BAC Information

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BAC

Clone NameB6Ng01-331K14
Chromosome9 (Build37)
Map Location 99,663,889 - 99,664,982
singlet/doubletsinglet
Overlap genenone
Upstream geneEG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429
Downstream geneSox14, LOC667456, 4930519F24Rik, LOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486, Stag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331K14.bB6Ng01-331K14.g
ACCGA117969GA117970
length1,1891,042
definitionB6Ng01-331K14.b B6Ng01-331K14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaatcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacataa
tacttgaagtattaaccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
taaatggcctttctctacacaaagaatgaataggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcg
tgacactaactaaggaagtgaaagatctgtatgataaaaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaggagcaattttcaaattcatctggaataacaaaaaacc
taggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacaaacaagtagaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcactttgatcttcgacaaggga
gctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctg
gcacaactgggttgttatcatgtagaagaatgcgaattgatccatattta
tctccttgttactaagtcaattcttaagtggatcaaggaactttcacaat
aaaatcagagaacactgaacttatagagggagaaagtgggggaaaggcct
gaagattatggcacagggcaaaatctgaccgaacagcatgctgtgctgtg
agatcaatatgacaattggttactattgaaaacttccta
gaattcaagaggtcttgaattaaagggtcacagcagtaggagggttgaga
accactggtctaatttgtgatggcagctgtgagattttattctttgcttt
aaattagccagatggtagtttcaattgctgacctatattgcggcatccta
ataataggtgaaaataaagcttaccgtttcacagttgagaaagcatggtc
ctcattccttgtctctaagaacagcaagttgtcttgtagccactagggag
cagtagtgactcactaatagtgtgtgtgcagcaccttcctctggggaaag
ccagcattagagactgtctgctaaccgatgaggaaactgagtcccacgga
ggacacattgttttctgaagtccgctcagggatgagtggtaagttttggc
attgagttcaagtttaagtttgtgatcactaatctaaaacacattgtaac
gcagaaaactgatctatttagctatctgaacataaatagtacgcgtgggt
ttcaaaaaaaaaaaaaaaaaaaaaagcccaggttattgaaaaaaaaaaag
ggataaggtccagtgtgttacttgtccttgtgtgtgctcaaaggtatcct
gaaccagagtagcatgagaaacctagggcactaggagggggaggaagaat
ttggagaattggcaagatcaagttcagagccaggctccctggtattaaag
attattatgagccaggcagtggtggcgcacgcctttaatcccagcacttg
ggaggcaaaggcaggcgaatttctgagtttgaggccagcctggtctacag
agtgagttccaggacagccagggctatacagagaaaccctgtctcaaaaa
tcaaaacaaaaacaaaacaacaaacaaacaaatcttgcgcacgctcaact
gggccaggaagaacgacgctgcaacagatccttccgcacacgtttatgga
gagcttgattgcagagcgaagagaccccaagcccagaactggtgctgctt
aatataggcctaggagaggcgtgaactcacacctgattggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_99663889_99664982
seq2: B6Ng01-331K14.g_69_1110

seq1  GAATTCAAGAGGTCTTGAATTAAAGGGTCACAGCAGTAGGAGGGTTGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGGTCTTGAATTAAAGGGTCACAGCAGTAGGAGGGTTGAGA  50

seq1  ACCACTGGTCTAATTTGTGATGGCAGCTGTGAGATTTTATTCTTTGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGGTCTAATTTGTGATGGCAGCTGTGAGATTTTATTCTTTGCTTT  100

seq1  AAATTAGCCAGATGGTAGTTTCAATTGCTGACCTATATTGCGGCATCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGCCAGATGGTAGTTTCAATTGCTGACCTATATTGCGGCATCCTA  150

seq1  ATAATAGGTGAAAATAAAGCTTACCGTTTCACAGTTGAGAAAGCATGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGGTGAAAATAAAGCTTACCGTTTCACAGTTGAGAAAGCATGGTC  200

seq1  CTCATTCCTTGTCTCTAAGAACAGCAAGTTGTCTTGTAGCCACTAGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCCTTGTCTCTAAGAACAGCAAGTTGTCTTGTAGCCACTAGGGAG  250

seq1  CAGTAGTGACTCACTAATAGTGTGTGTGCAGCACCTTCCTCTGGGGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTGACTCACTAATAGTGTGTGTGCAGCACCTTCCTCTGGGGAAAG  300

seq1  CCAGCATTAGAGACTGTCTGCTAACCGATGAGGAAACTGAGTCCCACGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATTAGAGACTGTCTGCTAACCGATGAGGAAACTGAGTCCCACGGA  350

seq1  GGACACATTGTTTTCTGAAGTCCGCTCAGGGATGAGTGGTAAGTTTTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACATTGTTTTCTGAAGTCCGCTCAGGGATGAGTGGTAAGTTTTGGC  400

seq1  ATTGAGTTCAAGTTTAAGTTTGTGATCACTAATCTAAAACACATTGTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTTCAAGTTTAAGTTTGTGATCACTAATCTAAAACACATTGTAAC  450

seq1  GCAGAAAACTGATCTATTTAGCTATCTGAACATAAATAGTACGCGTGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAACTGATCTATTTAGCTATCTGAACATAAATAGTACGCGTGGGT  500

seq1  TTCAAAAAAAAAAAAAAAAAAAAAAGCCCAGGTTATTGAAAAAAAAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAAAAAAAAAAAAAAAAAAAGCCCAGGTTATTGAAAAAAAAAAAG  550

seq1  GGATAAGGTCCAGTGTGTTACTTGTCCTTGTGTGTGCTCAAAGGTATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGGTCCAGTGTGTTACTTGTCCTTGTGTGTGCTCAAAGGTATCCT  600

seq1  GAACCAGAGTAGCATGAGAAACCTAGGGCACTAGGAGGGGGAGGAAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGAGTAGCATGAGAAACCTAGGGCACTAGGAGGGGGAGGAAGAAT  650

seq1  TTGGAGAATTGGCAAGATCAAGTTCAGAGCCAGGCTCCCTGGTATTAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAATTGGCAAGATCAAGTTCAGAGCCAGGCTCCCTGGTATTAAAG  700

seq1  ATTATTATGAGCCAGGCAGTGGTGGCGCACGCCTTTAATCCCAGCACTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATGAGCCAGGCAGTGGTGGCGCACGCCTTTAATCCCAGCACTTG  750

seq1  GGAGGCAAAGGCAGGCGAATTTCTGAGTTTGAGGCCAGCCTGGTCTACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAAAGGCAGGCGAATTTCTGAGTTTGAGGCCAGCCTGGTCTACAG  800

seq1  AGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAA  850

seq1  TCAAAAC-AAAACAAACAAACAAACAAACAAATCTTGCGCACGCTCAACT  899
      ||||||| ||||||||  ||||||||||||||||||||||||||||||||
seq2  TCAAAACAAAAACAAAACAACAAACAAACAAATCTTGCGCACGCTCAACT  900

seq1  -GGCCAGGAAGAACGACGCTGCAACAGGATCCTTCCGCACACGTTTATTG  948
       ||||||||||||||||||||||||| |||||||||||||||||||||  
seq2  GGGCCAGGAAGAACGACGCTGCAACA-GATCCTTCCGCACACGTTTAT--  947

seq1  GGAGAGCTTGATTGCAGAGGCGAAGAGACCCCAAGCCCAGAACTGGTGCT  998
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGAGAGCTTGATTGCAGA-GCGAAGAGACCCCAAGCCCAGAACTGGTGCT  996

seq1  GCTT-ATATAGGCCTAGGAGAGGCGTG-ACTCACACCTGGATTGGTTGTG  1046
      |||| |||||||||||||||||||||| |||||||||| ||||||||   
seq2  GCTTAATATAGGCCTAGGAGAGGCGTGAACTCACACCT-GATTGGTT---  1042

seq1  CTTGGGTTATGCTAATCACCTCATTTGCATGCCTATATCTGATTGGTT  1094
                                                      
seq2  ------------------------------------------------  1042