BAC Information

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BAC

Clone NameB6Ng01-333O18
Chromosome9 (Build37)
Map Location 92,672,082 - 92,673,235
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009
Downstream geneLOC100040114, LOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333O18.bB6Ng01-333O18.g
ACCGA119555GA119556
length1,1931,144
definitionB6Ng01-333O18.b B6Ng01-333O18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccctcatgtgctttaaatcaggcctgcaagctcatacaagagtct
ctctggtcttgaaaatgggagaccccagcatgctggacttctggactaaa
atattctttgtttttacatactatttgagtctggagtatcattcttgggt
gaatcatggacccttacagtatcatgaacattacaagagtaaaggggttg
tgaattcttccccatttaaggaatgccactgaggtagggaaatccctcct
gaaagtcgttacaaagactgttccacttagttgttaaagtgaaaactgag
ttgaattgaagatattagaggagataatgacatgggatatctgccaagga
gagttgacacatggagtagaaccaggacaagagaaataagtgagttgtag
ttcacacagttgggggagaagagccatctacataagccctttgatatcaa
tcagacaaggagctatgggatttggagtttgccctgctggcttgggtgtt
gctttggcccactagtttcccatcatatgctaattcctaccttttggaaa
ggtgaagcgtattctgtgctttcttctataaccgtaaactcgattaaaca
ctttcttttataagtggccttggtcagggagtttttgacagcagcaggaa
tatcctcagtacactgagtccagtgggtgacaccatattaaagaagagtc
aagctgcaaacacaggacatgtaaagaagtgagaaagtggagaagtgact
tctcctagtaagtcatttagatcccttcgcagaagtttccccagtagttt
cctggcacacactgtttactgatgatgaatacagctccagaactgagtgc
gtcagcatcaaaactaaaatatgcagaacctcaactctgaacttactgtt
aacagaaattgtaggcccagtaacttacatcgttgtttttattaattaaa
tgctaaatgaataatagaggaagccattaggaattaagacatcctataaa
tactaaatttaaatatggaatgtgaaaacgattttttttcttttggcaaa
aaaaaaaaaatctagcagaaattacagtcaactgaagataatcatagttc
aaagggaaggaagccccttagctagccgagactgaatcgagtaggcagat
acagatcaagttagagatatcagtctcctccatctaacagtgc

gaattcttggctgaaactgttgaatataataaaaactttatagtgaattt
tcaggtaagggtattgcttccacagagacaaattcaatgaacagttctaa
aaggacaagaatgagtgaaatgttaaaggtaaatgaaaataggctttaat
aaaatcagtgcatatactcagtctcattatctccagcttcttcactgagc
aggattcaagccagtcttcatgaaagatagtgtgtgtcccttaacactct
ctccttaaatgttattgagttctttgaaaggagtagttgggttgataata
aggaaaattacattgtacctccaaggtgatcatttgaggcatgaagaaaa
caagttagagcaaaagggaggtcttaccagccccatgttttataaggttt
gaaaatgcagaatggaggtacagttcagaggggcagagctttttcaatct
taacactgtaagaagttatgtaagctgcaaacaaattgagagatttacat
tttttttttttgtcaaaaggaaaattctaaagctttgtaagagaatccac
cagctgtgttggcaggtaaaacactagctgcccaaatgattttaaattcc
agagggacaaagattatttttgtcataagctggtctcatgcagttcttag
aatacacttatttttaaaatacattgctatttacctaagagtcaagtgga
acttaatattcttcatttttatctgctaaagctgagaacaataataccag
agggagtggaaggggcaatatgaagttccctaattcaagggcttcagtgt
attgcattgatttaattgtgagcaatacatcaatatgtctgccacagcca
acttgatttgtatagcactatttgaaagttttcttttcctccttggtgtg
ttgtatccataggaaatattgctgacataacaactcaattcaggacattt
agtgattctaaaaatactatataactagatgtagttaccaattacacaat
tataccattgcccttgtacagacatagtacaggcaaatgaccacctaaac
atagctttccaaatgatggatggatagaagcctacactactatggaataa
tacagccaagtagttcaagcacttaccaccaactttctatctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_92672082_92673235
seq2: B6Ng01-333O18.g_65_1208

seq1  GAATTCTTGGCTGAAACTGTTGAATATAATAAAAACTTTATAGTGAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGCTGAAACTGTTGAATATAATAAAAACTTTATAGTGAATTT  50

seq1  TCAGGTAAGGGTATTGCTTCCACAGAGACAAATTCAATGAACAGTTCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTAAGGGTATTGCTTCCACAGAGACAAATTCAATGAACAGTTCTAA  100

seq1  AAGGACAAGAATGAGTGAAATGTTAAAGGTAAATGAAAATAGGCTTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAAGAATGAGTGAAATGTTAAAGGTAAATGAAAATAGGCTTTAAT  150

seq1  AAAATCAGTGCATATACTCAGTCTCATTATCTCCAGCTTCTTCACTGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGTGCATATACTCAGTCTCATTATCTCCAGCTTCTTCACTGAGC  200

seq1  AGGATTCAAGCCAGTCTTCATGAAAGATAGTGTGTGTCCCTTAACACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCAAGCCAGTCTTCATGAAAGATAGTGTGTGTCCCTTAACACTCT  250

seq1  CTCCTTAAATGTTATTGAGTTCTTTGAAAGGAGTAGTTGGGTTGATAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAAATGTTATTGAGTTCTTTGAAAGGAGTAGTTGGGTTGATAATA  300

seq1  AGGAAAATTACATTGTACCTCCAAGGTGATCATTTGAGGCATGAAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATTACATTGTACCTCCAAGGTGATCATTTGAGGCATGAAGAAAA  350

seq1  CAAGTTAGAGCAAAAGGGAGGTCTTACCAGCCCCATGTTTTATAAGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTAGAGCAAAAGGGAGGTCTTACCAGCCCCATGTTTTATAAGGTTT  400

seq1  GAAAATGCAGAATGGAGGTACAGTTCAGAGGGGCAGAGCTTTTTCAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGCAGAATGGAGGTACAGTTCAGAGGGGCAGAGCTTTTTCAATCT  450

seq1  TAACACTGTAAGAAGTTATGTAAGCTGCAAACAAATTGAGAGATTTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTGTAAGAAGTTATGTAAGCTGCAAACAAATTGAGAGATTTACAT  500

seq1  TTTTTTTTTTTGTCAAAAGGAAAATTCTAAAGCTTTGTAAGAGAATCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTGTCAAAAGGAAAATTCTAAAGCTTTGTAAGAGAATCCAC  550

seq1  CAGCTGTGTTGGCAGGTAAAACACTAGCTGCCCAAATGATTTTAAATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTGTTGGCAGGTAAAACACTAGCTGCCCAAATGATTTTAAATTCC  600

seq1  AGAGGGACAAAGATTATTTTTGTCATAAGCTGGTCTCATGCAGTTCTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGACAAAGATTATTTTTGTCATAAGCTGGTCTCATGCAGTTCTTAG  650

seq1  AATACACTTATTTTTAAAATACATTGCTATTTACCTAAGAGTCAAGTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACTTATTTTTAAAATACATTGCTATTTACCTAAGAGTCAAGTGGA  700

seq1  ACTTAATATTCTTCATTTTTATCTGCTAAAGCTGAGAACAATAATACCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATATTCTTCATTTTTATCTGCTAAAGCTGAGAACAATAATACCAG  750

seq1  AGGGAGTGGAAGGGGCAATATGAAGTTCCCTAATTCAAGGGCTTCAGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTGGAAGGGGCAATATGAAGTTCCCTAATTCAAGGGCTTCAGTGT  800

seq1  ATTGCATTGATTTAATTGTGAGCAATACATCAATATGTCTGCCACAGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATTGATTTAATTGTGAGCAATACATCAATATGTCTGCCACAGCCA  850

seq1  ACTTGATTTGTATAGCACTATTTGAAAGTTTTCTTTTCCTCCTTGGTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATTTGTATAGCACTATTTGAAAGTTTTCTTTTCCTCCTTGGTGTG  900

seq1  TTGTATCCATAGGAAATATTGCTGACATAACAACTCAATTCAGGACATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCCATAGGAAATATTGCTGACATAACAACTCAATTCAGGACATTT  950

seq1  AGTGATTCTAAAAATACTATATAACTAGATGTAGTTACCAATTACACAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTCTAAAAATACTATATAACTAGATGTAGTTACCAATTACACAAT  1000

seq1  TATACCATTG-CCTTGTACCAGACATAGTACAGGCAAATGACCAACTAAA  1049
      |||||||||| ||||||| ||||||||||||||||||||||||| |||||
seq2  TATACCATTGCCCTTGTA-CAGACATAGTACAGGCAAATGACCACCTAAA  1049

seq1  CCATAGCTTTTCCAAATGATGGATGGATAGAAGGCCTACACTAACTATGG  1099
       |||||| |||||||||||||||||||||||| ||||||||| |||||||
seq2  -CATAGC-TTTCCAAATGATGGATGGATAGAA-GCCTACACT-ACTATGG  1095

seq1  GATAAATACAGCCCAAAGTAGGTTCCAAGCCAACTTTACCA-CAAC-TTC  1147
       || |||||||||  ||||||  | |||||  || |||||| |||| |||
seq2  AAT-AATACAGCC--AAGTAG--TTCAAGC--AC-TTACCACCAACTTTC  1137

seq1  TATCTGA  1154
      |||||||
seq2  TATCTGA  1144


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