG-TC  1047
      ||| ||||||||| ||||||||||||| ||||| |||||||| |||| ||
seq2  TTT-AACGATTTATTCTGTTTGCAAAT-GCATT-CATACAGT-AGTGTTC  1043

seq1  AGATCAGAAGGGAATGCTGACACGACTGGGTGATAAAAG-ATACACTGTG  1096
      |||||||| ||  |||||||  ||||||||||||||||| ||||||||||
seq2  AGATCAGATGG--ATGCTGAACCGACTGGGTGATAAAAGAATACACTGTG  1091

seq1  ACAAGATTAGAGAA-CTATGATAAATTAATTT  1127
      || ||| ||||||| |||||||||| ||||||
seq2  AC-AGAATAGAGAACCTATGATAAA-TAATTT  1121


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