BAC Information

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BAC

Clone NameB6Ng01-318J16
Chromosome9 (Build37)
Map Location 38,393,523 - 38,572,238
singlet/doubletdoublet
Overlap geneOlfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920
Upstream geneSpa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912
Downstream geneOlfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318J16.bB6Ng01-318J16.g
ACCGA108449GA108450
length1,0031,081
definitionB6Ng01-318J16.b B6Ng01-318J16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,571,240 - 38,572,238)(38,393,523 - 38,394,605)
sequence
gaattcaagttagggcttacctcatagtgttaattataattttatatatt
aacatttttaactttgtgcaattattattttttaatttattttttaatta
ggtattttcttcatttacatttcaaatgctatccccaaaatcccccagac
cctctccccccacttccctcccccctcccacttcttggccctggcgttcc
cccatactgaggcatataaagtttgcaagaccaaggcattatttattcta
aatttaatatttcactttgttagtgctatgcttcctgttggtataacatt
aaacagttttagtgagctaaggtaactcttcaccttcccgtttgcttctg
aagagatatgagaagaggcagaatatgtgcactaggaagcaagagatagg
aatcaaagatggaagaacttatcaagactgagatatgacctagtatatcc
tccaatggactgccaaagctggtcacagaaaagacatgtgaaaacattaa
tgagatcaaggaggtgccacagaaagaaactgagacctcaatgttacata
ttgagatccagaaacaagacattccgtagggtgaattataaatatcctaa
ctgaagaccagcttttggaaatttcctcagattttaatgtcacagcagaa
aatcgccaagcccagatgtcacactgtgaaaatcattgacccccaaggag
catccacgacgacagtttgaaaatgagtaagttttagtacccatcttgtg
gtgcgtgtgatccctgcagcccaatgtagaatgggccagagaagcaaaag
agagcaaagcatcaatgtaggttgtgctggcttttcataagaggtaagtg
cacctgtaaggaaaatgtttaaaatgacaaccaccatatttagataagaa
tcagaactcaatgagaactaagtttagtgtaagaaaaaaattcaagtagc
ttacaaaggaaagactttgagtgatggttttcaacctttattatcttcat
gac
gaattccagacattggacagttggagattgattttccttttgattgtgag
tgtgccctgatattttcccctcttgatggaagtattttagtggagcccac
agtaagagacttttaattgtaaaaagactttggattttaaaagagattag
atattttaaagggattgaaattttaagaattttcaaagactgtgggactc
ttaaagttatttagagttccatgccaagcatcttccctctgaacatcagc
tctattcacggctagtcataaaggctctatcacctcccaaaagaggatga
tgaggaaacaggaaaacactttttgaaagaaaggtagattaattgattgg
aagggaccagcaacttctcacatttttcatacaaactattaacaattaat
tatggatacataaaactggctaggaggtaataagattttataaaaagagt
tttagaggtttaatgtgattttatttatacttgctcatctgttttgttta
ggaagttatcaaagattatattattattccctttttatttaatgataaaa
gggaattcatgggactctcacaaattagtcattttaatgagtgaagatga
cctcatggagccatttacatcagagcttatctctgatgtatgtgcactgg
cattttacaaatagtgaaaaataattttgtttttataaacagtgtgttct
ttcttttatatttcacaatttaagatcatctgtcctttggctgcttgccc
agaggtgatacagctggatcccttggtagacagttatagttttagaaaac
cctccatttagctgttccacctcatttccaatgagatgcatgggactaga
tgaataaattattattatatttgatccatgtatgcagtgtacatgagtaa
agacaacatacctctgattatatgtggaccaatttttgtcactaagagaa
tctataccttttcttgaaaactaataaaataagcataaatgtagtggaag
gaactttaatggctaaatattgtgattccttcgtttacagttcactgtgg
ctttgtgtactaaacaggattggatatgttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_38571240_38572238
seq2: B6Ng01-318J16.b_46_1048 (reverse)

seq1  GTCATGAAGATATTAAAGTTTG-AAACCATCACTCAAAGTC-TTCCTTTG  48
      |||||||||||| ||||| ||| |||||||||||||||||| ||||||||
seq2  GTCATGAAGATAATAAAGGTTGAAAACCATCACTCAAAGTCTTTCCTTTG  50

seq1  TAGCCTACTTG-ATTTTTTTCTTACACTAAACTTAGTTTCTCATTGAGTT  97
      ||  ||||||| |||||||||||||||||||||||| |||||||||||||
seq2  TAAGCTACTTGAATTTTTTTCTTACACTAAACTTAG-TTCTCATTGAGTT  99

seq1  CTGATTCTTATCTAAATATGGTGGTTGTCATTTTAAACA-TTTCCTTACA  146
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTGATTCTTATCTAAATATGGTGGTTGTCATTTTAAACATTTTCCTTACA  149

seq1  GGTGCACTTACCTCTTATG-AAAGCCAGCACAACCTACATTGATGCTTTG  195
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGTGCACTTACCTCTTATGAAAAGCCAGCACAACCTACATTGATGCTTTG  199

seq1  CTCTCTTTTGCTTCTCTGGCCCATTCTACATTGGGCTGCAGGGATCACAC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTTGCTTCTCTGGCCCATTCTACATTGGGCTGCAGGGATCACAC  249

seq1  GCACCACAAGATGGGTACTAAAACTTACTCATTTTCAAACTGTCGTCGTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACAAGATGGGTACTAAAACTTACTCATTTTCAAACTGTCGTCGTG  299

seq1  GATGCTCCTTGGGGGTCAATGATTTTCACAGTGTGACATCTGGGCTTGGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCCTTGGGGGTCAATGATTTTCACAGTGTGACATCTGGGCTTGGC  349

seq1  GATTTTCTGCTGTGACATTAAAATCTGAGGAAATTTCCAAAAGCTGGTCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCTGCTGTGACATTAAAATCTGAGGAAATTTCCAAAAGCTGGTCT  399

seq1  TCAGTTAGGATATTTATAATTCACCCTACGGAATGTCTTGTTTCTGGATC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAGGATATTTATAATTCACCCTACGGAATGTCTTGTTTCTGGATC  449

seq1  TCAATATGTAACATTGAGGTCTCAGTTTCTTTCTGTGGCACCTCCTTGAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATGTAACATTGAGGTCTCAGTTTCTTTCTGTGGCACCTCCTTGAT  499

seq1  CTCATTAATGTTTTCACATGTCTTTTCTGTGACCAGCTTTGGCAGTCCAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAATGTTTTCACATGTCTTTTCTGTGACCAGCTTTGGCAGTCCAT  549

seq1  TGGAGGATATACTAGGTCATATCTCAGTCTTGATAAGTTCTTCCATCTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGATATACTAGGTCATATCTCAGTCTTGATAAGTTCTTCCATCTTT  599

seq1  GATTCCTATCTCTTGCTTCCTAGTGCACATATTCTGCCTCTTCTCATATC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTATCTCTTGCTTCCTAGTGCACATATTCTGCCTCTTCTCATATC  649

seq1  TCTTCAGAAGCAAACGGGAAGGTGAAGAGTTACCTTAGCTCACTAAAACT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGAAGCAAACGGGAAGGTGAAGAGTTACCTTAGCTCACTAAAACT  699

seq1  GTTTAATGTTATACCAACAGGAAGCATAGCACTAACAAAGTGAAATATTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATGTTATACCAACAGGAAGCATAGCACTAACAAAGTGAAATATTA  749

seq1  AATTTAGAATAAATAATGCCTTGGTCTTGCAAACTTTATATGCCTCAGTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGAATAAATAATGCCTTGGTCTTGCAAACTTTATATGCCTCAGTA  799

seq1  TGGGGGAACGCCAGGGCCAAGAAGTGGGAGGGGGGAGGGAAGTGGGGGGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAACGCCAGGGCCAAGAAGTGGGAGGGGGGAGGGAAGTGGGGGGA  849

seq1  GAGGGTCTGGGGGATTTTGGGGATAGCATTTGAAATGTAAATGAAGAAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTCTGGGGGATTTTGGGGATAGCATTTGAAATGTAAATGAAGAAAA  899

seq1  TACCTAATTAAAAAATAAATTAAAAAATAATAATTGCACAAAGTTAAAAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAATTAAAAAATAAATTAAAAAATAATAATTGCACAAAGTTAAAAA  949

seq1  TGTTAATATATAAAATTATAATTAACACTATGAGGTAAGCCCTAACTTGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATATATAAAATTATAATTAACACTATGAGGTAAGCCCTAACTTGA  999

seq1  ATTC  999
      ||||
seq2  ATTC  1003

seq1: chr9_38393523_38394605
seq2: B6Ng01-318J16.g_67_1147

seq1  GAATTCCAGACATTGGACAGTTGGAGATTGATTTTCCTTTTGATTGTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACATTGGACAGTTGGAGATTGATTTTCCTTTTGATTGTGAG  50

seq1  TGTGCCCTGATATTTTCCCCTCTTGATGGAAGTATTTTAGTGGAGCCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCTGATATTTTCCCCTCTTGATGGAAGTATTTTAGTGGAGCCCAC  100

seq1  AGTAAGAGACTTTTAATTGTAAAAAGACTTTGGATTTTAAAAGAGATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAGACTTTTAATTGTAAAAAGACTTTGGATTTTAAAAGAGATTAG  150

seq1  ATATTTTAAAGGGATTGAAATTTTAAGAATTTTCAAAGACTGTGGGACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAAAGGGATTGAAATTTTAAGAATTTTCAAAGACTGTGGGACTC  200

seq1  TTAAAGTTATTTAGAGTTCCATGCCAAGCATCTTCCCTCTGAACATCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTATTTAGAGTTCCATGCCAAGCATCTTCCCTCTGAACATCAGC  250

seq1  TCTATTCACGGCTAGTCATAAAGGCTCTATCACCTCCCAAAAGAGGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCACGGCTAGTCATAAAGGCTCTATCACCTCCCAAAAGAGGATGA  300

seq1  TGAGGAAACAGGAAAACACTTTTTGAAAGAAAGGTAGATTAATTGATTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAACAGGAAAACACTTTTTGAAAGAAAGGTAGATTAATTGATTGG  350

seq1  AAGGGACCAGCAACTTCTCACATTTTTCATACAAACTATTAACAATTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACCAGCAACTTCTCACATTTTTCATACAAACTATTAACAATTAAT  400

seq1  TATGGATACATAAAACTGGCTAGGAGGTAATAAGATTTTATAAAAAGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATACATAAAACTGGCTAGGAGGTAATAAGATTTTATAAAAAGAGT  450

seq1  TTTAGAGGTTTAATGTGATTTTATTTATACTTGCTCATCTGTTTTGTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGGTTTAATGTGATTTTATTTATACTTGCTCATCTGTTTTGTTTA  500

seq1  GGAAGTTATCAAAGATTATATTATTATTCCCTTTTTATTTAATGATAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTATCAAAGATTATATTATTATTCCCTTTTTATTTAATGATAAAA  550

seq1  GGGAATTCATGGGACTCTCACAAATTAGTCATTTTAATGAGTGAAGATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTCATGGGACTCTCACAAATTAGTCATTTTAATGAGTGAAGATGA  600

seq1  CCTCATGGAGCCATTTACATCAGAGCTTATCTCTGATGTATGTGCACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGGAGCCATTTACATCAGAGCTTATCTCTGATGTATGTGCACTGG  650

seq1  CATTTTACAAATAGTGAAAAATAATTTTGTTTTTATAAACAGTGTGTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTACAAATAGTGAAAAATAATTTTGTTTTTATAAACAGTGTGTTCT  700

seq1  TTCTTTTATATTTCACAATTTAAGATCATCTGTCCTTTGGCTGCTTGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTATATTTCACAATTTAAGATCATCTGTCCTTTGGCTGCTTGCCC  750

seq1  AGAGGTGATACAGCTGGATCCCTTGGTAGACAGTTATAGTTTTAGAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGATACAGCTGGATCCCTTGGTAGACAGTTATAGTTTTAGAAAAC  800

seq1  CCTCCATTTAGCTGTTCCACCTCATTTCCAATGAGATGCATGGGACTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATTTAGCTGTTCCACCTCATTTCCAATGAGATGCATGGGACTAGA  850

seq1  TGAATAAATTATTATTATATTTGATCCATGTATGCAGTGTACATGAGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAATTATTATTATATTTGATCCATGTATGCAGTGTACATGAGTAA  900

seq1  AGACAACATACCTCTGATTAATATGTGGACCAATTTTTGTCACTAAGAGA  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGACAACATACCTCTGATT-ATATGTGGACCAATTTTTGTCACTAAGAGA  949

seq1  ATCTATACC-TTTCTTGAAAACTAATAAAATAAGCATAAATGTAGTTGAA  999
      ||||||||| |||||||||||||||||||||||||||||||||||| |||
seq2  ATCTATACCTTTTCTTGAAAACTAATAAAATAAGCATAAATGTAGTGGAA  999

seq1  GGAACTTTAATGGCTAAATTATTGTGATTTCTTTCAATTTACAATTTCAC  1049
      |||||||||||||||||| |||||||||| |||    ||||| | |||||
seq2  GGAACTTTAATGGCTAAA-TATTGTGATTCCTT--CGTTTAC-AGTTCAC  1045

seq1  TGTTGCTTTGTGTACTAAACAGTAT--GATATGTTC  1083
      ||| |||||||||||||||||| ||  |||||||||
seq2  TGTGGCTTTGTGTACTAAACAGGATTGGATATGTTC  1081