BAC Information

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BAC

Clone NameB6Ng01-322K17
Chromosome9 (Build37)
Map Location 59,953,958 - 60,090,952
singlet/doubletdoublet
Overlap geneThsd4
Upstream geneEG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389
Downstream geneLOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143, A430102L10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322K17.bB6Ng01-322K17.g
ACCGA111453GA111454
length1,1501,104
definitionB6Ng01-322K17.b B6Ng01-322K17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,953,958 - 59,955,125)(60,089,864 - 60,090,952)
sequence
gaattctgagtccgggtggcatcaaggacagcctctgacaggaagcacac
tcaggaatctcagaaatttgatgctacaatttcaaaataatctaaatagt
ctttgggtctacccagagacacaagattaaaagcacaatattgttggaac
aataagaaaagaaacaacttcaaagctcaactttcaacaaagaattcaag
ctgaaagcagaaagtgaaatctagttaaatattttggtttagcaagagtt
ctttgcctcacccagccctgttccctaaagcttgtggcttcaatattcct
tggcttctttccttagtccccacctccaacccctggctgtagcttctaaa
taatagcattccaaagctggagggccagggtcactctgggatctaacaat
gcaccagtaactctttctattattggggaggggttctgcttgcccctcaa
cacagcaatgcacgccccccataggaaacctacataattccaattccacc
aagcagaaggggaaacgaaagtttgatcgctgacagcttggccaaattga
gtctgaagcacttcatccaaacaactatcagtctagaacgtaaccccaag
ggaccttagcattcaaagaattgcccaaagtggagcaatctggaggaacc
agacatagctaaatatctcagcggtctccatggagccagccctagtttga
catgacagacaatctcaactactcaccctttattcactacagaactctta
gccaatgttctcaccatactgtctagaagatagacacttggatttactgt
gtcggagaaacagatggccacttctggaatgtggggtaagatgttcgtat
gaaatgagcttttggataatgatcttatgttcgtcctcagagaacacaga
gagaaaaacctcaatgatgtcacagtgtcgagtacatacccacccccagc
agatggcacagcctgttgtttgtggaagccactctccctcaaactagtca
gcaagcagagtagtacccattcacccatcgccacagaacacgtgatgtgc
tgcagatgtgccttaataaagggggggggacgagtctaagaacacaggct
ggaaatgagaagacttcaggacattctaatgtgaatttcaaaacaagaca

gaattcaaagatgtcctcagctacatgagttcaaggccaacctgggctac
atgaataagaccctgtctcaaaaaaaaaaaaaaaggtcctaagaaataga
gggaatgccctctccagtgtgggatgtcttcgctttccaaagcagcgtta
gtaccctgtaagtgcatggtgagtagccaggcagggcagagtggtggcac
caatgggtcagggctgtgggtggctgactgacaagctagataggctggtg
cacaggtggggatgtttaaattaaacacaagcttggacaggatcacccct
atgttatggatttggcctaatgctgcttgtgttgtataatttggtcccca
aaattgcctgggactcttaaagacccacctctgtcttcacgtagaagtta
ggcccagccattgagctatttaaggcatattagaatataaaggctgcttg
tatgcatgggtgtctttcattcaggaacccagaacattggggtgggtatc
taggagtgccaccaccaccaccacaggggtcgatttgagtagggttaatt
gggatctgcaacaccccaatatccctctgcttctaagatcctgtaagtac
gaagttctgaagaattcaaaggaaaacttgaaaatccagaacgggaccat
agcaaaagaatccatgtgtcctctgcaatgggacttctcacctgggctcc
aaactctacaatacacttctgcacactggctcggagcgcctcctcggcct
ctgccaccaaagcctagtttccttatatttacttctcaccttgaacctgc
tcttcagtttctgatcttgacaagaggcctccttccccttcctatttctt
cttggagaacaagctctcactaggtagctccaggctggccttgaactcct
gatcctctagcttctacttctggagtgtcaggtaattaggtgtgcaccac
cgtgcctccttatacctgccattcgcttattgcttcttttaaattcacat
gtctgcttccccggtggatgcccagaaacacgttagcccttgaaagcaag
ctctgtccctattcatctttgaatccctcacttgttcccccacagtgagt
cagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_59953958_59955125
seq2: B6Ng01-322K17.b_47_1196

seq1  GAATTCTGAGTCCGGGTGGCATCAAGGACAGCCTCTGACAGGAAGCACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGTCCGGGTGGCATCAAGGACAGCCTCTGACAGGAAGCACAC  50

seq1  TCAGGAATCTCAGAAATTTGATGCTACAATTTCAAAATAATCTAAATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAATCTCAGAAATTTGATGCTACAATTTCAAAATAATCTAAATAGT  100

seq1  CTTTGGGTCTACCCAGAGACACAAGATTAAAAGCACAATATTGTTGGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGTCTACCCAGAGACACAAGATTAAAAGCACAATATTGTTGGAAC  150

seq1  AATAAGAAAAGAAACAACTTCAAAGCTCAACTTTCAACAAAGAATTCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAAAAGAAACAACTTCAAAGCTCAACTTTCAACAAAGAATTCAAG  200

seq1  CTGAAAGCAGAAAGTGAAATCTAGTTAAATATTTTGGTTTAGCAAGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGCAGAAAGTGAAATCTAGTTAAATATTTTGGTTTAGCAAGAGTT  250

seq1  CTTTGCCTCACCCAGCCCTGTTCCCTAAAGCTTGTGGCTTCAATATTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCTCACCCAGCCCTGTTCCCTAAAGCTTGTGGCTTCAATATTCCT  300

seq1  TGGCTTCTTTCCTTAGTCCCCACCTCCAACCCCTGGCTGTAGCTTCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTTTCCTTAGTCCCCACCTCCAACCCCTGGCTGTAGCTTCTAAA  350

seq1  TAATAGCATTCCAAAGCTGGAGGGCCAGGGTCACTCTGGGATCTAACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCATTCCAAAGCTGGAGGGCCAGGGTCACTCTGGGATCTAACAAT  400

seq1  GCACCAGTAACTCTTTCTATTATTGGGGAGGGGTTCTGCTTGCCCCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGTAACTCTTTCTATTATTGGGGAGGGGTTCTGCTTGCCCCTCAA  450

seq1  CACAGCAATGCACGCCCCCCATAGGAAACCTACATAATTCCAATTCCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAATGCACGCCCCCCATAGGAAACCTACATAATTCCAATTCCACC  500

seq1  AAGCAGAAGGGGAAACGAAAGTTTGATCGCTGACAGCTTGGCCAAATTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAAGGGGAAACGAAAGTTTGATCGCTGACAGCTTGGCCAAATTGA  550

seq1  GTCTGAAGCACTTCATCCAAACAACTATCAGTCTAGAACGTAACCCCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGCACTTCATCCAAACAACTATCAGTCTAGAACGTAACCCCAAG  600

seq1  GGACCTTAGCATTCAAAGAATTGCCCAAAGTGGAGCAATCTGGAGGAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTAGCATTCAAAGAATTGCCCAAAGTGGAGCAATCTGGAGGAACC  650

seq1  AGACATAGCTAAATATCTCAGCGGTCTCCATGGAGCCAGCCCTAGTTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAGCTAAATATCTCAGCGGTCTCCATGGAGCCAGCCCTAGTTTGA  700

seq1  CATGACAGACAATCTCAACTACTCACCCTTTATTCACTACAGAACTCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAGACAATCTCAACTACTCACCCTTTATTCACTACAGAACTCTTA  750

seq1  GCCAATGTTCTCACCATACTGTCTAGAAGATAGACACTTGGATTTACTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATGTTCTCACCATACTGTCTAGAAGATAGACACTTGGATTTACTGT  800

seq1  GTCGGAGAAACAGATGGCCACTTCTGGAATGTGGGGTAAGATGTTCGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGAGAAACAGATGGCCACTTCTGGAATGTGGGGTAAGATGTTCGTAT  850

seq1  GAAATGAGCTTTTGGATAATGATCTTATGTTCGTCCTCAGAGAACACAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAGCTTTTGGATAATGATCTTATGTTCGTCCTCAGAGAACACAGA  900

seq1  GAGAAAAACCTCAATGATGTCACAGTGTCGAGTACATACCCACCCCCAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAACCTCAATGATGTCACAGTGTCGAGTACATACCCACCCCCAGC  950

seq1  AGGATGGCACAGCCTGTTGTTTGTGGAAGGCCACTCTCCCCTCAAACTAG  1000
      | |||||||||||||||||||||||||| |||||||| ||||||||||||
seq2  A-GATGGCACAGCCTGTTGTTTGTGGAA-GCCACTCT-CCCTCAAACTAG  997

seq1  TCAGCAAAGCAGAAGTAGTACCCATTCCACCCATCGCCACAG-ACACGGT  1049
      ||||| |||||| ||||||||||||| ||||||||||||||| |||| ||
seq2  TCAGC-AAGCAG-AGTAGTACCCATT-CACCCATCGCCACAGAACAC-GT  1043

seq1  GATGTGCTGCAGATGTGGCTTTAATAAAGGGGGGGGGACGAAGTCATAAG  1099
      |||||||||||||||| || |||||||||||||||||||| |||| ||||
seq2  GATGTGCTGCAGATGT-GCCTTAATAAAGGGGGGGGGACG-AGTC-TAAG  1090

seq1  AAACACAAGCTTGGGAAATGAGAGAGACTTCAAGGACATTCTAAATGTG-  1148
       |||||| |||  |||||||||| ||||||| |||||||||| |||||| 
seq2  -AACACAGGCT--GGAAATGAGA-AGACTTC-AGGACATTCT-AATGTGA  1134

seq1  ATTTCAAAAAACACAAGACA  1168
      ||||||||    ||||||||
seq2  ATTTCAAA----ACAAGACA  1150

seq1: chr9_60089864_60090952
seq2: B6Ng01-322K17.g_70_1173 (reverse)

seq1  GCTGACTCACTGTGGGG--AC-AGTGGAGGA-TCAAAGATGAATA-GGAC  45
      |||||||||||||||||  || ||||  ||| ||||||||||||| ||||
seq2  GCTGACTCACTGTGGGGGAACAAGTGAGGGATTCAAAGATGAATAGGGAC  50

seq1  A-AGCTTGC-TTCTAGGGCTAACGTGTTTCTGGGCATCCA-CGGGGAAGC  92
      | ||||||| ||| |||||||||||||||||||||||||| |||||||||
seq2  AGAGCTTGCTTTCAAGGGCTAACGTGTTTCTGGGCATCCACCGGGGAAGC  100

seq1  AGACATGTGAATTTAAAAG-AGCAAT-AGCGAATGGCAGGTATAAGGAGG  140
      ||||||||||||||||||| |||||| |||||||||||||||||||||||
seq2  AGACATGTGAATTTAAAAGAAGCAATAAGCGAATGGCAGGTATAAGGAGG  150

seq1  CACGGTGGTGCACACCT-ATTACCTGACACTCCAGAAGTAGAAGCTAGAG  189
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CACGGTGGTGCACACCTAATTACCTGACACTCCAGAAGTAGAAGCTAGAG  200

seq1  GATCAGGAGTTCAAGGCCAGCCTGG-GCTACCTAGTGAGAGCTTG-TCTC  237
      ||||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  GATCAGGAGTTCAAGGCCAGCCTGGAGCTACCTAGTGAGAGCTTGTTCTC  250

seq1  C-AGAAGAAATAGGAAGGGGAAGGAGGCCTCTTGTCAAGATCAGAAACTG  286
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGAAATAGGAAGGGGAAGGAGGCCTCTTGTCAAGATCAGAAACTG  300

seq1  AAGAGCAGGTTCAAGGTGAGAAGTAAATATAAGG-AACTAGGCTTTGGTG  335
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGAGCAGGTTCAAGGTGAGAAGTAAATATAAGGAAACTAGGCTTTGGTG  350

seq1  GCAGAGGCCGAGGAGGCGCTCCGAGCCAGTGTGCAGAAGTGTATTGTAGA  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCCGAGGAGGCGCTCCGAGCCAGTGTGCAGAAGTGTATTGTAGA  400

seq1  GTTTGGAGCCCAGGTGAGAAGTCCCATTGCAGAGGACACATGGATTCTTT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAGCCCAGGTGAGAAGTCCCATTGCAGAGGACACATGGATTCTTT  450

seq1  TGCTATGGTCCCGTTCTGGATTTTCAAGTTTTCCTTTGAATTCTTCAGAA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGGTCCCGTTCTGGATTTTCAAGTTTTCCTTTGAATTCTTCAGAA  500

seq1  CTTCGTACTTACAGGATCTTAGAAGCAGAGGGATATTGGGGTGTTGCAGA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTACTTACAGGATCTTAGAAGCAGAGGGATATTGGGGTGTTGCAGA  550

seq1  TCCCAATTAACCCTACTCAAATCGACCCCTGTGGTGGTGGTGGTGGCACT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATTAACCCTACTCAAATCGACCCCTGTGGTGGTGGTGGTGGCACT  600

seq1  CCTAGATACCCACCCCAATGTTCTGGGTTCCTGAATGAAAGACACCCATG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATACCCACCCCAATGTTCTGGGTTCCTGAATGAAAGACACCCATG  650

seq1  CATACAAGCAGCCTTTATATTCTAATATGCCTTAAATAGCTCAATGGCTG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAGCAGCCTTTATATTCTAATATGCCTTAAATAGCTCAATGGCTG  700

seq1  GGCCTAACTTCTACGTGAAGACAGAGGTGGGTCTTTAAGAGTCCCAGGCA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAACTTCTACGTGAAGACAGAGGTGGGTCTTTAAGAGTCCCAGGCA  750

seq1  ATTTTGGGGACCAAATTATACAACACAAGCAGCATTAGGCCAAATCCATA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGGGACCAAATTATACAACACAAGCAGCATTAGGCCAAATCCATA  800

seq1  ACATAGGGGTGATCCTGTCCAAGCTTGTGTTTAATTTAAACATCCCCACC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGGGTGATCCTGTCCAAGCTTGTGTTTAATTTAAACATCCCCACC  850

seq1  TGTGCACCAGCCTATCTAGCTTGTCAGTCAGCCACCCACAGCCCTGACCC  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACCAGCCTATCTAGCTTGTCAGTCAGCCACCCACAGCCCTGACCC  900

seq1  ATTGGTGCCACCACTCTGCCCTGCCTGGCTACTCACCATGCACTTACAGG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGCCACCACTCTGCCCTGCCTGGCTACTCACCATGCACTTACAGG  950

seq1  GTACTAACGCTGCTTTGGAAAGCGAAGACATCCCACACTGGAGAGGGCAT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAACGCTGCTTTGGAAAGCGAAGACATCCCACACTGGAGAGGGCAT  1000

seq1  TCCCTCTATTTCTTAGGACCTTTTTTTTTTTTTTTGAGACAGGGTCTTAT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTATTTCTTAGGACCTTTTTTTTTTTTTTTGAGACAGGGTCTTAT  1050

seq1  TCATGTAGCCCAGGTTGGCCTTGAACTCATGTAGCTGAGGACATCTTTGA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAGCCCAGGTTGGCCTTGAACTCATGTAGCTGAGGACATCTTTGA  1100

seq1  ATTC  1089
      ||||
seq2  ATTC  1104