BAC Information

Click to search

BAC

Clone NameB6Ng01-316J21
Chromosome9 (Build37)
Map Location 11,385,718 - 11,386,597
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665178
Downstream geneLOC100039989, LOC622505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316J21.bB6Ng01-316J21.g
ACCGA106968GA106969
length1,196893
definitionB6Ng01-316J21.b B6Ng01-316J21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtatcccatttttaatatggtttattggttc
tctaaagtctaacttcttgagttccttgtatattttggatattaggcctc
tgctgtatttagggtaaataaagatcttttcccaatatgtaggttgctgt
tttgtccaattggcaatgtcatttgacttacagaggttttcaactttagg
agatccaattagtcaattgttgatattagagcctgagccattggtactct
gttcaggaaatttccccctgtgccaatgtggtcaagggtctttcccagtt
tctcttctactagattcagaatatctagttttatgtggaggtccttaatc
cactcagactggagatttgtttaaagagataagaatggataagtttgcat
tgttctacatgcagactgctagttgaaacaacacaatttattgaatatac
tgtttttatcccactggatgggtttggaatctttgtcaaagatccagtga
tcatagttgtgtgggtttaactctgggccttcaattctattctattgatc
tacctgtctgtctctgtaccaagaacatgtgttattttttttatcactgc
cttaggccactccagtcgggtataggggtccctgaatgagggtccttgaa
gctagtttggtaaggattcggagataacagacagaaactaacacagaggc
agtttgaatctgaatgtattttgcagctctcaagcaggggattatacatt
aaaaaatccaaacattacaactcttataaactgtatccagccaaacaatc
acaaataccaacaaaaatcctttgacacagaaaagtacaaaaagcatcca
aacattacaactctgaaactatgaaactatgtattcggtgaatcacaaac
agaacaggtaacatcattattaatatacatcatcaaaatatagcattcta
aaggatgtattcagtggggcagtcttccagggtagttgcatatttccaag
agcaggtttataaatctttatggtcagtgctctgaaccactggaactaac
tttccagctcaatatgggtaaatattatttaataattattcctggacatt
tttttattaatcctcaaccataagttgaacctctttcataccttccgatg
accccatggtaggccaattgtaattacttcggggaaagagctttta

gaattcttggtgcctggtggaaatcaatggctgttgagtgaccggaggat
aatgacagaataaagacctataatttttttatttttatttctactgatcc
ccaacattcttcagggtggaaaatattttatttttcacataatgctgaac
atacctagaagtgaaaatgtttcaaacattttaaaaaacataatgttttt
atttattttatgtatataagtacaatgtagctgtcttcagacatacctga
agagggcatcagatccagttacagatggttgcaagccaccatgtgctttg
ctgggaattgaactcaggacttcaggaagaggagacagtgctcttaacca
ctgagccatctccccagcatgccataatctcagcattctcatcagagcta
gaaaaagtagtactgaattttattgtaaaaatacaaaacaccttaattgt
caatggcaattctaagtggaaagggccatgctagactttttataatacta
gatctcaacttgtactacagagacactgtaacatcaccattgtggtacta
caacaaaatcagtcacaaaacaatagaatagaaaggagcagctataaatt
agtacacatggcaagagtcacctaggaattttcaaaggtataatatcttc
cttttaataaatagtcattggagtcaacatatggaagagtagtatttggt
tcataaatcaccgtgggggaaaaaaaaacaataaaaactgtttaaaatgc
cacaatgttcttgatataagacctagacatccaaagtttcttgtttaaaa
tgtagggacattttctcataagtaagcacaagtaagaaatgtacaaaaaa
acagcctactagcacagggaataaacaaaactgaaaaatgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_11385718_11386597
seq2: B6Ng01-316J21.g_67_948 (reverse)

seq1  AGTTTTGTTTATTCCCTGTGCTAGTAGGCTG-TTTTTTGTACATTTCTTA  49
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGTTTTGTTTATTCCCTGTGCTAGTAGGCTGTTTTTTTGTACATTTCTTA  50

seq1  CTTGTGCTTACTTATGAGAAAATGTCCCTACATTTTAAACAAGAAACTTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCTTACTTATGAGAAAATGTCCCTACATTTTAAACAAGAAACTTT  100

seq1  GGATGTCTAGGTCTTATATCAAGAACATTGTGGCATTTTAAACAGTTTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCTAGGTCTTATATCAAGAACATTGTGGCATTTTAAACAGTTTTT  150

seq1  ATTGTTTTTTTTTCCCCCACGGTGATTTATGAACCAAATACTACTCTTCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTTTTTTCCCCCACGGTGATTTATGAACCAAATACTACTCTTCC  200

seq1  ATATGTTGACTCCAATGACTATTTATTAAAAGGAAGATATTATACCTTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTGACTCCAATGACTATTTATTAAAAGGAAGATATTATACCTTTG  250

seq1  AAAATTCCTAGGTGACTCTTGCCATGTGTACTAATTTATAGCTGCTCCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCCTAGGTGACTCTTGCCATGTGTACTAATTTATAGCTGCTCCTT  300

seq1  TCTATTCTATTGTTTTGTGACTGATTTTGTTGTAGTACCACAATGGTGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCTATTGTTTTGTGACTGATTTTGTTGTAGTACCACAATGGTGAT  350

seq1  GTTACAGTGTCTCTGTAGTACAAGTTGAGATCTAGTATTATAAAAAGTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGTGTCTCTGTAGTACAAGTTGAGATCTAGTATTATAAAAAGTCT  400

seq1  AGCATGGCCCTTTCCACTTAGAATTGCCATTGACAATTAAGGTGTTTTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGCCCTTTCCACTTAGAATTGCCATTGACAATTAAGGTGTTTTGT  450

seq1  ATTTCTAC-ATAAAACTCAGTACTACTTTTTCTAGCTCTGATGAGAATGC  498
      |||| ||| |||||| ||||||||||||||||||||||||||||||||||
seq2  ATTTTTACAATAAAATTCAGTACTACTTTTTCTAGCTCTGATGAGAATGC  500

seq1  TGAGATTATGGCATGCTGGGGAGATGGCTCAGTGGTTAAGAGCACTGTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTATGGCATGCTGGGGAGATGGCTCAGTGGTTAAGAGCACTGTCT  550

seq1  CCTCTTCCTGAAGTCCTGAGTTCAATTCCCAGCAAAGCACATGGTGGCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCCTGAAGTCCTGAGTTCAATTCCCAGCAAAGCACATGGTGGCTT  600

seq1  GCAACCATCTGTAACTGGATCTGATGCCCTCTTCAGGTATGTCTGAAGAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCATCTGTAACTGGATCTGATGCCCTCTTCAGGTATGTCTGAAGAC  650

seq1  AGCTACATTGTACTTATATACATAAAATAAATAAAAACATTATGTTTTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACATTGTACTTATATACATAAAATAAATAAAAACATTATGTTTTTT  700

seq1  AAAATGTTTGAAACATTTTCACTTCTAGGTATGTTCAGCATTATGTGAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTTGAAACATTTTCACTTCTAGGTATGTTCAGCATTATGTGAAA  750

seq1  AATAAAATATTTTCCACCCTGAAGAATGTTGGGGATCAGTAGAAATAAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATATTTTCCACCCTGAAGAATGTTGGGGATCAGTAGAAATAAAA  800

seq1  ATAAAAAAATTATAGGTCTTTATTCTGTCATTATCCTCCGGTCACTCAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAATTATAGGTCTTTATTCTGTCATTATCCTCCGGTCACTCAAC  850

seq1  AGCCATTGATTTCCACCAGGCACCAAGAATTC  880
      ||||||||||||||||||||||||||||||||
seq2  AGCCATTGATTTCCACCAGGCACCAAGAATTC  882


| Home | SequenceCutter | Blast | Download |