BAC Information

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BAC

Clone NameB6Ng01-318M09
Chromosome9 (Build37)
Map Location 64,825,990 - 64,932,881
singlet/doubletdoublet
Overlap gene2010321M09Rik, Ptplad1, Dpp8
Upstream geneSmad6, 2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1, Uchl4, Tipin, Dis3l, Megf11, Rab11a, AI115600, F730015K02Rik, Slc24a1
Downstream geneNope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318M09.bB6Ng01-318M09.g
ACCGA108575GA108576
length1,074674
definitionB6Ng01-318M09.b B6Ng01-318M09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,825,990 - 64,827,061)(64,932,333 - 64,932,881)
sequence
gaattcagccaatcagattgctggcaaaatacccaacttctgtgtcctgc
tccacggcagcctgaaggtggaaggaatggtggcacttgtccaactaggg
taggaagggttcatttgtattgctgacccagagagagctacacagtggag
cgtttcacagacctaaggaaagacatggaaagatcctggtcactcttccc
tttcctgccatacccttcccacctccattaccttccagtccttagttatc
ccacaaagttagtgggaggtgacctttttaactgcatcgatttaatgtta
tatatcttctcttttaagttgttagtcacatgtttactttagagagagaa
ttttgttgtgacccaaactgttcacacatacatgatccacatgcctcagg
ctctaaagtgctgggattactgctataccaaaaggttttcctttttaaat
cttgcatgggtgctgagaagcaaaccttggttctctgcaagatggatagt
gcctctcatagtgacctctgtttctgggaacccacactacctactgctgc
ttgttagctcatgccaccccaacactgcacagatgaggagactgaagctt
tgagagacaggaaatggcccaagatcacaaagatagcaaacccagagcca
gagttcttaacctgcatgcttagtccagaacgcatgcggctgctctgagt
tccttccctgtgtggaaagaaccagctttcatattgtctgtagtcgtgaa
gcctgcaaagctgtctgcttctcttcctgtaacacctggtactggaaaag
aggagggggccttctggccatgacccggttttgtcggatataaaagatca
aggagttaagattaatcataggaggcatatctccatttctgcttgaatga
aaattcccaaaagaatacagtagttttttatttattttatttttgtgtgt
atacacctgtgtgtgtgttcaggtgagagcaggtgtccatggagaccaag
ggctggaaactgggatgacaggcgataatgacctctgggttcctcttgca
agatggacaaggtgctttggagag
gaattctgggaatttttcagagggtacataaatgttagtgtgtgtgtgtg
tgtgtatatatatatatatatatgggttgttggttgctgttggtcaaagt
ttgttaagtagtcatgcgaaaggaagaaacaagaaaaagaagaaattaga
tatctgatgttgaagatcaagcttgccccaaggaacacaatgcctctaat
cagcgggaagtagtctaatgatgacatcaccacttttccaatccctgact
ttattcagggatctctttcctctctatcctgttatcgctcctatctaatg
ttaagatggttgaaagggtggagaagggtggaggaaagaagccacaaagg
agccaaagacagcaacatgttcagaacctgtagaagctcctatcaattgt
cagtgatataaatcagaagcccagcaggtcaggaggtacctgttagtccc
tggtgcctaggctgaggcttctgggaacctccagcaggtactgagcagtg
ctctgcacacctcccactcagtgtttgtactgcagctcccacatgatctg
cacccaaccccaacatctcccttatttgcaagcacatgaccttgggtatc
agtcactccgaagttgagtcatcaaagcaaggctgtacagatggggggag
ggtgataaaagatcgtgagtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_64825990_64827061
seq2: B6Ng01-318M09.b_44_1117

seq1  GAATTCAGCCAATCAGATTGCTGGCAAAATACCCAACTTCTGTGTCCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCAATCAGATTGCTGGCAAAATACCCAACTTCTGTGTCCTGC  50

seq1  TCCACGGCAGCCTGAAGGTGGAAGGAATGGTGGCACTTGTCCAACTAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGGCAGCCTGAAGGTGGAAGGAATGGTGGCACTTGTCCAACTAGGG  100

seq1  TAGGAAGGGTTCATTTGTATTGCTGACCCAGAGAGAGCTACACAGTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGGGTTCATTTGTATTGCTGACCCAGAGAGAGCTACACAGTGGAG  150

seq1  CGTTTCACAGACCTAAGGAAAGACATGGAAAGATCCTGGTCACTCTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCACAGACCTAAGGAAAGACATGGAAAGATCCTGGTCACTCTTCCC  200

seq1  TTTCCTGCCATACCCTTCCCACCTCCATTACCTTCCAGTCCTTAGTTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGCCATACCCTTCCCACCTCCATTACCTTCCAGTCCTTAGTTATC  250

seq1  CCACAAAGTTAGTGGGAGGTGACCTTTTTAACTGCATCGATTTAATGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAGTTAGTGGGAGGTGACCTTTTTAACTGCATCGATTTAATGTTA  300

seq1  TATATCTTCTCTTTTAAGTTGTTAGTCACATGTTTACTTTAGAGAGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTTCTCTTTTAAGTTGTTAGTCACATGTTTACTTTAGAGAGAGAA  350

seq1  TTTTGTTGTGACCCAAACTGTTCACACATACATGATCCACATGCCTCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGTGACCCAAACTGTTCACACATACATGATCCACATGCCTCAGG  400

seq1  CTCTAAAGTGCTGGGATTACTGCTATACCAAAAGGTTTTCCTTTTTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAGTGCTGGGATTACTGCTATACCAAAAGGTTTTCCTTTTTAAAT  450

seq1  CTTGCATGGGTGCTGAGAAGCAAACCTTGGTTCTCTGCAAGATGGATAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATGGGTGCTGAGAAGCAAACCTTGGTTCTCTGCAAGATGGATAGT  500

seq1  GCCTCTCATAGTGACCTCTGTTTCTGGGAACCCACACTACCTACTGCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCATAGTGACCTCTGTTTCTGGGAACCCACACTACCTACTGCTGC  550

seq1  TTGTTAGCTCATGCCACCCCAACACTGCACAGATGAGGAGACTGAAGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGCTCATGCCACCCCAACACTGCACAGATGAGGAGACTGAAGCTT  600

seq1  TGAGAGACAGGAAATGGCCCAAGATCACAAAGATAGCAAACCCAGAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGACAGGAAATGGCCCAAGATCACAAAGATAGCAAACCCAGAGCCA  650

seq1  GAGTTCTTAACCTGCATGCTTAGTCCAGAACGCATGCGGCTGCTCTGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTTAACCTGCATGCTTAGTCCAGAACGCATGCGGCTGCTCTGAGT  700

seq1  TCCTTCCCTGTGTGGAAAGAACCAGCTTTCATATTGTCTGTAGTCGTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCTGTGTGGAAAGAACCAGCTTTCATATTGTCTGTAGTCGTGAA  750

seq1  GCCTGCAAAGCTGTCTGCTTCTCTTCCTGTAACACCTGGTACTGGAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCAAAGCTGTCTGCTTCTCTTCCTGTAACACCTGGTACTGGAAAAG  800

seq1  AGGAGGGGGCCTTCTGGCCATGACCCGGTTTTGTCGGATATAAAAGATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGGGCCTTCTGGCCATGACCCGGTTTTGTCGGATATAAAAGATCA  850

seq1  AGGAGTTAAGATTAATCATAGGAGGCATATCTCCATTTCTGCTTGAATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTAAGATTAATCATAGGAGGCATATCTCCATTTCTGCTTGAATGA  900

seq1  AAATTCCCAAAAGAATACAGTAGGTTTTTTATTTATTTTATTTTTGTGTG  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAATTCCCAAAAGAATACAGTA-GTTTTTTATTTATTTTATTTTTGTGTG  949

seq1  TATACACCTGTGTGTGTGTTCAGGTGAGAGCAGGGTGTCCATGGAGACCA  1000
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TATACACCTGTGTGTGTGTTCAGGTGAGAGCA-GGTGTCCATGGAGACCA  998

seq1  AGGGCTGG-AACT-GGATGACAGGCGAT-ATGACCTTCTGG--TCCTC-T  1044
      |||||||| |||| |||||||||||||| |||||| |||||  ||||| |
seq2  AGGGCTGGAAACTGGGATGACAGGCGATAATGACC-TCTGGGTTCCTCTT  1047

seq1  GCAAGATGGAC-AGGTGCCTTTGAGAGAG  1072
      ||||||||||| |||||| || |||||  
seq2  GCAAGATGGACAAGGTGCTTTGGAGAG--  1074

seq1: chr9_64932333_64932881
seq2: B6Ng01-318M09.g_190_741 (reverse)

seq1  CCCCACACACGATCCTTT-TC-CCCT-CCCCCATCTGTACAGCCTTGCTT  47
      |||||| ||||||| ||| || |||| |||||||||||||||||||||||
seq2  CCCCACTCACGATCTTTTATCACCCTCCCCCCATCTGTACAGCCTTGCTT  50

seq1  TGATGACTCAACTTCGGAGTGACTGATACCCAAGGTCATGTGCTTGCAAA  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACTCAACTTCGGAGTGACTGATACCCAAGGTCATGTGCTTGCAAA  100

seq1  TAAGGGAGATGTTGGGGTTGGGTGCAGATCATGTGGGAGCTGCAGTACAA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGAGATGTTGGGGTTGGGTGCAGATCATGTGGGAGCTGCAGTACAA  150

seq1  ACACTGAGTGGGAGGTGTGCAGAGCACTGCTCAGTACCTGCTGGAGGTTC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAGTGGGAGGTGTGCAGAGCACTGCTCAGTACCTGCTGGAGGTTC  200

seq1  CCAGAAGCCTCAGCCTAGGCACCAGGGACTAACAGGTACCTCCTGACCTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCCTCAGCCTAGGCACCAGGGACTAACAGGTACCTCCTGACCTG  250

seq1  CTGGGCTTCTGATTTATATCACTGACAATTGATAGGAGCTTCTACAGGTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTTCTGATTTATATCACTGACAATTGATAGGAGCTTCTACAGGTT  300

seq1  CTGAACATGTTGCTGTCTTTGGCTCCTTTGTGGCTTCTTTCCTCCACCCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACATGTTGCTGTCTTTGGCTCCTTTGTGGCTTCTTTCCTCCACCCT  350

seq1  TCTCCACCCTTTCAACCATCTTAACATTAGATAGGAGCGATAACAGGATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACCCTTTCAACCATCTTAACATTAGATAGGAGCGATAACAGGATA  400

seq1  GAGAGGAAAGAGATCCCTGAATAAAGTCAGGGATTGGAAAAGTGGTGATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAAAGAGATCCCTGAATAAAGTCAGGGATTGGAAAAGTGGTGATG  450

seq1  TCATCATTAGACTACTTCCCGCTGATTAGAGGCATTGTGTTCCTTGGGGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATTAGACTACTTCCCGCTGATTAGAGGCATTGTGTTCCTTGGGGC  500

seq1  AAGCTTGATCTTCAACATCAGATATCTAATTTCTTCTTTTTCTTGTTTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGATCTTCAACATCAGATATCTAATTTCTTCTTTTTCTTGTTTCT  550

seq1  TC  549
      ||
seq2  TC  552