BAC Information

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BAC

Clone NameB6Ng01-317C19
Chromosome9 (Build37)
Map Location 82,728,498 - 82,729,706
singlet/doubletsinglet
Overlap geneIrak1bp1
Upstream gene4930486G11Rik, LOC100039085
Downstream genePhip, LOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317C19.bB6Ng01-317C19.g
ACCGA107386GA107387
length1,1971,198
definitionB6Ng01-317C19.b B6Ng01-317C19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagatttttatatatattggttattagtccc
ctatctgatttaggataggtaaagatcctttctcaatctgttggtggcct
ttttgtcttattgacagtatcttttgccttacagaagctttgcaaattta
tgaggtcccatttgtcgattctcggtcttacagcacaagccattgctttt
ctattcaggaatttttcccatgtgtcgataactttgaggcttttccccac
tttctcctctataagtttcactgtctctggttttatgtggagttccttga
tccacttagatttgaccttagtacaaggagatagaaatggatcaatttgc
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctctcttgtcaaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcatttctgttccattgg
tctacttgtctgtcactataccagtaccatgcaatttttatcacaattgc
tctgtagtacagctttaggtcaggcatggtgattccaccagaagttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatattcagattgccctttctaattagttgaagaattgagttggaacttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttactctattgatcctgccaatacatgagcatggcagatctttccatctt
ctgagatcttctttatttctttcgtcagagacttgaagttttatcattca
gatctttcacttccttagagtcacgcgaaggaattttttattatttgtga
ctattgtgaagttgttgtttccctaatttctttctcagcctgttatcttt
gtgtagagaaagccattgacttgtttgactaattttattatcagctactt
cactgaagcctgttaatcaagctaggagttctcctgtgtggagttagttc
actttattaactatccaataatctgcaatgaattgactctctcttccaat
tgattctgatccttgtggtgaatgtctggccgaggaacttcaacgac
gaattccatcctgagattaaggtctgacagcctgtttcatgcctttcctg
ccccagtttgcaaatgttaaattcactcgttgtgccttacagctccttgg
gttttgacaggcgcacacagtgaagtatcaagcactccagcccagagaag
aatagttcttccacattaacagttcccctgtgcatctcctttatagtcaa
ccatttattgtctccacaggtttgcgttttctgaatgttatatgaatgga
ataatgaaacatttgtcttcctttttggtctggctttttacttccaaata
tgcatctaaatggccacattttgtctacactataggtaagcgaccagaga
tactgtaaacatccttcaatatacaggttaagccaacaagagtgacttat
tcagctcagcacgtcattagtgctaaagctaataaatctaccataccagt
ctggtttatgaggctttcctgactaaactatttttgtttctatgtacata
taaaaaggcagacttttaaggtgaaatggtcaattcaggactagctattt
acataatatgaaaaggtagggtgacagactcagtagcccaatgtaagaat
aaactcaaaaaatgaaaaccttacaactgttcagaaaagaactgaataaa
ctgactacaatactgtaaaaccagcatttatcctgaaatatatatgctta
gtatcaaatataaagagaagttttacttgctatgtagaggtttccaccat
ctagaattacaaactgaatctccacgtccccatttaacacgcaagccctg
ttctctgcaggcaagaaatctttccagtagatcagtaaggaagggagaat
agggtctcaaaggttttacaaagatttaataatttaagcagtgtggataa
tataggagtaccacgtgaactattattactctctgtctggctcaaaatag
cttgaagaatgcaaaaaaccaatgacttgaatatttcaaaacaatcagac
cataaaagaatctcatgtcatagtatgttcctactctaagcagcactgtg
tgatgcgtgaatcctgagaaaatcctaacatttgattacacattgctggc
cacaagaacattgcagaatataaaaaataagctaatttgtctgtacattt
ctctttgcaaaacagaagtaagttgtcaattcaggccttatcttatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_82728498_82729706
seq2: B6Ng01-317C19.g_66_1263 (reverse)

seq1  CTATAAG-TAAAGCCTGAATGGACAACCTCACTTCTGTTTGTGGCAAGAG  49
      ||||||| ||| |||||||| ||||| || |||||||||  | |||| ||
seq2  CTATAAGATAAGGCCTGAATTGACAA-CTTACTTCTGTT--TTGCAA-AG  46

seq1  AGAAATGCTACAGACAAATTAGCTTTTATTTTTATA-TCTGC-ATGT--C  95
      ||||||| ||||||||||||||||| | |||||||| ||||| ||||   
seq2  AGAAATG-TACAGACAAATTAGCTTAT-TTTTTATATTCTGCAATGTTCT  94

seq1  TGTGGCAAGCAAATGTGGTAATCCAAAATGGTTGAGATCTCTCAGGATTC  145
      |||||| ||| ||||| ||||||  ||||| | |   | |||||||||||
seq2  TGTGGCCAGC-AATGT-GTAATC--AAATGTTAGGATTTTCTCAGGATTC  140

seq1  ACCGCAATCACACAGTTGCTGCTTAGGAGTAGGAACATAACTATGACATG  195
      | ||| ||||||||| ||||||||| |||||||||||| |||||||||||
seq2  A-CGC-ATCACACAG-TGCTGCTTA-GAGTAGGAACAT-ACTATGACATG  185

seq1  AGAATTCTTTATGGTCTTGATTGTTTTGAAATATTCCAAGTCATTGGTTT  245
      ||| |  ||||||||| |||||||||||||||||| ||||||||||||||
seq2  AGATTCTTTTATGGTC-TGATTGTTTTGAAATATT-CAAGTCATTGGTTT  233

seq1  TTTGCATTC-TCAAGCTATTTTGAGCCAGACAGAGAGTAATAATAGTTCA  294
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTCTTCAAGCTATTTTGAGCCAGACAGAGAGTAATAATAGTTCA  283

seq1  CGTGGTACTCCTATATTATCCACACTGCTTAAATTATTAAATCTTTGTAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTACTCCTATATTATCCACACTGCTTAAATTATTAAATCTTTGTAA  333

seq1  AACCTTTGAGACCCTATTCTCCCTTCCTTACTGATCTACTGGAAAGATTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTGAGACCCTATTCTCCCTTCCTTACTGATCTACTGGAAAGATTT  383

seq1  CTTGCCTGCAGAGAACAGGGCTTGCGTGTTAAATGGGGACGTGGAGATTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTGCAGAGAACAGGGCTTGCGTGTTAAATGGGGACGTGGAGATTC  433

seq1  AGTTTGTAATTCTAGATGGTGGAAACCTCTACATAGCAAGTAAAACTTCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTAATTCTAGATGGTGGAAACCTCTACATAGCAAGTAAAACTTCT  483

seq1  CTTTATATTTGATACTAAGCATATATATTTCAGGATAAATGCTGGTTTTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATATTTGATACTAAGCATATATATTTCAGGATAAATGCTGGTTTTA  533

seq1  CAGTATTGTAGTCAGTTTATTCAGTTCTTTTCTGAACAGTTGTAAGGTTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTGTAGTCAGTTTATTCAGTTCTTTTCTGAACAGTTGTAAGGTTT  583

seq1  TCATTTTTTGAGTTTATTCTTACATTGGGCTACTGAGTCTGTCACCCTAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTTGAGTTTATTCTTACATTGGGCTACTGAGTCTGTCACCCTAC  633

seq1  CTTTTCATATTATGTAAATAGCTAGTCCTGAATTGACCATTTCACCTTAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATATTATGTAAATAGCTAGTCCTGAATTGACCATTTCACCTTAA  683

seq1  AAGTCTGCCTTTTTATATGTACATAGAAACAAAAATAGTTTAGTCAGGAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGCCTTTTTATATGTACATAGAAACAAAAATAGTTTAGTCAGGAA  733

seq1  AGCCTCATAAACCAGACTGGTATGGTAGATTTATTAGCTTTAGCACTAAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCATAAACCAGACTGGTATGGTAGATTTATTAGCTTTAGCACTAAT  783

seq1  GACGTGCTGAGCTGAATAAGTCACTCTTGTTGGCTTAACCTGTATATTGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGCTGAGCTGAATAAGTCACTCTTGTTGGCTTAACCTGTATATTGA  833

seq1  AGGATGTTTACAGTATCTCTGGTCGCTTACCTATAGTGTAGACAAAATGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTTTACAGTATCTCTGGTCGCTTACCTATAGTGTAGACAAAATGT  883

seq1  GGCCATTTAGATGCATATTTGGAAGTAAAAAGCCAGACCAAAAAGGAAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTTAGATGCATATTTGGAAGTAAAAAGCCAGACCAAAAAGGAAGA  933

seq1  CAAATGTTTCATTATTCCATTCATATAACATTCAGAAAACGCAAACCTGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTTCATTATTCCATTCATATAACATTCAGAAAACGCAAACCTGT  983

seq1  GGAGACAATAAATGGTTGACTATAAAGGAGATGCACAGGGGAACTGTTAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAATAAATGGTTGACTATAAAGGAGATGCACAGGGGAACTGTTAA  1033

seq1  TGTGGAAGAACTATTCTTCTCTGGGCTGGAGTGCTTGATACTTCACTGTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAGAACTATTCTTCTCTGGGCTGGAGTGCTTGATACTTCACTGTG  1083

seq1  TGCGCCTGTCAAAACCCAAGGAGCTGTAAGGCACAACGAGTGAATTTAAC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCCTGTCAAAACCCAAGGAGCTGTAAGGCACAACGAGTGAATTTAAC  1133

seq1  ATTTGCAAACTGGGGCAGGAAAGGCATGAAACAGGCTGTCAGACCTTAAT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAAACTGGGGCAGGAAAGGCATGAAACAGGCTGTCAGACCTTAAT  1183

seq1  CTCAGGATGGAATTC  1209
      |||||||||||||||
seq2  CTCAGGATGGAATTC  1198