BAC Information

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BAC

Clone NameB6Ng01-328K22
Chromosome9 (Build37)
Map Location 70,645,284 - 70,792,285
singlet/doubletdoublet
Overlap geneLipc, LOC100041622
Upstream geneBnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1
Downstream geneLOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1, Tcf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328K22.bB6Ng01-328K22.g
ACCGA115875GA115876
length1,143526
definitionB6Ng01-328K22.b B6Ng01-328K22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,791,158 - 70,792,285)(70,645,284 - 70,645,815)
sequence
gaattcacaataaaaatcacaggcatgtaaacgaggacatctgaagagga
tgatttacgtattcttaaagaacaacaggaaaacaccgaatgctaacatc
tcctgggagagagttgcccagaggttgcctcatatattcactggtaagcc
tgacctcacccatttaccaaaactgtcaccgctaagaattcaccctcaag
aagtaattcagcaaaatcaaaatggtctctcagcatctccgtgatttcca
gatgctaaaatgtcccctagaggaatcccatctacactccagacttctgt
cctcagggatctgcagggacaaaccaggacaaagcagatttccctgggag
gaaaataagggatctggaggggacattagatcaaggagagggggcagcag
ggaaaaggggagccacaaaagggagtgtcagttgtctgaggtgaactgcc
acaggatcagatgggaaacactagtcacttcagacacaggggtgtttcat
acacacacacacacacacacacacacacacacacacactttcatgccttg
tgtgctggttagcatgaaatgcccgtgaaccatcaccaaatagaaccacc
tgagaagagggtctcaattaaaggagggcctgcattagattagcctgtgg
gcatgtcttagggcgggagtgtcttaagagttgattgatgtaggagactc
atcccatggtgggcagcatcattccctaggcaggggtccctaaactgtat
gagaatggagaaagctagcaagcagacagcagggatgtgttcaccctctc
tgctcttgactgtagccgtgctgtgagaagccacgtgagttcctgctttg
acttcccttcaaagatgggctcgtgaacatggcctggagctacagccctc
tttcttatctatgggtcaggcagagtaaaccctttgctgagtgccctctc
cttccccaccagccttcaagcttcttcgggagtcatcccccagtttccac
attgaaactgagtctgatcggtcagtccacgtaggcaacctgcctaagaa
ttcccctgagattgaaggaattcccattcttatctaacccaaagaagaaa
aacacaaactcctcagaaggcagaaatattgttagatttttga
cattcactagttacttatttaaaaattaaaatacccactgtccagctttc
actgctattgctagtggggcaatagaattcctctgtgtccgtttcagtga
gatagatgtgcgatacatgggatgtgtgggatgtaactcctttctgtgat
ccacattttttttctcttttagggagctgtatgtcttggctaatgcgctg
ctacctgtcagcaggggttaattgggattttgttttattgaatgtcaatc
atgtactaaagaaacatgattcctttgtggttcaaaaattggtcagaaaa
aagtagcaaggaattatggggaaattgacttaactgtaaaagacactgtc
aattaaaataacaagtctaaaatggctcttacatttgaacgtgtttgcac
aggttagcatctaatcagagataaaattgtgaaatttttagtgtactaat
acctggagatagtcctataacattgtgtttaagctcagttttaagacggt
ttttactgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_70791158_70792285
seq2: B6Ng01-328K22.b_50_1192 (reverse)

seq1  TCAAAAATCTAAC---ATATCTG-CTTCTGA-GAGTTTGTGTTTT--CTC  43
      |||||||||||||   || |||| ||||||| |||||||||||||   ||
seq2  TCAAAAATCTAACAATATTTCTGCCTTCTGAGGAGTTTGTGTTTTTCTTC  50

seq1  TTTGGGTTAGATA--GATGGGGATTCCTTCAATCTCAGGGGAATTCTTA-  90
      |||||||||||||   ||||| ||||||||||||||||||||||||||| 
seq2  TTTGGGTTAGATAAGAATGGGAATTCCTTCAATCTCAGGGGAATTCTTAG  100

seq1  GCAGGGTGCCTACGTGGACTGACCGATCAGACTCAGTTTCAATGTGGAAA  140
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTGCCTACGTGGACTGACCGATCAGACTCAGTTTCAATGTGGAAA  150

seq1  CTGGGGGATGACTCCCGAAGAAGCTTGAAGGCTGGTGGGG-AGGAGAGGG  189
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTGGGGGATGACTCCCGAAGAAGCTTGAAGGCTGGTGGGGAAGGAGAGGG  200

seq1  CACTCAGC-AAGGGTTTACTCTGCCTGA-CCATAGATAAGAAAGA-GGCT  236
      |||||||| ||||||||||||||||||| |||||||||||||||| ||||
seq2  CACTCAGCAAAGGGTTTACTCTGCCTGACCCATAGATAAGAAAGAGGGCT  250

seq1  GTAGCTCCAGGCCATGTTCACGAG-CCATCTTTGAAGGGAAGTCAAAGCA  285
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTAGCTCCAGGCCATGTTCACGAGCCCATCTTTGAAGGGAAGTCAAAGCA  300

seq1  GGAACTCACGTGGCTTCTCACAGCACGGCTACAGTCAAGAGCAGAGAGGG  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCACGTGGCTTCTCACAGCACGGCTACAGTCAAGAGCAGAGAGGG  350

seq1  TGAACACATCCCTGCTGTCTGCTTGCTAGCTTTCTCCATTCTCATACAGT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACATCCCTGCTGTCTGCTTGCTAGCTTTCTCCATTCTCATACAGT  400

seq1  TTAGGGACCCCTGCCTAGGGAATGATGCTGCCCACCATGGGATGAGTCTC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGACCCCTGCCTAGGGAATGATGCTGCCCACCATGGGATGAGTCTC  450

seq1  CTACATCAATCAACTCTTAAGACACTCCCGCCCTAAGACATGCCCACAGG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCAATCAACTCTTAAGACACTCCCGCCCTAAGACATGCCCACAGG  500

seq1  CTAATCTAATGCAGGCCCTCCTTTAATTGAGACCCTCTTCTCAGGTGGTT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTAATGCAGGCCCTCCTTTAATTGAGACCCTCTTCTCAGGTGGTT  550

seq1  CTATTTGGTGATGGTTCACGGGCATTTCATGCTAACCAGCACACAAGGCA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGGTGATGGTTCACGGGCATTTCATGCTAACCAGCACACAAGGCA  600

seq1  TGAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAAAC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAAAC  650

seq1  ACCCCTGTGTCTGAAGTGACTAGTGTTTCCCATCTGATCCTGTGGCAGTT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGTGTCTGAAGTGACTAGTGTTTCCCATCTGATCCTGTGGCAGTT  700

seq1  CACCTCAGACAACTGACACTCCCTTTTGTGGCTCCCCTTTTCCCTGCTGC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAGACAACTGACACTCCCTTTTGTGGCTCCCCTTTTCCCTGCTGC  750

seq1  CCCCTCTCCTTGATCTAATGTCCCCTCCAGATCCCTTATTTTCCTCCCAG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCCTTGATCTAATGTCCCCTCCAGATCCCTTATTTTCCTCCCAG  800

seq1  GGAAATCTGCTTTGTCCTGGTTTGTCCCTGCAGATCCCTGAGGACAGAAG  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCTGCTTTGTCCTGGTTTGTCCCTGCAGATCCCTGAGGACAGAAG  850

seq1  TCTGGAGTGTAGATGGGATTCCTCTAGGGGACATTTTAGCATCTGGAAAT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTGTAGATGGGATTCCTCTAGGGGACATTTTAGCATCTGGAAAT  900

seq1  CACGGAGATGCTGAGAGACCATTTTGATTTTGCTGAATTACTTCTTGAGG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGAGATGCTGAGAGACCATTTTGATTTTGCTGAATTACTTCTTGAGG  950

seq1  GTGAATTCTTAGCGGTGACAGTTTTGGTAAATGGGTGAGGTCAGGCTTAC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTCTTAGCGGTGACAGTTTTGGTAAATGGGTGAGGTCAGGCTTAC  1000

seq1  CAGTGAATATATGAGGCAACCTCTGGGCAACTCTCTCCCAGGAGATGTTA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAATATATGAGGCAACCTCTGGGCAACTCTCTCCCAGGAGATGTTA  1050

seq1  GCATTCGGTGTTTTCCTGTTGTTCTTTAAGAATACGTAAATCATCCTCTT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCGGTGTTTTCCTGTTGTTCTTTAAGAATACGTAAATCATCCTCTT  1100

seq1  CAGATGTCCTCGTTTACATGCCTGTGATTTTTATTGTGAATTC  1128
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTCCTCGTTTACATGCCTGTGATTTTTATTGTGAATTC  1143

seq1: chr9_70645284_70645815
seq2: B6Ng01-328K22.g_66_597

seq1  GAATTCCATTCACTAGTTACTTATTTAAAAATTAAAATACCCACTGTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCACTAGTTACTTATTTAAAAATTAAAATACCCACTGTCCA  50

seq1  GCTTTCACTGCTATTGCTAGTGGGGCAATAGAATTCCTCTGTGTCCGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCACTGCTATTGCTAGTGGGGCAATAGAATTCCTCTGTGTCCGTTT  100

seq1  CAGTGAGATAGATGTGCGATACATGGGATGTGTGGGATGTAACTCCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGATAGATGTGCGATACATGGGATGTGTGGGATGTAACTCCTTTC  150

seq1  TGTGATCCACATTTTTTTTCTCTTTTAGGGAGCTGTATGTCTTGGCTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCCACATTTTTTTTCTCTTTTAGGGAGCTGTATGTCTTGGCTAAT  200

seq1  GCGCTGCTACCTGTCAGCAGGGGTTAATTGGGATTTTGTTTTATTGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGCTACCTGTCAGCAGGGGTTAATTGGGATTTTGTTTTATTGAATG  250

seq1  TCAATCATGTACTAAAGAAACATGATTCCTTTGTGGTTCAAAAATTGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCATGTACTAAAGAAACATGATTCCTTTGTGGTTCAAAAATTGGTC  300

seq1  AGAAAAAAGTAGCAAGGAATTATGGGGAAATTGACTTAACTGTAAAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAGTAGCAAGGAATTATGGGGAAATTGACTTAACTGTAAAAGAC  350

seq1  ACTGTCAATTAAAATAACAAGTCTAAAATGGCTCTTACATTTGAACGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAATTAAAATAACAAGTCTAAAATGGCTCTTACATTTGAACGTGT  400

seq1  TTGCACAGGTTAGCATCTAATCAGAGATAAAATTGTGAAATTTTTAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAGGTTAGCATCTAATCAGAGATAAAATTGTGAAATTTTTAGTGT  450

seq1  ACTAATACCTGGAGATAGTCCTATAACATTGTGTTTAAGCTCAGTTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATACCTGGAGATAGTCCTATAACATTGTGTTTAAGCTCAGTTTTAA  500

seq1  GACGGTTTTTACTGTGTGTGTGTGTGTGTGTG  532
      ||||||||||||||||||||||||||||||||
seq2  GACGGTTTTTACTGTGTGTGTGTGTGTGTGTG  532