BAC Information

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BAC

Clone NameB6Ng01-319M13
Chromosome9 (Build37)
Map Location 22,935,991 - 23,053,552
singlet/doubletdoublet
Overlap geneBmper
Upstream genePigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805
Downstream geneLOC100040866, LOC100040878, LOC100040893, Npsr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319M13.bB6Ng01-319M13.g
ACCGA109329GA109330
length1,1461,063
definitionB6Ng01-319M13.b B6Ng01-319M13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,935,991 - 22,937,133)(23,052,476 - 23,053,552)
sequence
gaattcacggtgaagtgatatgcatggccagtaagaatctgaaatgtgct
tgttcttcaaataaatgaaatgcaactttccacaaattatctgcaaggaa
tacaacttactttatgcagtccaccatctttcagattttttttaaaagaa
cattccaataaaattttaaaaagataaagtctgaaaattgtgtaaaattt
atttttattacctttgtcatctgcctgagagtgatcttttaagaatccaa
tgcattcattggaaaaatatctaccaataaacacattttaaggggaaatg
tagtctgcagatcaggatgtaccatgtggtcccattttagagcaatatgt
ttggaaacacaaaaacaagtagaagaaaatacaggtgtacatgaaataaa
atgttagcagggcaaagctaatagttattatttattttcttatctttttt
atctactttgtaatgttttgaaccatgaattgtctttacgtataacacac
ttaggaatgtatatttcagattgaggtggaatcacagagcttgtacagtg
gccgtgctcttggcccttgggcattccacagatgggagagtgttccttcc
ctcacttatggaagcacccctacaagtgtgggacctcggtttttatacat
ggggtttcacgtaactggaagtggttagaaggaggcagaaccgccagtgg
tcctggtactaaagcaggggatggcctggatcatagatgatgccaggatg
aggtgagagcttcggtgcctccatcattcaaaggctcatgattagtaggt
atcaaggggcaggagaaagactgaagcagataggctaccttactttctcc
tttgcttccttcctcacctgcctacttgcctggggttgaggttacattga
tttcctcttgttccctggattcatcatgatctctctttctgttctcttat
ggagtgaccataacactttttctttaaaaacctgtatatatgtgaatgtg
ttttttgtttttaatcccagtggtgggaatatgagaactgttttcaaggt
tgtcccagcagctagtatgatttgtcttcgtgctctagaagccttgtaat
tttgccagccttgccgacagcttattgtttgaaattcttggactct
gaattccctgcagattagaagccgtggaaatgggtgaggatcatgggaca
ctctgaccctgcagacgattcctaaaggccttatctaaagcacacgtggt
ggtgtttcacatatgcagtctcaaaactgctcagacaggaattcattctt
aggaatatggatggtttttgccaggttttctgaggaaggagaccacgaaa
aaccgatccaacatcaacgactatattctcattagaatttctagtctccc
catgcatgaagttaaatggctcaacttctccttgaagtaccccattctaa
cccaactcaagcccccaaagagccaaaggggatgttatggtacttttaaa
cagaagtcccagtttctcagaggcgatattatactactcctcataaacag
aagaataatacttggtgtttacatagcacatttcttctgaagaactctgc
agacattatttcattaatcctcataggttccttaagtttttcagaggaag
aaacagtccatagtgaacaaaagtgtctcaggcccctcaaagaactggca
agcagtttagttgggaactcagtgtgattcccaggcctggattaaggtcc
aggcaagaaggttagttgctaagacacagcattaaaatttataggtatgt
cgtattagaattaggttagctccaacacaaccttgagattttagaaatag
attaacgtgtagtagagctactctgggaattttccaggaaaactaaccac
ctgggccataggagtaatatctttagcctgtgctagtgtaagacaaccac
ggaagggcttgcccaggacttggaaagagaggagacctcacagtacatgt
caggccttagacgttcttgaatgcagagatataagcaaatgttgaagaaa
gaaaggtttatgtggggcctaaagacacaaggaagttggcagtttgaact
gtcagaagtatgattctctgtgatcaggagatcttcttcttcttcttctt
ctttcttttttttttctagattatttattgattatatgtagtacactgta
ggctgtcttcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_22935991_22937133
seq2: B6Ng01-319M13.b_47_1192

seq1  GAATTCACGGTGAAGTGATATGCATGGCCAGTAAGAATCTGAAATGTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGGTGAAGTGATATGCATGGCCAGTAAGAATCTGAAATGTGCT  50

seq1  TGTTCTTCAAATAAATGAAATGCAACTTTCCACAAATTATCTGCAAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTCAAATAAATGAAATGCAACTTTCCACAAATTATCTGCAAGGAA  100

seq1  TACAACTTACTTTATGCAGTCCACCATCTTTCAGATTTTTTTTAAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTTACTTTATGCAGTCCACCATCTTTCAGATTTTTTTTAAAAGAA  150

seq1  CATTCCAATAAAATTTTAAAAAGATAAAGTCTGAAAATTGTGTAAAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAATAAAATTTTAAAAAGATAAAGTCTGAAAATTGTGTAAAATTT  200

seq1  ATTTTTATTACCTTTGTCATCTGCCTGAGAGTGATCTTTTAAGAATCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTACCTTTGTCATCTGCCTGAGAGTGATCTTTTAAGAATCCAA  250

seq1  TGCATTCATTGGAAAAATATCTACCAATAAACACATTTTAAGGGGAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCATTGGAAAAATATCTACCAATAAACACATTTTAAGGGGAAATG  300

seq1  TAGTCTGCAGATCAGGATGTACCATGTGGTCCCATTTTAGAGCAATATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGCAGATCAGGATGTACCATGTGGTCCCATTTTAGAGCAATATGT  350

seq1  TTGGAAACACAAAAACAAGTAGAAGAAAATACAGGTGTACATGAAATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAACACAAAAACAAGTAGAAGAAAATACAGGTGTACATGAAATAAA  400

seq1  ATGTTAGCAGGGCAAAGCTAATAGTTATTATTTATTTTCTTATCTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGCAGGGCAAAGCTAATAGTTATTATTTATTTTCTTATCTTTTTT  450

seq1  ATCTACTTTGTAATGTTTTGAACCATGAATTGTCTTTACGTATAACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTTTGTAATGTTTTGAACCATGAATTGTCTTTACGTATAACACAC  500

seq1  TTAGGAATGTATATTTCAGATTGAGGTGGAATCACAGAGCTTGTACAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAATGTATATTTCAGATTGAGGTGGAATCACAGAGCTTGTACAGTG  550

seq1  GCCGTGCTCTTGGCCCTTGGGCATTCCACAGATGGGAGAGTGTTCCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGCTCTTGGCCCTTGGGCATTCCACAGATGGGAGAGTGTTCCTTCC  600

seq1  CTCACTTATGGAAGCACCCCTACAAGTGTGGGACCTCGGTTTTTATACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTATGGAAGCACCCCTACAAGTGTGGGACCTCGGTTTTTATACAT  650

seq1  GGGGTTTCACGTAACTGGAAGTGGTTAGAAGGAGGCAGAACCGCCAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTTCACGTAACTGGAAGTGGTTAGAAGGAGGCAGAACCGCCAGTGG  700

seq1  TCCTGGTACTAAAGCAGGGGATGGCCTGGATCATAGATGATGCCAGGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTACTAAAGCAGGGGATGGCCTGGATCATAGATGATGCCAGGATG  750

seq1  AGGTGAGAGCTTCGGTGCCTCCATCATTC-AAGGCTCATGATTAGTAGGT  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGGTGAGAGCTTCGGTGCCTCCATCATTCAAAGGCTCATGATTAGTAGGT  800

seq1  ATCAAGGGGCAGGAGAAAGACTGAAGCAGATAGGCTACCTTACTTTCTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGGGCAGGAGAAAGACTGAAGCAGATAGGCTACCTTACTTTCTCC  850

seq1  TTTGCTTCCTTCCTCACCTGCCTACTTGCCTGGGGTTGAGGTTACATTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCCTTCCTCACCTGCCTACTTGCCTGGGGTTGAGGTTACATTGA  900

seq1  TTTCCTCTTGGTTCCCTGGATTCATCATGATCTCTCTTTCTTGTTCTCTT  949
      ||||||||| |||||||||||||||||||||||||||||| ||||||| |
seq2  TTTCCTCTT-GTTCCCTGGATTCATCATGATCTCTCTTTC-TGTTCTC-T  947

seq1  TATGGAGTGACCATAACAC-TTTTCTTTAAAAACCTGTTATATTATGTGA  998
      ||||||||||||||||||| ||||||||||||||||| |||| |||||||
seq2  TATGGAGTGACCATAACACTTTTTCTTTAAAAACCTG-TATA-TATGTGA  995

seq1  ATGTGTTTTT--GTTTTAATCCCAGGTGTGGG-ATATGAG-ACTGTTT--  1042
      ||||||||||   ||||||||||||  ||||| ||||||| |||||||  
seq2  ATGTGTTTTTTGTTTTTAATCCCAGTGGTGGGAATATGAGAACTGTTTTC  1045

seq1  CAGGTTGTCCACAGCAGCTAAGTATGATTTGTC-TCGTGCTCTAGGAAGG  1091
       ||||||||| |||||||| ||||||||||||| |||||||||| |||| 
seq2  AAGGTTGTCC-CAGCAGCT-AGTATGATTTGTCTTCGTGCTCTA-GAAGC  1092

seq1  CTGTGAATTTTGCCAGC--TGCCGACAGTTTA-TGTTTGGAATTCTGGGG  1138
      ||   ||||||||||||  ||||||||| ||| |||||| ||||||  ||
seq2  CTTGTAATTTTGCCAGCCTTGCCGACAGCTTATTGTTTGAAATTCT-TGG  1141

seq1  ACTCT  1143
      |||||
seq2  ACTCT  1146

seq1: chr9_23052476_23053552
seq2: B6Ng01-319M13.g_68_1130 (reverse)

seq1  TCTGAAGACAG-CTACAGTGTACTTACATATAATCAATAAATAAATCTAA  49
      ||||||||||| ||||||||||| |||||||||||||||||| |||||  
seq2  TCTGAAGACAGCCTACAGTGTAC-TACATATAATCAATAAAT-AATCT--  46

seq1  GAAAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAATCTCCT  99
       | ||||||||||||||| |||||   |||||   |||||   |||||||
seq2  -AGAAAAAAAAAAGAAAG-AAGAA--GAAGAA--GAAGAA--GATCTCCT  88

seq1  GATCACAGAGGAATCATTACTTCTGACAGTTCAAACTGCCAACTTCCTTT  149
      ||||||||| |||||| |||||||||||||||||||||||||||||| ||
seq2  GATCACAGA-GAATCA-TACTTCTGACAGTTCAAACTGCCAACTTCC-TT  135

seq1  GTGTCTTTAGGCCCCACATAAACCTTTCTTTCTTCAACATTTGCTTATAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTTAGGCCCCACATAAACCTTTCTTTCTTCAACATTTGCTTATAT  185

seq1  CTCTGCATTCAAGAACGTCTAAGGCCTGACATGTACTGTGAGGTCTCCTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCATTCAAGAACGTCTAAGGCCTGACATGTACTGTGAGGTCTCCTC  235

seq1  TCTTTCCAAGTCCTGGGCAAGCCCTTCCGTGGTTGTCTTACACTAGCACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCAAGTCCTGGGCAAGCCCTTCCGTGGTTGTCTTACACTAGCACA  285

seq1  GGCTAAAGATATTACTCCTATGGCCCAGGTGGTTAGTTTTCCTGGAAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAGATATTACTCCTATGGCCCAGGTGGTTAGTTTTCCTGGAAAAT  335

seq1  TCCCAGAGTAGCTCTACTACACGTTAATCTATTTCTAAAATCTCAAGGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAGTAGCTCTACTACACGTTAATCTATTTCTAAAATCTCAAGGTT  385

seq1  GTGTTGGAGCTAACCTAATTCTAATACGACATACCTATAAATTTTAATGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGAGCTAACCTAATTCTAATACGACATACCTATAAATTTTAATGC  435

seq1  TGTGTCTTAGCAACTAACCTTCTTGCCTGGACCTTAATCCAGGCCTGGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTTAGCAACTAACCTTCTTGCCTGGACCTTAATCCAGGCCTGGGA  485

seq1  ATCACACTGAGTTCCCAACTAAACTGCTTGCCAGTTCTTTGAGGGGCCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACTGAGTTCCCAACTAAACTGCTTGCCAGTTCTTTGAGGGGCCTG  535

seq1  AGACACTTTTGTTCACTATGGACTGTTTCTTCCTCTGAAAAACTTAAGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTTTTGTTCACTATGGACTGTTTCTTCCTCTGAAAAACTTAAGGA  585

seq1  ACCTATGAGGATTAATGAAATAATGTCTGCAGAGTTCTTCAGAAGAAATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGAGGATTAATGAAATAATGTCTGCAGAGTTCTTCAGAAGAAATG  635

seq1  TGCTATGTAAACACCAAGTATTATTCTTCTGTTTATGAGGAGTAGTATAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGTAAACACCAAGTATTATTCTTCTGTTTATGAGGAGTAGTATAA  685

seq1  TATCGCCTCTGAGAAACTGGGACTTCTGTTTAAAAGTACCATAACATCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGCCTCTGAGAAACTGGGACTTCTGTTTAAAAGTACCATAACATCCC  735

seq1  CTTTGGCTCTTTGGGGGCTTGAGTTGGGTTAGAATGGGGTACTTCAAGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCTCTTTGGGGGCTTGAGTTGGGTTAGAATGGGGTACTTCAAGGA  785

seq1  GAAGTTGAGCCATTTAACTTCATGCATGGGGAGACTAGAAATTCTAATGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGAGCCATTTAACTTCATGCATGGGGAGACTAGAAATTCTAATGA  835

seq1  GAATATAGTCGTTGATGTTGGATCGGTTTTTCGTGGTCTCCTTCCTCAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAGTCGTTGATGTTGGATCGGTTTTTCGTGGTCTCCTTCCTCAGA  885

seq1  AAACCTGGCAAAAACCATCCATATTCCTAAGAATGAATTCCTGTCTGAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGGCAAAAACCATCCATATTCCTAAGAATGAATTCCTGTCTGAGC  935

seq1  AGTTTTGAGACTGCATATGTGAAACACCACCACGTGTGCTTTAGATAAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGAGACTGCATATGTGAAACACCACCACGTGTGCTTTAGATAAGG  985

seq1  CCTTTAGGAATCGTCTGCAGGGTCAGAGTGTCCCATGATCCTCACCCATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGGAATCGTCTGCAGGGTCAGAGTGTCCCATGATCCTCACCCATT  1035

seq1  TCCACGGCTTCTAATCTGCAGGGAATTC  1077
      ||||||||||||||||||||||||||||
seq2  TCCACGGCTTCTAATCTGCAGGGAATTC  1063