BAC Information

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BAC

Clone NameB6Ng01-319B12
Chromosome9 (Build37)
Map Location 59,720,589 - 59,792,507
singlet/doubletdoublet
Overlap geneMyo9a, Nr2e3
Upstream geneNeo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, EG665385, LOC100040361
Downstream geneEG665389, Thsd4, LOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319B12.bB6Ng01-319B12.g
ACCGA108815GA108816
length3281,107
definitionB6Ng01-319B12.b B6Ng01-319B12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,792,180 - 59,792,507)(59,720,589 - 59,721,708)
sequence
actacgccagtggggataagctgagcttccacccttcacttccagagcaa
aagagcatatgcagccacatggggtccatgtgctgctggggacagagcct
agggtctggtgccggctgagcaagaagggaaggtggagcagggcaggggt
ggggcgggggtgactgcttacatgctgctcataagagaaagggaggtttt
agctgggcaaagccactcactaggtcagagagtaaatggctggtttctca
tagttctctaggtgcagtcaagccagcagctgcctcgtggagctcagcct
tcttggtgtgtgggtgggtgtgggtgtg
gaattctttttagtttttataattagccacagaagcattttaactcatag
aggtcatgagaagctgttttctggtttaggttgtttgtttgttttaaatt
ctgatgtttgtgatcaaacctgggacatcatgcatgtttatcaagcaagc
accaggcttacacagctggcactcactgagtcatctccccagactccatt
tatgagagttaaggaaacgatttctaatggaaaacaattaacttaacagc
tagtgttatatgttattgtctattttaaactagtcagatgctagtagtta
agtcataactcctaaggagtttgaagtctaaggatgaattttaaaactca
taatactaaattaattagtgccatgaaaatctaggtactgctcaaatttt
caccagattctgacagtctatttcaatatagaaatttaatggtaaaatag
tcttgccactgttttttttttagacaaaattaaactttcataacccagtc
ttatagtatttgtattgtttggcgcatacttcattttgcttattaacaat
tcttattctgccattgttagcattagcctcacattttaaaggtaagatag
tggttagaaacttagaagagttcagaaagtgattttttttctaaccaata
ggaacatcccaaagtaaaacaagatcttcattactatcatattttataat
tatgtgaaaagcctgtttaagacaagaatcctaaagatggaagggattta
gaaattttattttcttattattgaattgactttggttcttttttaaaaat
tatttattttcattttcttttcattggtgtcttgtctacatgtaggtgta
tgtgagggtgtcagattgtgaagttactgatagttgtgagctgccatgtg
ggtgctgggatttgaacctgagtcttctggaagagcagacagtgcttctt
aaccactgagccattctccagcccttgacttttgtttttatctatttgct
gctactttctaaatgtatgcacataggtgaatatatcagtgatatcacag
gagctctgtgtgatcatcttgcatgtgatcttgattatacttgattggat
accgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_59792180_59792507
seq2: B6Ng01-319B12.b_52_379 (reverse)

seq1  CACACCCACACCCACCCACACACCAAGAAGGCTGAGCTCCACGAGGCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCACACCCACCCACACACCAAGAAGGCTGAGCTCCACGAGGCAGC  50

seq1  TGCTGGCTTGACTGCACCTAGAGAACTATGAGAAACCAGCCATTTACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTTGACTGCACCTAGAGAACTATGAGAAACCAGCCATTTACTCT  100

seq1  CTGACCTAGTGAGTGGCTTTGCCCAGCTAAAACCTCCCTTTCTCTTATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTAGTGAGTGGCTTTGCCCAGCTAAAACCTCCCTTTCTCTTATGA  150

seq1  GCAGCATGTAAGCAGTCACCCCCGCCCCACCCCTGCCCTGCTCCACCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATGTAAGCAGTCACCCCCGCCCCACCCCTGCCCTGCTCCACCTTC  200

seq1  CCTTCTTGCTCAGCCGGCACCAGACCCTAGGCTCTGTCCCCAGCAGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTGCTCAGCCGGCACCAGACCCTAGGCTCTGTCCCCAGCAGCACA  250

seq1  TGGACCCCATGTGGCTGCATATGCTCTTTTGCTCTGGAAGTGAAGGGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCCATGTGGCTGCATATGCTCTTTTGCTCTGGAAGTGAAGGGTGG  300

seq1  AAGCTCAGCTTATCCCCACTGGCGTAGT  328
      ||||||||||||||||||||||||||||
seq2  AAGCTCAGCTTATCCCCACTGGCGTAGT  328

seq1: chr9_59720589_59721708
seq2: B6Ng01-319B12.g_68_1174

seq1  GAATTCTTTTTAGTTTTTATAATTAGCCACAGAAGCATTTTAACTCATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTAGTTTTTATAATTAGCCACAGAAGCATTTTAACTCATAG  50

seq1  AGGTCATGAGAAGCTGTTTTCTGGTTTAGGTTGTTTGTTTGTTTTAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATGAGAAGCTGTTTTCTGGTTTAGGTTGTTTGTTTGTTTTAAATT  100

seq1  CTGATGTTTGTGATCAAACCTGGGACATCATGCATGTTTATCAAGCAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTTTGTGATCAAACCTGGGACATCATGCATGTTTATCAAGCAAGC  150

seq1  ACCAGGCTTACACAGCTGGCACTCACTGAGTCATCTCCCCAGACTCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTTACACAGCTGGCACTCACTGAGTCATCTCCCCAGACTCCATT  200

seq1  TATGAGAGTTAAGGAAACGATTTCTAATGGAAAACAATTAACTTAACAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAGTTAAGGAAACGATTTCTAATGGAAAACAATTAACTTAACAGC  250

seq1  TAGTGTTATATGTTATTGTCTATTTTAAACTAGTCAGATGCTAGTAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTATATGTTATTGTCTATTTTAAACTAGTCAGATGCTAGTAGTTA  300

seq1  AGTCATAACTCCTAAGGAGTTTGAAGTCTAAGGATGAATTTTAAAACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATAACTCCTAAGGAGTTTGAAGTCTAAGGATGAATTTTAAAACTCA  350

seq1  TAATACTAAATTAATTAGTGCCATGAAAATCTAGGTACTGCTCAAATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTAAATTAATTAGTGCCATGAAAATCTAGGTACTGCTCAAATTTT  400

seq1  CACCAGATTCTGACAGTCTATTTCAATATAGAAATTTAATGGTAAAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGATTCTGACAGTCTATTTCAATATAGAAATTTAATGGTAAAATAG  450

seq1  TCTTGCCACTGTTTTTTTTTTAGACAAAATTAAACTTTCATAACCCAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCACTGTTTTTTTTTTAGACAAAATTAAACTTTCATAACCCAGTC  500

seq1  TTATAGTATTTGTATTGTTTGGCGCATACTTCATTTTGCTTATTAACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTATTTGTATTGTTTGGCGCATACTTCATTTTGCTTATTAACAAT  550

seq1  TCTTATTCTGCCATTGTTAGCATTAGCCTCACATTTTAAAGGTAAGATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTCTGCCATTGTTAGCATTAGCCTCACATTTTAAAGGTAAGATAG  600

seq1  TGGTTAGAAACTTAGAAGAGTTCAGAAAGTGATTTTTTTTCTAACCAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAGAAACTTAGAAGAGTTCAGAAAGTGATTTTTTTTCTAACCAATA  650

seq1  GGAACATCCCAAAGTAAAACAAGATCTTCATTACTATCATATTTTATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATCCCAAAGTAAAACAAGATCTTCATTACTATCATATTTTATAAT  700

seq1  TATGTGAAAAGCCTGTTTAAGACAAGAATCCTAAAGATGGAAGGGATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAAAAGCCTGTTTAAGACAAGAATCCTAAAGATGGAAGGGATTTA  750

seq1  GAAATTTTATTTTCTTATTATTGAATTGACTTTGGTTCTTTTTTAAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTATTTTCTTATTATTGAATTGACTTTGGTTCTTTTTTAAAAAT  800

seq1  TATTTATTTTCATTTTCTTTTCATTGGTGTCTTGTCTACATGTAGGTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTTCATTTTCTTTTCATTGGTGTCTTGTCTACATGTAGGTGTA  850

seq1  TGTGAGGGTGTCAGATTGTGAAGTTACTGATAGTTGTGAGCTGCCATGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGGTGTCAGATTGTGAAGTTACTGATAGTTGTGAGCTGCCATGTG  900

seq1  GGTGCTGGGATTTGAACCTGAGTCTTCTGGAAGAGCAGACAGTGC-TCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGTGCTGGGATTTGAACCTGAGTCTTCTGGAAGAGCAGACAGTGCTTCTT  950

seq1  AACCACTGAGCCATTCCTCCAGCCCCTTGACTTTTGTTTTTATCTAATTT  999
      ||||||||||||||| |||||| |||||||||||||||||||||||  ||
seq2  AACCACTGAGCCATT-CTCCAG-CCCTTGACTTTTGTTTTTATCTA--TT  996

seq1  TGCTGCTACCTTTCTTAAATGTATGCCACCATAGTGGAATATATCCAGTG  1049
      |||||||| ||||| |||||||||||   |||||  |||||||| |||||
seq2  TGCTGCTA-CTTTC-TAAATGTATGC--ACATAGGTGAATATAT-CAGTG  1041

seq1  ATTATCACAGGAGCCTCTGTGAATTCATCTTGCATGTAGATTCTTGATTA  1099
      | ||||||||||| |||||||   ||||||||||||| || |||||||||
seq2  A-TATCACAGGAG-CTCTGTGTGATCATCTTGCATGT-GA-TCTTGATTA  1087

seq1  TACTGTTGATTGGATA-CGAAA  1120
      |||  ||||||||||| |||||
seq2  TAC--TTGATTGGATACCGAAA  1107