BAC Information

Click to search

BAC

Clone NameB6Ng01-318L07
Chromosome9 (Build37)
Map Location 22,346,995 - 22,518,250
singlet/doubletdoublet
Overlap geneBbs9
Upstream geneAB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870, LOC100040805
Downstream geneBmper, LOC100040866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318L07.bB6Ng01-318L07.g
ACCGA108524GA108525
length4421,100
definitionB6Ng01-318L07.b B6Ng01-318L07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,517,803 - 22,518,250)(22,346,995 - 22,348,085)
sequence
tcaaaaaatatgttatatgtaacatacaagtatgaaatactgaggaaaaa
taggccactcttgcttaatgtctgtgcaaacctgcactaccagggactat
ggataacaaagcaacaactaaaacacaaaaacaaaacccacccagcagct
caaagcctagctcctgctaagaagcgaagcctcagttctgcaaatgttga
gtctgtccttttgtgatgtgtgtgctaccgaaagggtccttttccctctc
ccacctgtcagaacctgatccacttacaacttttcaagtggatattcagc
ttttctttagttgtgtctgccccctggtggctgcttaccccatctcagct
gtcaatcacccttgagaaggagaacagatactatatgccccagtacaggg
gaacgccagggccaaaaagggggagtgggtgggtaggggatt
gaattcctttcagcctctgggaggtaaccaagggaaacagcagcagccta
tattgttctgggattcttttggactgtcctgaccaacaacttgaaagggg
acttgtcaagtgagttcctagggtttacattagatagtcttgactgtcag
accaagtgggaaaacttccttcactcccctgtctctgcccgtgcctctgt
ctctgtgtgtgctgtatatatttttaggtaagtagaaaatagtgtggcta
ttccttgtgtctcttgcagacattctcattgttattttgcctctcccctc
acccctttctgtattgacctcactcttccctctctaactatagaccctgc
ccctaatttgccagtttcgcccttcaaatcacttgagtttcaggcgtata
gtatgtatagttgtcagtgtaaattgaatgaatatgctaatagcagttag
attataagatttatttcatttaaaagtttgtatacatgtgtttagctctg
tgcatatgagaggccagaggcatcccgtgcctctgaagctgaggttacaa
ctggttcaagttatccaagccgggaacctcgggtcctctgcacggaatct
taaccactggactgctctccccagccagcctgatttgtcttacgtcttta
aggttcttcctgatattctagagttctaatactagaaattttgttatacc
agatgtgatgttggtaaaaaagtaattacagcagatgaaggtgctgctgt
ttatgtatgtatgtcaccgcgtgcctaagccagcaccacttacctgatac
aatccagtagttattattttattagcaaataaaatttagctgaagcagat
ttaaaaaaaacgcataagaaaaggaaccaccaaacactgtgaactctatg
aaaaattatttaatgcatcttaatttgtgatttaaatatccttttttctt
tacattttaattctaacaggagaaaaacgagaagaaaattaactgcttcc
gagttttggcaagttccatccttccttagaatacgttccttgcccttctt
tgtgtttagcggagttctggtgtgcctgaggttgtggagctgtgttcaat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_22517803_22518250
seq2: B6Ng01-318L07.b_49_496 (reverse)

seq1  AATCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTAC  50

seq1  TGGGGCATATAGTATCTGTTCTCCTTCTCAAGGGTGATTGACAGCTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCATATAGTATCTGTTCTCCTTCTCAAGGGTGATTGACAGCTGAGA  100

seq1  TGGGGTAAGCAGCCACCAGGGGGCAGACACAACTAAAGAAAAGCTGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTAAGCAGCCACCAGGGGGCAGACACAACTAAAGAAAAGCTGAATA  150

seq1  TCCACTTGAAAAGTTGTAAGTGGATCAGGTTCTGACAGGTGGGAGAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTGAAAAGTTGTAAGTGGATCAGGTTCTGACAGGTGGGAGAGGGA  200

seq1  AAAGGACCCTTTCGGTAGCACACACATCACAAAAGGACAGACTCAACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACCCTTTCGGTAGCACACACATCACAAAAGGACAGACTCAACATT  250

seq1  TGCAGAACTGAGGCTTCGCTTCTTAGCAGGAGCTAGGCTTTGAGCTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAACTGAGGCTTCGCTTCTTAGCAGGAGCTAGGCTTTGAGCTGCTG  300

seq1  GGTGGGTTTTGTTTTTGTGTTTTAGTTGTTGCTTTGTTATCCATAGTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTTTTGTTTTTGTGTTTTAGTTGTTGCTTTGTTATCCATAGTCCC  350

seq1  TGGTAGTGCAGGTTTGCACAGACATTAAGCAAGAGTGGCCTATTTTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTGCAGGTTTGCACAGACATTAAGCAAGAGTGGCCTATTTTTCCT  400

seq1  CAGTATTTCATACTTGTATGTTACATATAACATATTTTTTGAGAATTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTTCATACTTGTATGTTACATATAACATATTTTTTGAGAATTC  448

seq1: chr9_22346995_22348085
seq2: B6Ng01-318L07.g_66_1165

seq1  GAATTCCTTTCAGCCTCTGGGAGGTAACCAAGGGAAACAGCAGCAGCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCAGCCTCTGGGAGGTAACCAAGGGAAACAGCAGCAGCCTA  50

seq1  TATTGTTCTGGGATTCTTTTGGACTGTCCTGACCAACAACTTGAAAGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTCTGGGATTCTTTTGGACTGTCCTGACCAACAACTTGAAAGGGG  100

seq1  ACTTGTCAAGTGAGTTCCTAGGGTTTACATTAGATAGTCTTGACTGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCAAGTGAGTTCCTAGGGTTTACATTAGATAGTCTTGACTGTCAG  150

seq1  ACCAAGTGGGAAAACTTCCTTCACTCCCCTGTCTCTGCCCGTGCCTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTGGGAAAACTTCCTTCACTCCCCTGTCTCTGCCCGTGCCTCTGT  200

seq1  CTCTGTGTGTGCTGTATATATTTTTAGGTAAGTAGAAAATAGTGTGGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTGTGCTGTATATATTTTTAGGTAAGTAGAAAATAGTGTGGCTA  250

seq1  TTCCTTGTGTCTCTTGCAGACATTCTCATTGTTATTTTGCCTCTCCCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGTGTCTCTTGCAGACATTCTCATTGTTATTTTGCCTCTCCCCTC  300

seq1  ACCCCTTTCTGTATTGACCTCACTCTTCCCTCTCTAACTATAGACCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTTCTGTATTGACCTCACTCTTCCCTCTCTAACTATAGACCCTGC  350

seq1  CCCTAATTTGCCAGTTTCGCCCTTCAAATCACTTGAGTTTCAGGCGTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATTTGCCAGTTTCGCCCTTCAAATCACTTGAGTTTCAGGCGTATA  400

seq1  GTATGTATAGTTGTCAGTGTAAATTGAATGAATATGCTAATAGCAGTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATAGTTGTCAGTGTAAATTGAATGAATATGCTAATAGCAGTTAG  450

seq1  ATTATAAGATTTATTTCATTTAAAAGTTTGTATACATGTGTTTAGCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAGATTTATTTCATTTAAAAGTTTGTATACATGTGTTTAGCTCTG  500

seq1  TGCATATGAGAGGCCAGAGGCATCCCGTGCCTCTGAAGCTGAGGTTACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATGAGAGGCCAGAGGCATCCCGTGCCTCTGAAGCTGAGGTTACAA  550

seq1  CTGGTTCAAGTTATCCAAGCCGGGAACCTCGGGTCCTCTGCACGGAATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCAAGTTATCCAAGCCGGGAACCTCGGGTCCTCTGCACGGAATCT  600

seq1  TAACCACTGGACTGCTCTCCCCAGCCAGCCTGATTTGTCTTACGTCTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACTGGACTGCTCTCCCCAGCCAGCCTGATTTGTCTTACGTCTTTA  650

seq1  AGGTTCTTCCTGATATTCTAGAGTTCTAATACTAGAAATTTTGTTATACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTTCCTGATATTCTAGAGTTCTAATACTAGAAATTTTGTTATACC  700

seq1  AGATGTGATGTTGGTAAAAAAGTAATTACAGCAGATGAAGGTGCTGCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGATGTTGGTAAAAAAGTAATTACAGCAGATGAAGGTGCTGCTGT  750

seq1  TTATGTATGTATGTCACCGCGTGCCTAAGCCAGCACCACTTACCTGATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTATGTATGTCACCGCGTGCCTAAGCCAGCACCACTTACCTGATAC  800

seq1  AATCCAGTAGTTATTATTTTATTAGCAAATAAAATTTAGCTGAAGCAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGTAGTTATTATTTTATTAGCAAATAAAATTTAGCTGAAGCAGAT  850

seq1  TT-AAAAAAACGCATAAG-AAAGGAACCACCAAACACTGTGAACTCTATG  898
      || ||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTAAAAAAAACGCATAAGAAAAGGAACCACCAAACACTGTGAACTCTATG  900

seq1  AAAAATTATTTAATGCATCTTAATTTGTGATTAAAATATCCTTTTTTCTT  948
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAAAATTATTTAATGCATCTTAATTTGTGATTTAAATATCCTTTTTTCTT  950

seq1  TACA-TTTAATTCTAACAGGAG-AAAACGAGAAGAAAATTAAACTGCTTC  996
      |||| ||||||||||||||||| ||||||||||||||||| |||||||||
seq2  TACATTTTAATTCTAACAGGAGAAAAACGAGAAGAAAATT-AACTGCTTC  999

seq1  CGAGTTTTGGCAAGTTCCATCTTCCTTTAGAATACGTTCCTTGCCCTTCC  1046
      ||||||||||||||||||||| | | ||||||||||||||||||||||| 
seq2  CGAGTTTTGGCAAGTTCCATCCTTCCTTAGAATACGTTCCTTGCCCTTCT  1049

seq1  TTGTG-TTAGC-GAG-TCT-GTG-GCTTGAGGTTGTGGAGCTGTG-TCAA  1090
      ||||| ||||| ||| ||| ||| || |||||||||||||||||| ||||
seq2  TTGTGTTTAGCGGAGTTCTGGTGTGCCTGAGGTTGTGGAGCTGTGTTCAA  1099

seq1  T  1091
      |
seq2  T  1100