BAC Information

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BAC

Clone NameB6Ng01-328K08
Chromosome9 (Build37)
Map Location 33,326,041 - 33,327,303
singlet/doubletsinglet
Overlap genenone
Upstream geneFli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343, Kirrel3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328K08.bB6Ng01-328K08.g
ACCGA115849GA115850
length1,2401,243
definitionB6Ng01-328K08.b B6Ng01-328K08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccaggggtggggacagatgataaaggagacaagtaatgagccc
cacaatgggtattatccagagcacatactagcctaaccttgcagagtttt
gattttcttccatggatttcttttgcctaattaaaaaaaaaatggcaaat
ttagcatttctactaccttcatgagcacaaatgaaatgaacacttctcat
cgaaactgttctccaagttgaatgcagttgttctatggttttatttcttt
tcctatcccacgactcacccctttccagccagcactatccagtgatattc
ttgtttccctttatcacaattacaatccatcagcaggtactacagccctc
ctcatttgtttaaagagtcacggcttattagataatgggtctttgtgcat
ctccatttttttcctcatgtcatacaggatattttatttctcctgtttat
tcactaaaagcccattgcacttttcctgacaagtagatttacagtttcag
atgtgaagggtagtgtcttaagcaaggctgtggatgctctcaaatacctt
ttagtcattgatggtaacatgcccctttcagaagatccaggagctcaaga
aagaaggttaatcttaggccagggagatctaaaatgaagaaactggcttg
gttgtgctcacaccgtagcagtgcctataactaacttaactaagaggtgc
ctatgagcacagaagagcatattcaaaatgaattgttatacctgcccagc
tacatgatcccattgcaggctgtccattggttacaattctctcaaatatt
tactctaaggtttgaagaatgaatttagaaatgccctatctgactcatct
caagcaggtaaagtacagagatctgtccatgtatgaactgtatgtccctg
tgaggttcatgtttatctcgcactgttacggggattagggtacagccatg
ttagaactgatgctatgttttataacatttgttttgagtaggatggtaca
acattatatgtgcttcaggcatgctgtttcatcttatttgaataaagggt
catttgtgtgtagtacctaatccctaatcagtattcagttttagtatcat
aaatgtttctgaagactctttatttccaaatcaaaatttatgcctcttat
gtgctagttttatttcctcagcgatcgtagcattggtagtctgatggatg
gaatattgcctaaggttcagttcctcccacaggagcaata

gaattccaggtttcacagcacatttaattgaagatgacatatggtgtatg
ttgggagcctatcaaaacttgggtacccacagatgtatgggcccatatct
ggggactctgtatgattctattgaccttcatgtctgtttgtatcaggatc
atgccatttttattatcataaatctttggtgttagttttggtaataactc
ctgcagtatccgttgcttgatcttttattcttccatataaatttggaggt
tttttttttctttctgtatttgtgaggaatggttctagaactttgaatac
atttgaatgtacagattgctctcttttttctttcgtatgatagccatttt
caaatgtttaattctaacccatgagcatgggaggtctttctactttctaa
tgtcttttagaaatttttttctcagtgacttaaaagcttcattgtagagg
tcttttgtttcattagttataatcattttttgtcattatatctgggttat
tgtgaatgggatattttcttgatttctttttcagtgtatttatcataggt
atagaggaaaggtaactttaacatgttaaaattgtgtattgttattcgct
aaacatattcctcaacatcaagagtttttgttgtggtcatataaaataca
tgatattgtttcaatttttcttagtttgttcagactgtctttgcatcctg
atatgtgaccaattaaagttccacaggctgctaagaataaggttataatg
tttcatagatgtctattaggttatgttcacttatgatgctacttaaattc
agtattttcctgttgttctattctgttttgttttgtttttgttttgtttt
gtttagatgatctttggtaaagatgatcattttgttctggttagattttg
tcaatttgacaggagctagaatcccttttaagaaaaggaaccacaattaa
gaaaacatctccatcagattgtcccatggacaaatcaatgcagacatttc
ttgattaacattgatgtgggagaatcccaacccattttgcatgatgctac
ttgggcagctgatcctgggtgttattaaaagattatctgattgagaaatg
aagatgagcatagtagcttgtctatgtggcccttgcctctagtccatatt
cttgagtcttgtcttggcctctcctgcatgatcaaagttaaactggaaca
attctactcctccggctgctttgtaccatggggtggttagtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_33326041_33327303
seq2: B6Ng01-328K08.b_48_1287

seq1  GAATTCTCCAGGGGTGGGGACAGATGATAAAGGAGACAAGTAATGAGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGGGGTGGGGACAGATGATAAAGGAGACAAGTAATGAGCCC  50

seq1  CACAATGGGTATTATCCAGAGCACATACTAGCCTAACCTTGCAGAGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGGGTATTATCCAGAGCACATACTAGCCTAACCTTGCAGAGTTTT  100

seq1  GATTTTCTTCCATGGATTTCTTTTGCCTAATTAAAAAAAAAATGGCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCTTCCATGGATTTCTTTTGCCTAATTAAAAAAAAAATGGCAAAT  150

seq1  TTAGCATTTCTACTACCTTCATGAGCACAAATGAAATGAACACTTCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATTTCTACTACCTTCATGAGCACAAATGAAATGAACACTTCTCAT  200

seq1  CGAAACTGTTCTCCAAGTTGAATGCAGTTGTTCTATGGTTTTATTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAACTGTTCTCCAAGTTGAATGCAGTTGTTCTATGGTTTTATTTCTTT  250

seq1  TCCTATCCCACGACTCACCCCTTTCCAGCCAGCACTATCCAGTGATATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATCCCACGACTCACCCCTTTCCAGCCAGCACTATCCAGTGATATTC  300

seq1  TTGTTTCCCTTTATCACAATTACAATCCATCAGCAGGTACTACAGCCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCCTTTATCACAATTACAATCCATCAGCAGGTACTACAGCCCTC  350

seq1  CTCATTTGTTTAAAGAGTCACGGCTTATTAGATAATGGGTCTTTGTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTGTTTAAAGAGTCACGGCTTATTAGATAATGGGTCTTTGTGCAT  400

seq1  CTCCATTTTTTTCCTCATGTCATACAGGATATTTTATTTCTCCTGTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTTTTTTCCTCATGTCATACAGGATATTTTATTTCTCCTGTTTAT  450

seq1  TCACTAAAAGCCCATTGCACTTTTCCTGACAAGTAGATTTACAGTTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAAAGCCCATTGCACTTTTCCTGACAAGTAGATTTACAGTTTCAG  500

seq1  ATGTGAAGGGTAGTGTCTTAAGCAAGGCTGTGGATGCTCTCAAATACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAGGGTAGTGTCTTAAGCAAGGCTGTGGATGCTCTCAAATACCTT  550

seq1  TTAGTCATTGATGGTAACATGCCCCTTTCAGAAGATCCAGGAGCTCAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCATTGATGGTAACATGCCCCTTTCAGAAGATCCAGGAGCTCAAGA  600

seq1  AAGAAGGTTAATCTTAGGCCAGGGAGATCTAAAATGAAGAAACTGGCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGTTAATCTTAGGCCAGGGAGATCTAAAATGAAGAAACTGGCTTG  650

seq1  GTTGTGCTCACACCGTAGCAGTGCCTATAACTAACTTAACTAAGAGGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGCTCACACCGTAGCAGTGCCTATAACTAACTTAACTAAGAGGTGC  700

seq1  CTATGAGCACAGAAGAGCATATTCAAAATGAATTGTTATACCTGCCCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGCACAGAAGAGCATATTCAAAATGAATTGTTATACCTGCCCAGC  750

seq1  TACATGATCCCATTGCAGGCTGTCCATTGGTTACAATTCTCTCAAATATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGATCCCATTGCAGGCTGTCCATTGGTTACAATTCTCTCAAATATT  800

seq1  TACTCTAAGGTTTGAAGAATGAATTTAGAAATGCCCTATCTGACTCATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTAAGGTTTGAAGAATGAATTTAGAAATGCCCTATCTGACTCATCT  850

seq1  CAAGCAGGTAAAGTACAGAGATCTGTCCATGTATGAACTGTATGTCCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGGTAAAGTACAGAGATCTGTCCATGTATGAACTGTATGTCCCTG  900

seq1  TGAGGTTCATGTTTATCTCGCACTGTTACGGGGATTAGGGTACAGCCATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTCATGTTTATCTCGCACTGTTACGGGGATTAGGGTACAGCCATG  950

seq1  TTAGAACTGATGCTATGTTTTATAACATTTGTTTTTGAGTAGGGATGGTA  1000
      ||||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  TTAGAACTGATGCTATGTTTTATAACATTTG-TTTTGAGTA-GGATGGTA  998

seq1  CAACATTATATGTTGCTTCAGGGCATGCTGTTTCATCTATTTGGAATAAA  1050
      |||||||||||| ||||||| |||||||||||||||||  || |||||||
seq2  CAACATTATATG-TGCTTCA-GGCATGCTGTTTCATCTTATTTGAATAAA  1046

seq1  GGGTCATTTGTGTTGTAAGTACCTAATCCCTAATCAGTATTCAGGTTTTA  1100
      |||||||||||| ||| |||||||||||||||||||||||||| ||||||
seq2  GGGTCATTTGTG-TGT-AGTACCTAATCCCTAATCAGTATTCA-GTTTTA  1093

seq1  GGTAATCAATAAATGTTTCTGAAAGACCTCTTTAATTTCCCAAATCAAAA  1150
      |   ||| ||||||||||||| |||| |||||||  || |||||||||||
seq2  G--TATC-ATAAATGTTTCTG-AAGA-CTCTTTA--TTTCCAAATCAAAA  1136

seq1  TTTAATGCCTCTTATGTGCTAATTTTTATTTTCCTTCAGCAGTACAGTAG  1200
      ||| |||||||||||||||| | ||||||||  | |||||   |  ||||
seq2  TTT-ATGCCTCTTATGTGCT-AGTTTTATTT--CCTCAGC--GATCGTAG  1180

seq1  CAATTTGTGATGCTTTATGAATTTGATTATTGGCTAAATGTCAGTTTCTC  1250
      ||  ||| |  |  | ||| | | || ||||| ||||   |||||| |||
seq2  CA--TTG-GTAGTCTGATGGA-TGGAATATTGCCTAAGGTTCAGTTCCTC  1226

seq1  CCACAGGA-CAATA  1263
      |||||||| |||||
seq2  CCACAGGAGCAATA  1240


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