BAC Information

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BAC

Clone NameB6Ng01-316B21
Chromosome9 (Build37)
Map Location 15,127,490 - 15,128,646
singlet/doubletsinglet
Overlap gene5830418K08Rik
Upstream geneSesn3, Endod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3
Downstream geneLOC100040375, LOC100039955, BC017612, Ccdc67, LOC665461, LOC330891, Slc36a4, Mtnr1b, Fat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316B21.bB6Ng01-316B21.g
ACCGA106593GA106594
length7841,146
definitionB6Ng01-316B21.b B6Ng01-316B21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctcacccaatatagggcaaagggaaggagcatcaccccgtctct
gccagtctctaaggtcaatttaattaaggtctcttttaatgttttgttta
tcttttttgcctgtcttgaactttggggtcaatatgtacaatgtaatttc
caatctgtcccaataaatcttgttacatccgggctgaccttggacacacg
tgttggtcccttgtttgattctatcacttgaggagatctgtatctgggca
agatatcctctagtaactttttaacttttgtatttgggtcttcatcggga
atgcctctgtcaatgcagagaaggtatccatgagccccagcaagtactcg
taaccagacttccctggtttgatttttgtaaaatcaacttcctagtaggc
ccctggtctctaacctcatagtggagagcctggatgtctgggagtgttac
gggtctgcagcttgacactatagcctcaatagtattctgcatgtccttga
cagtcaccttagaatgtctcactgtgttggccatccatctcactcccatg
cgagtgactttgtggatttatgaggatggtttttgccaaggaggtggata
atattagtttaccttcagccaattgccaccatccttccgaacattgactc
atgggctaattcttagcccatttgatctcttcctctgtatagacagagca
ttctggtaagctgggattggagggctcgggcagaagagtagccaacatag
aggcaactgttttttggtttggggggaggggttt
gaattctggtcgaagctgttgaaaagactgttcagatcctgcattaaaaa
aaaaaaatcacaaagtcaacactggatagagagtcacaatttaagtaaac
tgtaaataggttttatgaactacagttttagaaggaaaagttgatatgta
taaacatacaataaacccagtggtcagtaattttcacaaaaagcatgtat
tctctaatattgtctaagttccattgttattcccatgagaattttgagta
acaaaaatagaacgtgtgtgtgtgtgtgtgtgtacacatacaatgtttag
aaagatatgactacagttagtcaggtgggacaaaagggatttctgatttg
tgtgagagtactgcacacattcaagtcaaatatatattacattgcttaaa
taaaggaacagaacctctgatgcagagaaccagagaggggacagatgagg
aggtgagagggataaatgccaaagagatggagagaatcatcacttgattt
agcggtctcacttagtcacacaccctcagttgttgcatgagccaggttaa
tatcaagttggttcagccttgggttaggagaatgtgacttggctgtcagt
gctgggaagcagattgtgcctgtggataatgccttaacatgtttttcaga
tgaagattctgagctctgctgagaacagaaagaaaaaaggctgaatactg
atcttatattaccagtcaaatccaccatagtcctttgatattgtatttct
ttaattacagcctcaccattacagtcacagttgtgatgattaaagaactc
cattttcaaccaagtacccttcttagtagctactgacctaaatttctgaa
agacaaactattaacctgtactccagaatgctgtaactgctgtgagatac
tgaattccttgctctggttttataagcccactgactgataagtgggacac
tcctttactgaggagtacaggagcactcatggctgaaggagcgaagcagt
ctctcattcatctacaaatttccaccaacagatgactgtgtctccacctt
ttaatcactcgtcctcaacactcaacagcactgacttaatatacttgtta
aagttcgcctgtcttctggaatgtccagggatgataagtccaaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_15127490_15128646
seq2: B6Ng01-316B21.g_67_1212

seq1  GAATTCTGGTCGAAGCTGTTGAAAAGACTGTTCAGATCCTGCATTAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTCGAAGCTGTTGAAAAGACTGTTCAGATCCTGCATTAAAAA  50

seq1  AAAAAAATCACAAAGTCAACACTGGATAGAGAGTCACAATTTAAGTAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATCACAAAGTCAACACTGGATAGAGAGTCACAATTTAAGTAAAC  100

seq1  TGTAAATAGGTTTTATGAACTACAGTTTTAGAAGGAAAAGTTGATATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATAGGTTTTATGAACTACAGTTTTAGAAGGAAAAGTTGATATGTA  150

seq1  TAAACATACAATAAACCCAGTGGTCAGTAATTTTCACAAAAAGCATGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATACAATAAACCCAGTGGTCAGTAATTTTCACAAAAAGCATGTAT  200

seq1  TCTCTAATATTGTCTAAGTTCCATTGTTATTCCCATGAGAATTTTGAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAATATTGTCTAAGTTCCATTGTTATTCCCATGAGAATTTTGAGTA  250

seq1  ACAAAAATAGAACGTGTGTGTGTGTGTGTGTGTACACATACAATGTTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATAGAACGTGTGTGTGTGTGTGTGTGTACACATACAATGTTTAG  300

seq1  AAAGATATGACTACAGTTAGTCAGGTGGGACAAAAGGGATTTCTGATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATGACTACAGTTAGTCAGGTGGGACAAAAGGGATTTCTGATTTG  350

seq1  TGTGAGAGTACTGCACACATTCAAGTCAAATATATATTACATTGCTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAGTACTGCACACATTCAAGTCAAATATATATTACATTGCTTAAA  400

seq1  TAAAGGAACAGAACCTCTGATGCAGAGAACCAGAGAGGGGACAGATGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAACAGAACCTCTGATGCAGAGAACCAGAGAGGGGACAGATGAGG  450

seq1  AGGTGAGAGGGATAAATGCCAAAGAGATGGAGAGAATCATCACTTGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGAGGGATAAATGCCAAAGAGATGGAGAGAATCATCACTTGATTT  500

seq1  AGCGGTCTCACTTAGTCACACACCCTCAGTTGTTGCATGAGCCAGGTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGTCTCACTTAGTCACACACCCTCAGTTGTTGCATGAGCCAGGTTAA  550

seq1  TATCAAGTTGGTTCAGCCTTGGGTTAGGAGAATGTGACTTGGCTGTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGTTGGTTCAGCCTTGGGTTAGGAGAATGTGACTTGGCTGTCAGT  600

seq1  GCTGGGAAGCAGATTGTGCCTGTGGATAATGCCTTAACATGTTTTTCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAAGCAGATTGTGCCTGTGGATAATGCCTTAACATGTTTTTCAGA  650

seq1  TGAAGATTCTGAGCTCTGCTGAGAACAGAAAGAAAAAAGGCTGAAATACT  700
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGAAGATTCTGAGCTCTGCTGAGAACAGAAAGAAAAAAGGCTG-AATACT  699

seq1  GATCTTATATTACCAGTCAAATCCACCATAGTCCTTTGATATTGTATTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTATATTACCAGTCAAATCCACCATAGTCCTTTGATATTGTATTTC  749

seq1  TTTAATTACAGCCTCACCATTACAGTCACAGTTGTGATGATTAAAGAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTACAGCCTCACCATTACAGTCACAGTTGTGATGATTAAAGAACT  799

seq1  CCATTTTCAACCAAGTACCCTTCTTAGTAGCTACTGACCTAAATTTCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCAACCAAGTACCCTTCTTAGTAGCTACTGACCTAAATTTCTGA  849

seq1  AAGACAAACTATTAACCTGTACTCCAGAATGCTGTAACTGCTGTGAGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAACTATTAACCTGTACTCCAGAATGCTGTAACTGCTGTGAGATA  899

seq1  CTGAATTCCTTGCTCTGGTTTTTATAAGCCCACTGACTGATAAGTGGGAC  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTGAATTCCTTGCTCTGG-TTTTATAAGCCCACTGACTGATAAGTGGGAC  948

seq1  ACCTCCTTTACTGAGGAGTACAAGGAGCCACTCATGGCTGAAGGGAGCGA  1000
      | ||||||||||||||||||| ||||| |||||||||||||| |||||||
seq2  A-CTCCTTTACTGAGGAGTAC-AGGAG-CACTCATGGCTGAA-GGAGCGA  994

seq1  AGCAGTCTCTCATTCATCTACAAA-TTCCACCAAACCAAGATGACTGTGG  1049
      |||||||||||||||||||||||| |||||||||    |||||||||| |
seq2  AGCAGTCTCTCATTCATCTACAAATTTCCACCAA---CAGATGACTGT-G  1040

seq1  TCTCCACCTTTTAATCACTCGTCCTCAACACTC-ACAGCACTGAACCTAA  1098
      ||||||||||||||||||||||||||||||||| ||||||||| || |||
seq2  TCTCCACCTTTTAATCACTCGTCCTCAACACTCAACAGCACTG-ACTTAA  1089

seq1  TATACCTGGTAAAAGTCG-CTGTCTTCTTGAGATGTCCCAGGGGATGATA  1147
      ||||| || ||||  ||| ||||||||| || ||||||   |||||||||
seq2  TATACTTGTTAAAGTTCGCCTGTCTTCTGGA-ATGTCC--AGGGATGATA  1136

seq1  AGTCAAAATC  1157
      |||| |||||
seq2  AGTCCAAATC  1146