BAC Information

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BAC

Clone NameB6Ng01-323N08
Chromosome9 (Build37)
Map Location 23,920,076 - 24,022,143
singlet/doubletdoublet
Overlap geneNpsr1
Upstream geneBmper, LOC100040866, LOC100040878, LOC100040893
Downstream geneDpy19l1, Cypt4, Tbx20, LOC666251, LOC100040960, Herpud2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323N08.bB6Ng01-323N08.g
ACCGA112308GA112309
length1,1631,105
definitionB6Ng01-323N08.b B6Ng01-323N08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,920,076 - 23,921,233)(24,021,026 - 24,022,143)
sequence
gaattcaaatggaacctcagaatttaattgtttcaaagcttccaatctac
ctcatttgtgttaataaggacatcctcttgtgtgccaagaaagagtcaca
agagccacctttgaggtgcataaggaacattggtatttctgttgctggtt
gaatctaaagtttcctggcaaccagaacactgaatctcataataatgtga
acatagttccatgctccaagtcctttctgactgaaaatgatatggaacag
gaaattaacacattcaattaagcttagtctatggctcccagcactgctga
ttaaacacttcaaaccagttgactaatcctccctgcacaaacaagaaatg
tgcatgcagtcattgaacatgtcctagatgctaaactaagaaatatattt
tagatggttatctggagttggtggaaagaagcacacatttaaaatctgct
acctgtgaagatggtggtgtcactgaagatccagatagtcttttctccaa
gaattctcctagctcgagacaagatctaggacagaccatgccccattttg
cgaggtgtctttcattattcagctctgcttcctcattatcaatcttgttt
acttggtgcccatcatgtacatgtctagacagccaggatctctcctcaag
aagtgccttttgctcaacctatcttccctactgtcaattctttgcttgac
tatttttcaggtcttcagactcaactcaccttgtgagtctatatttttag
aatgcaagctctggtcaaccatgacaacctcacttcaagttcctcatttg
ggatgttcattcataaacattttcccgaaagccattttttttttttacaa
tctttgccctcaccatttgactatgaactctgtggtttagactcccatat
aaccctgcgaactgtaagccaactgaatgattattcacagttatactatt
tctaagacaagtttccatttttgttctgagcattctttctgtacaactgt
gtaatagcccagtctcttctcaaggtaaatacctcccctggtcaatcctc
agaaggtttatagaatgactcttagccacagctactctaagaataggtga
tccacaagtcttgctatactgcataagaaccagttaatcttaactcctct
atttccagctagc

gaattcagagctagggaaatctatgcctttttctccccatcaagtgtctt
tgggatgttgaccttgtcagctcagtgtcagagcgtctttaaagtacatt
ttgccaggaacttgttggtcttgacctccactgtgtgttgttttctgtct
tctccatggctgactccatgatcaggacaacttgttgatggcagaatttc
caagtatgcttttctcctgaaagaatttggactgtctctgagacatggtg
tctttcatcaatggtgatgtgttgattcttttcagtgtggctgtgatcac
ctttcaccactgcccactggcttcagctttggggtaggcagggaatccct
ctgctttcagcatcatcttctttagtcccatggatgttgcctttttctaa
atgtagctccttgttcctcaagagcctaccctgagatgctgtggactcaa
gatctcatttttagcaaggcttcatatctaagattgcctcctccttgcct
gcaccttgcctgttcttgcatttccataattttctttgattttcacactc
acatcataggagattaaccataaaataatagtctgtcctgatttccaagg
tcatttaactaaggtgaattgtggcagtgacaagggctcatgatgtagat
tctgaaaggaggatgtaataacggtaaaactggtaaatgggttacacatt
ggtcaagaagaaaagatattacatagctaagttaggttttaaaaattttt
ccagctgtcttaagagttccagaaagaaagaaaaaagccctgaaaaaaat
gattgaatgtctctccatcttttcatatttctcaagattggcaccaagat
ggagtgattttagatgcaccagaagaagtcatacactggatcagtggata
tttcaaggaagtgactctcaaatttgaagattctctgagggtcaccagac
catgtgtttatcagataaaactatttaatatatatcatattttctgcatt
ttcactttgtgtctctcatgggttacacagtgctttgtaaattctctgta
tacaaatattgtgtgcactcgaacttaaatataggaaacgtccattccag
tggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_23920076_23921233
seq2: B6Ng01-323N08.b_49_1211

seq1  GAATTCAAATGGAACCTCAGAATTTAATTGTTTCAAAGCTTCCAATCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGGAACCTCAGAATTTAATTGTTTCAAAGCTTCCAATCTAC  50

seq1  CTCATTTGTGTTAATAAGGACATCCTCTTGTGTGCCAAGAAAGAGTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTGTGTTAATAAGGACATCCTCTTGTGTGCCAAGAAAGAGTCACA  100

seq1  AGAGCCACCTTTGAGGTGCATAAGGAACATTGGTATTTCTGTTGCTGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCACCTTTGAGGTGCATAAGGAACATTGGTATTTCTGTTGCTGGTT  150

seq1  GAATCTAAAGTTTCCTGGCAACCAGAACACTGAATCTCATAATAATGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTAAAGTTTCCTGGCAACCAGAACACTGAATCTCATAATAATGTGA  200

seq1  ACATAGTTCCATGCTCCAAGTCCTTTCTGACTGAAAATGATATGGAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTTCCATGCTCCAAGTCCTTTCTGACTGAAAATGATATGGAACAG  250

seq1  GAAATTAACACATTCAATTAAGCTTAGTCTATGGCTCCCAGCACTGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAACACATTCAATTAAGCTTAGTCTATGGCTCCCAGCACTGCTGA  300

seq1  TTAAACACTTCAAACCAGTTGACTAATCCTCCCTGCACAAACAAGAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACACTTCAAACCAGTTGACTAATCCTCCCTGCACAAACAAGAAATG  350

seq1  TGCATGCAGTCATTGAACATGTCCTAGATGCTAAACTAAGAAATATATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCAGTCATTGAACATGTCCTAGATGCTAAACTAAGAAATATATTT  400

seq1  TAGATGGTTATCTGGAGTTGGTGGAAAGAAGCACACATTTAAAATCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGTTATCTGGAGTTGGTGGAAAGAAGCACACATTTAAAATCTGCT  450

seq1  ACCTGTGAAGATGGTGGTGTCACTGAAGATCCAGATAGTCTTTTCTCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGAAGATGGTGGTGTCACTGAAGATCCAGATAGTCTTTTCTCCAA  500

seq1  GAATTCTCCTAGCTCGAGACAAGATCTAGGACAGACCATGCCCCATTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTAGCTCGAGACAAGATCTAGGACAGACCATGCCCCATTTTG  550

seq1  CGAGGTGTCTTTCATTATTCAGCTCTGCTTCCTCATTATCAATCTTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGTGTCTTTCATTATTCAGCTCTGCTTCCTCATTATCAATCTTGTTT  600

seq1  ACTTGGTGCCCATCATGTACATGTCTAGACAGCCAGGATCTCTCCTCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTGCCCATCATGTACATGTCTAGACAGCCAGGATCTCTCCTCAAG  650

seq1  AAGTGCCTTTTGCTCAACCTATCTTCCCTACTGTCAATTCTTTGCTTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCTTTTGCTCAACCTATCTTCCCTACTGTCAATTCTTTGCTTGAC  700

seq1  TATTTTTCAGGTCTTCAGACTCAACTCACCTTGTGAGTCTATATTTTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCAGGTCTTCAGACTCAACTCACCTTGTGAGTCTATATTTTTAG  750

seq1  AATGCAAGCTCTGGTCAACCATGACAACCTCACTTCAAGTTCCTCATTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAGCTCTGGTCAACCATGACAACCTCACTTCAAGTTCCTCATTTG  800

seq1  GGATGTTCATTCATAAACATTTTCCCGAAAGCCA-TTTTTTTTTTTACAA  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGATGTTCATTCATAAACATTTTCCCGAAAGCCATTTTTTTTTTTTACAA  850

seq1  TCTTTGCCCTCACCATTTGACTATGAACTCTGTGGTTTAGACTCCCATAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCCCTCACCATTTGACTATGAACTCTGTGGTTTAGACTCCCATAT  900

seq1  AACCCTGCGAACTGTAAGCCAACTGAATGA-TATTCACAGTTATACTATT  948
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AACCCTGCGAACTGTAAGCCAACTGAATGATTATTCACAGTTATACTATT  950

seq1  TCTAAGACAAGTTTCCATTTTTGTTCTGAGCATTCTTTCTGTACAACTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGACAAGTTTCCATTTTTGTTCTGAGCATTCTTTCTGTACAACTGT  1000

seq1  GTATTAGCCCAGTCTCTTCTCAAGGTAAATACCTCCCCTGGTTCAATCCT  1048
      ||| ||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTAATAGCCCAGTCTCTTCTCAAGGTAAATACCTCCCCTGG-TCAATCCT  1049

seq1  CAGAA-GTTTATAGAATGACTCTTAGGCCACAGCTACTCTA--GATAGGT  1095
      ||||| ||||||||||||||||||| |||||||||||||||   ||||| 
seq2  CAGAAGGTTTATAGAATGACTCTTA-GCCACAGCTACTCTAAGAATAGG-  1097

seq1  TGATCCAC-AGTCCTGCTATACTGCAT-AGAACAAGTTTTATCCTAAACT  1143
      |||||||| |||| ||||||||||||| ||||| ||  |||  || ||||
seq2  TGATCCACAAGTCTTGCTATACTGCATAAGAACCAG--TTAATCTTAACT  1145

seq1  CCTATCT---CAGCTAGC  1158
      ||| | |   ||||||||
seq2  CCTCTATTTCCAGCTAGC  1163


seq1: chr9_24021026_24022143
seq2: B6Ng01-323N08.g_67_1171 (reverse)

seq1  TTCCACT-GAATGGACGTTTTCTATATCTAGTTTCTGAGTGCACA-AATA  48
      ||||||| |||||||||||| |||||| ||  ||| ||||||||| ||||
seq2  TTCCACTGGAATGGACGTTTCCTATATTTAAGTTC-GAGTGCACACAATA  49

seq1  TTTGTAATAACAGAGGAATTTTACAAAAGCCACTGTGT-ACCCATGAGAG  97
      ||||||   ||||||  | ||||||||   |||||||| |||||||||||
seq2  TTTGTA--TACAGAG--AATTTACAAA--GCACTGTGTAACCCATGAGAG  93

seq1  ACACAAAGTGAAAAATGCAGAAAATTATTGATATTATTATTAAAATAGTT  147
      |||||||||| ||||||||||||||   ||||||   |||| |||||| |
seq2  ACACAAAGTG-AAAATGCAGAAAAT--ATGATAT--ATATT-AAATAG-T  136

seq1  TTTATCTGATAAACACATGGTCTTGGTGACCCTCAGAGAATCTTCAAATT  197
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTATCTGATAAACACATGGTC-TGGTGACCCTCAGAGAATCTTCAAATT  185

seq1  TGAGAGTCACTTCCTTGAAATATCCACTGATCCAGTGTATGACTTCTTTC  247
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGAGAGTCACTTCCTTGAAATATCCACTGATCCAGTGTATGACTTC-TTC  234

seq1  TGGTGCATCTAAAATCACTCCATCTTGGTGCCAATCTTGAGAAATATGAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCATCTAAAATCACTCCATCTTGGTGCCAATCTTGAGAAATATGAA  284

seq1  AAGATGGAGAGACATTCAATCATTTTTTTCAGGGCTTTTTTCTTTCTTTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGAGAGACATTCAATCATTTTTTTCAGGGCTTTTTTCTTTCTTTC  334

seq1  TGGAACTCTTAAGACAGCTGGAAAAATTTTTAAAACCTAACTTAGCTATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCTTAAGACAGCTGGAAAAATTTTTAAAACCTAACTTAGCTATG  384

seq1  TAATATCTTTTCTTCTTGACCAATGTGTAACCCATTTACCAGTTTTACCG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCTTTTCTTCTTGACCAATGTGTAACCCATTTACCAGTTTTACCG  434

seq1  TTATTACATCCTCCTTTCAGAATCTACATCATGAGCCCTTGTCACTGCCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACATCCTCCTTTCAGAATCTACATCATGAGCCCTTGTCACTGCCA  484

seq1  CAATTCACCTTAGTTAAATGACCTTGGAAATCAGGACAGACTATTATTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCACCTTAGTTAAATGACCTTGGAAATCAGGACAGACTATTATTTT  534

seq1  ATGGTTAATCTCCTATGATGTGAGTGTGAAAATCAAAGAAAATTATGGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAATCTCCTATGATGTGAGTGTGAAAATCAAAGAAAATTATGGAA  584

seq1  ATGCAAGAACAGGCAAGGTGCAGGCAAGGAGGAGGCAATCTTAGATATGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGAACAGGCAAGGTGCAGGCAAGGAGGAGGCAATCTTAGATATGA  634

seq1  AGCCTTGCTAAAAATGAGATCTTGAGTCCACAGCATCTCAGGGTAGGCTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGCTAAAAATGAGATCTTGAGTCCACAGCATCTCAGGGTAGGCTC  684

seq1  TTGAGGAACAAGGAGCTACATTTAGAAAAAGGCAACATCCATGGGACTAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAACAAGGAGCTACATTTAGAAAAAGGCAACATCCATGGGACTAA  734

seq1  AGAAGATGATGCTGAAAGCAGAGGGATTCCCTGCCTACCCCAAAGCTGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGATGCTGAAAGCAGAGGGATTCCCTGCCTACCCCAAAGCTGAA  784

seq1  GCCAGTGGGCAGTGGTGAAAGGTGATCACAGCCACACTGAAAAGAATCAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGGGCAGTGGTGAAAGGTGATCACAGCCACACTGAAAAGAATCAA  834

seq1  CACATCACCATTGATGAAAGACACCATGTCTCAGAGACAGTCCAAATTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCACCATTGATGAAAGACACCATGTCTCAGAGACAGTCCAAATTCT  884

seq1  TTCAGGAGAAAAGCATACTTGGAAATTCTGCCATCAACAAGTTGTCCTGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAGAAAAGCATACTTGGAAATTCTGCCATCAACAAGTTGTCCTGA  934

seq1  TCATGGAGTCAGCCATGGAGAAGACAGAAAACAACACACAGTGGAGGTCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAGTCAGCCATGGAGAAGACAGAAAACAACACACAGTGGAGGTCA  984

seq1  AGACCAACAAGTTCCTGGCAAAATGTACTTTAAAGACGCTCTGACACTGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAACAAGTTCCTGGCAAAATGTACTTTAAAGACGCTCTGACACTGA  1034

seq1  GCTGACAAGGTCAACATCCCAAAGACACTTGATGGGGAGAAAAAGGCATA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACAAGGTCAACATCCCAAAGACACTTGATGGGGAGAAAAAGGCATA  1084

seq1  GATTTCCCTAGCTCTGAATTC  1118
      |||||||||||||||||||||
seq2  GATTTCCCTAGCTCTGAATTC  1105


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