BAC Information

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BAC

Clone NameB6Ng01-317A03
Chromosome9 (Build37)
Map Location 26,449,465 - 26,592,852
singlet/doubletdoublet
Overlap geneB3gat1, BC038479
Upstream genenone
Downstream geneGlb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b, Spata19, LOC666440, LOC100041202
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317A03.bB6Ng01-317A03.g
ACCGA107258GA107259
length1,209525
definitionB6Ng01-317A03.b B6Ng01-317A03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,449,465 - 26,450,681)(26,592,328 - 26,592,852)
sequence
gaattcctgtgtgttttgagggtcaagcacttctctaagacacagtctca
aagaggcaatcaatgcagtagccatcactgatacttgtccctgtataccc
atcatgtcacatactccctatgacagcactgcaacactaaggtcacccat
ttacagcaagggaaaaaaagaaacacctggttaagaacacatccattaac
agcgtagccatgcccggatggttgcctgtttagcttaccattgtgaaaac
ctgggaggaggagatgccctaacctgtgctggctctgcctgtatttttgg
gccagatttcaggttgagatctaagctcatcataggttctgaagaaacca
cagttactcctcctgtcatcagcccatcctacccagcacagtctcttgca
gtggcagaacccctccttctccatcactaccctggagccacccacttcct
gaatgcttacaacacttagccactcagtctttgactccgccaaaaaaaaa
aaaaaaaaaaaaataaggccctgagtaccttgcaagattgacaggtgcac
agcagtgctgggcttggtggcaggagacacatgtgaagaaggagagagca
atagcaactggttcagatggcacagcttcagcctgcattgaaagccactc
tagtgagtgatttcgtgcaacaaactgttaaaacatgctgagaggggagc
ttaaaacagcttggcattaaaaccttactctctggtgaaactttgctctc
cctatttataaacagaaaaacaactgccctgtttgctgggaagattagat
gaaagtttcttgcggctaaaaacaagcaagagacaaaaaggagcagaatt
tcttagttcatacaaaatacagtagtacaggccgggttggggcattgcat
cttttacactctagacagaaaaccactctagactgacaggcaatgtgagt
ggtgggtcacttctgtaaagttagaccctcaaatacgatagttagagata
ccagaaactcctctcacaattatgcccaagttctcccttaaggcgtgcaa
atccagaatttcatcatatgggttatgatgaataaacaccagtgccaagg
aaatgcaccacgcctaatttctatgccaacagctggcagcattccttctt
gtactttctgtttccggttcaatggtctcatcttagaaccttgaaacact
gactctttg
gaattcatgtattccctctgggttactcagttgtatgtagttgtttaaag
ttctcttttaaaaaccataattctttcatttatcatttgctcatttcata
catttatgctatttaattttgaccatattcacttgcattcctcacttcaa
ccccttctggacctccccttgcaaaccatgggatttatataaattctaat
ataaatataaatataaatataaatataaatataaatataaatataaatat
aaatataaatataaatataaatataaatgtgtgtgtatgtatacatatat
aaaaattattttgtatttataaaatataaatatgtatatttcaattagga
ctgcaaatatgtgtatggttttggggcctttcactaggacatggacctcc
agctggggtgtttgtgtgtggagcgctgcacacctgaagaacactgactc
ttctccattacatctcagccgccctaacctctgcctcttattaccttcct
gccttctgttttgggatttttctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_26449465_26450681
seq2: B6Ng01-317A03.b_43_1251

seq1  GAATTCCTGTGTGTTTTGAGGGTCAAGCACTTCTCTAAGACACAGTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGTGTTTTGAGGGTCAAGCACTTCTCTAAGACACAGTCTCA  50

seq1  AAGAGGCAATCAATGCAGTAGCCATCACTGATACTTGTCCCTGTATACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCAATCAATGCAGTAGCCATCACTGATACTTGTCCCTGTATACCC  100

seq1  ATCATGTCACATACTCCCTATGACAGCACTGCAACACTAAGGTCACCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTCACATACTCCCTATGACAGCACTGCAACACTAAGGTCACCCAT  150

seq1  TTACAGCAAGGGAAAAAAAGAAACACCTGGTTAAGAACACATCCATTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCAAGGGAAAAAAAGAAACACCTGGTTAAGAACACATCCATTAAC  200

seq1  AGCGTAGCCATGCCCGGATGGTTGCCTGTTTAGCTTACCATTGTGAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTAGCCATGCCCGGATGGTTGCCTGTTTAGCTTACCATTGTGAAAAC  250

seq1  CTGGGAGGAGGAGATGCCCTAACCTGTGCTGGCTCTGCCTGTATTTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGGAGGAGATGCCCTAACCTGTGCTGGCTCTGCCTGTATTTTTGG  300

seq1  GCCAGATTTCAGGTTGAGATCTAAGCTCATCATAGGTTCTGAAGAAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATTTCAGGTTGAGATCTAAGCTCATCATAGGTTCTGAAGAAACCA  350

seq1  CAGTTACTCCTCCTGTCATCAGCCCATCCTACCCAGCACAGTCTCTTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACTCCTCCTGTCATCAGCCCATCCTACCCAGCACAGTCTCTTGCA  400

seq1  GTGGCAGAACCCCTCCTTCTCCATCACTACCCTGGAGCCACCCACTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGAACCCCTCCTTCTCCATCACTACCCTGGAGCCACCCACTTCCT  450

seq1  GAATGCTTACAACACTTAGCCACTCAGTCTTTGACTCCGCCAAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTTACAACACTTAGCCACTCAGTCTTTGACTCCGCCAAAAAAAAA  500

seq1  AAAAAAAAAAAAATAAGGCCCTGAGTACCTTGCAAGATTGACAGGTGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAATAAGGCCCTGAGTACCTTGCAAGATTGACAGGTGCAC  550

seq1  AGCAGTGCTGGGCTTGGTGGCAGGAGACACATGTGAAGAAGGAGAGAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGCTGGGCTTGGTGGCAGGAGACACATGTGAAGAAGGAGAGAGCA  600

seq1  ATAGCAACTGGTTCAGATGGCACAGCTTCAGCCTGCATTGAAAGCCACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAACTGGTTCAGATGGCACAGCTTCAGCCTGCATTGAAAGCCACTC  650

seq1  TAGTGAGTGATTTCGTGCAACAAACTGTTAAAACATGCTGAGAGGGGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGTGATTTCGTGCAACAAACTGTTAAAACATGCTGAGAGGGGAGC  700

seq1  TTAAAACAGCTTGGCATTAAAACCTTACTCTCTGGTGAAACTTTGCTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAGCTTGGCATTAAAACCTTACTCTCTGGTGAAACTTTGCTCTC  750

seq1  CCTATTTATAAACAGAAAAACAACTGCCCTGTTTGCTGGGAAGATTAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTATAAACAGAAAAACAACTGCCCTGTTTGCTGGGAAGATTAGAT  800

seq1  GAAAGTTTCTTG-GGCTAAAAACAAGCAAGAGACAAAAAGGAGCAGAATT  849
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTTCTTGCGGCTAAAAACAAGCAAGAGACAAAAAGGAGCAGAATT  850

seq1  TCTTAGTTCATACAAAATACAGTAGTACAGGCCGGGTTGGGGCATTGCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTTCATACAAAATACAGTAGTACAGGCCGGGTTGGGGCATTGCAT  900

seq1  CTTTTACACTCTAGACAGAAAACCACCTCTAGACTGACAGGCAATGTGAG  949
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTTTTACACTCTAGACAGAAAACCA-CTCTAGACTGACAGGCAATGTGAG  949

seq1  TGGTGGGTCACTTCTGTAAAGTTAGACCCTCAAATACGATAGTTAGAAGA  999
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGGTGGGTCACTTCTGTAAAGTTAGACCCTCAAATACGATAGTTAG-AGA  998

seq1  TACCAAGAAACTCCTCTCACAA-TATGCCCCAAGTTTCTCCCCTTAAAGC  1048
      |||| ||||||||||||||||| |||| |||||| |||||||  | ||| 
seq2  TACC-AGAAACTCCTCTCACAATTATG-CCCAAG-TTCTCCC--TTAAGG  1043

seq1  CGTGCCAAAATCCAGAATTTCATCATTATGGGTTTATGATGAATAAACAC  1098
      |||||  |||||||||||||||||| |||||| |||||||||||||||||
seq2  CGTGC--AAATCCAGAATTTCATCA-TATGGG-TTATGATGAATAAACAC  1089

seq1  CAGTGCCAAAGGAAAT-CACCACGGCTATATTCTATCCCAACAGCT-GCA  1146
      ||||||| |||||||| ||||||| |||  |||||| ||||||||| |||
seq2  CAGTGCC-AAGGAAATGCACCACGCCTAATTTCTATGCCAACAGCTGGCA  1138

seq1  GCA-TCCTCTCTGTACTTTCTGTCTCCGCTTCCATCTGCTCATC-TAGCA  1194
      ||| ||||   |||||||||||| |||| ||| ||   |||||| ||| |
seq2  GCATTCCTTCTTGTACTTTCTGTTTCCGGTTCAATGGTCTCATCTTAGAA  1188

seq1  ACTAGAAAACAACTGACTCTTTG  1217
       || ||||   ||||||||||||
seq2  CCTTGAAA--CACTGACTCTTTG  1209

seq1: chr9_26592328_26592852
seq2: B6Ng01-317A03.g_67_591 (reverse)

seq1  TCAGAAAAATCCCAAAACAGAAGGCAGGAAGGTAATAAGAGGCAGAGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAAATCCCAAAACAGAAGGCAGGAAGGTAATAAGAGGCAGAGGTT  50

seq1  AGGGCGGCTGCTATGTACTGGAGAAGAGTCAGTTTTCTTCAGGTGTGCAG  100
      ||||||||||  ||||| ||||||||||||||| ||||||||||||||||
seq2  AGGGCGGCTGAGATGTAATGGAGAAGAGTCAGTGTTCTTCAGGTGTGCAG  100

seq1  CGCTCCACACACAAACACCCCAGCTGGAGGTCCATGCGCTAGTGAATGGC  150
      ||||||||||||||||||||||||||||||||||||  |||||||| |||
seq2  CGCTCCACACACAAACACCCCAGCTGGAGGTCCATGTCCTAGTGAAAGGC  150

seq1  CCCAAAACCATACACATATCTGCAGTCCTAATTGAAATATACATATTTAT  200
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCCAAAACCATACACATATTTGCAGTCCTAATTGAAATATACATATTTAT  200

seq1  ATTTTATAAATACAAACTAATTTTTATATATGTATACATACACACACATT  250
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATTTTATAAATACAAAATAATTTTTATATATGTATACATACACACACATT  250

seq1  TATATTTATATTTATATTTATATTTATATTTATATTTATATTTATATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTATATTTATATTTATATTTATATTTATATTTATATTTATATTTA  300

seq1  TATTTATATTTATATTTATATTTATATTAGAATTTATATAAATCCCATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATATTTATATTTATATTTATATTAGAATTTATATAAATCCCATGG  350

seq1  TTTGCAAGGGGAGGTCCAGAAGGGGCTGAAGTGAGGAATGCAAGTGAATA  400
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTGCAAGGGGAGGTCCAGAAGGGGTTGAAGTGAGGAATGCAAGTGAATA  400

seq1  TGGTCAAAATTAAATAGCATAAATGTATGAAATGAGCAAATGATAAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAAAATTAAATAGCATAAATGTATGAAATGAGCAAATGATAAATGA  450

seq1  AAGAATTATGGTTTTTAAAAGAGAAGTTTAAACAACTATATACAACTGAG  500
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  AAGAATTATGGTTTTTAAAAGAGAACTTTAAACAACTACATACAACTGAG  500

seq1  TAACCCAGATGAAATACATGAATTC  525
      ||||||||| | |||||||||||||
seq2  TAACCCAGAGGGAATACATGAATTC  525