BAC Information

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BAC

Clone NameB6Ng01-317B05
Chromosome9 (Build37)
Map Location 23,901,054 - 23,901,907
singlet/doubletsinglet
Overlap genenone
Upstream geneBmper, LOC100040866, LOC100040878, LOC100040893
Downstream geneNpsr1, Dpy19l1, Cypt4, Tbx20, LOC666251, LOC100040960
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317B05.bB6Ng01-317B05.g
ACCGA107310GA107311
length1,156854
definitionB6Ng01-317B05.b B6Ng01-317B05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagaa
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcaaaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatgcactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgcccacagtcagctaatggatggatcacaggctcccaa
tggaggagctagagaaagtacccaaggagctaaagggatctgcaacccta
tagtggatcacatatgactaccagtaccccggagctctgactctagctgc
atatgtatcaaagatgctagtcggcatcactggaaagaagaggccatgga
cacacaaactttatatgccccagaaacaggggacgcagggcaaaacgggg
agtggc

gaattcagttttaaatattctctaggacctgaagttggaataaccaaagc
cacaagcctgattctttacagtcacagtcaatctgtgagccatgtaggcc
aacctttgctttactgcccccaataactgttacgggttctctatcacaaa
agaacacaacttaggaaaatatcctggggaagtcttagtgtgacttatcc
agcagcaggaagaagtcagtgggctggacaagggaagacattaagtccac
aagagaagggcttccacatgccagagctgagtaagtgcattcctagagaa
agggtcaaaattaaacaaagactcaacgacaaaccaaacacctctctgcc
gaggttcttctggcaaaggaacatgggaagatgctcaaccacaatggcaa
agcaaaacaatttaggcagaactcaaatctaggggcacagacaggagatg
acaatcccgaaatattgacaagattaaagggaaatttaaaaaaaatgagt
gtatgttttcattctgatataacttagttggcatggtaacttcggagagc
agaatgtcatgaggttggaatcatacttggtgatatcccttttatattgg
gttattttcaatgtgttaactttgggggtgttcattacgctgcacttttt
aagacatgaatttttctataagaattttatgcttcaacagtatttctttt
ttattgaaaatagatttttttcatactatcgtattttgatcatggtttcc
cctcctccagctcttcccagattctccttatttcctcactcacaaatcca
cacaagctttttattctctctctctctctctctctctctctctctctctc
tctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_23901054_23901907
seq2: B6Ng01-317B05.g_64_917 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATAAAAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATAAAAAGCT  50

seq1  TGTGTGGATTTGTGAGTGAGGAAATAAGGAGAATCTGGGAAGAGCTGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGATTTGTGAGTGAGGAAATAAGGAGAATCTGGGAAGAGCTGGAG  100

seq1  GAGGGGAAACCATGATCAAAATACGATAGTATGAAAAAAATCTATTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAAACCATGATCAAAATACGATAGTATGAAAAAAATCTATTTTCA  150

seq1  ATAAAAAAGAAATACTGTTGAAGCATAAAATTCTTATAGAAAAATTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAGAAATACTGTTGAAGCATAAAATTCTTATAGAAAAATTCATG  200

seq1  TCTTAAAAAGTGCAGCGTAATGAACACCCCCAAAGTTAACACATTGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAAAGTGCAGCGTAATGAACACCCCCAAAGTTAACACATTGAAAA  250

seq1  TAACCCAATATAAAAGGGATATCACCAAGTATGATTCCAACCTCATGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCAATATAAAAGGGATATCACCAAGTATGATTCCAACCTCATGACA  300

seq1  TTCTGCTCTCCGAAGTTACCATGCCAACTAAGTTATATCAGAATGAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTCTCCGAAGTTACCATGCCAACTAAGTTATATCAGAATGAAAAC  350

seq1  ATACACTCATTTTTTTTAAATTTCCCTTTAATCTTGTCAATATTTCGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTCATTTTTTTTAAATTTCCCTTTAATCTTGTCAATATTTCGGGA  400

seq1  TTGTCATCTCCTGTCTGTGCCCCTAGATTTGAGTTCTGCCTAAATTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATCTCCTGTCTGTGCCCCTAGATTTGAGTTCTGCCTAAATTGTTT  450

seq1  TGCTTTGCCATTGTGGTTGAGCATCTTCCCATGTTCCTTTGCCAGAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGCCATTGTGGTTGAGCATCTTCCCATGTTCCTTTGCCAGAAGAA  500

seq1  CCTCGGCAGAGAGGTGTTTGGTTTGTCGTTGAGTCTTTGTTTAATTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGCAGAGAGGTGTTTGGTTTGTCGTTGAGTCTTTGTTTAATTTTGA  550

seq1  CCCTTTCTCTAGGAATGCACTTACTCAGCTCTGGCATGTGGAAGCCCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTCTAGGAATGCACTTACTCAGCTCTGGCATGTGGAAGCCCTTC  600

seq1  TCTTGTGGACTTAATGTCTTCCCTTGTCCAGCCCACTGACTTCTTCCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGGACTTAATGTCTTCCCTTGTCCAGCCCACTGACTTCTTCCTGC  650

seq1  TGCTGGATAAGTCACACTAAGACTTCCCCAGGATATTTTCCTAAGTTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGATAAGTCACACTAAGACTTCCCCAGGATATTTTCCTAAGTTGTG  700

seq1  TTCTTTTGTGATAGAGAACCCGTAACAGTTATTGGGGGCAGTAAAGCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGTGATAGAGAACCCGTAACAGTTATTGGGGGCAGTAAAGCAAA  750

seq1  GGTTGGCCTACATGGCTCACAGATTGACTGTGACTGTAAAGAATCAGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCCTACATGGCTCACAGATTGACTGTGACTGTAAAGAATCAGGCT  800

seq1  TGTGGCTTTGGTTATTCCAACTTCAGGTCCTAGAGAATATTTAAAACTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTTTGGTTATTCCAACTTCAGGTCCTAGAGAATATTTAAAACTGA  850

seq1  ATTC  854
      ||||
seq2  ATTC  854


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