BAC Information

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BAC

Clone NameB6Ng01-335E04
Chromosome9 (Build37)
Map Location 33,134,525 - 33,279,304
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335E04.bB6Ng01-335E04.g
ACCGA120546GA120547
length1,0911,011
definitionB6Ng01-335E04.b B6Ng01-335E04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,134,525 - 33,135,624)(33,278,294 - 33,279,304)
sequence
gaattcactggaactcatatagtctggccttgtggcaagtgtctttacct
actgagccattttgccagcctcaaatatttatttttaaaatgaatttagt
tatgattcattatcagaatatcagaatatgtttatttgtataactgtttt
gcatatgtcttttgtagtaagatataaaaaaattctttttcaaaagaaga
tttcaggtaaaaaccatttaaacagccttgctttaagtatctagtgtggc
ttcgccttatccttttttttctttttagaaactatttttcagttttacat
atgtccataatgcatattgacactctcatctcttaccctctcttacctcc
ccgtctacccaccttcttccccccaaatctccttttcacattcataatta
gttattttgctttgtgattcactaaatttaatcagggcctactgtgtgat
cacgggtttggagcctgatgggtaaagcttcctatgaactattgaaaaca
gtgttgccccacatcccagagtctcctcctagccagtagttcaggggtaa
gagggagggcctaatgagcctctgctccatccatgacagatcactggaca
gagccagtcttctgcatgctcaatacagacatctgaagttgctgtgagcc
catgattcatatctatctatcttcttctctcagttatctgaatgaagcaa
ggtgaccttgaattcagagctgtaagtctgaaggatgccagggtctaaat
acatgcttagagaagggctgggaagtctaggttgagctgtgtaagttgta
aattatttgtgtgtggtctccagttattatgacaaaatctatgctatctt
aaatcatagaaaaatttatactaaacatagtcttttatcataacaataac
aaaactcctaaaccatatggcatctgaatgagtcagaaagcaatgttaaa
aaaaaaagtactgagaggagctgagccaaccctgggacttactgagataa
ctaggcacagagagaagcaaacacacatgttctctacttacgaagtggga
aattcagtctcttgacacagagcatcacatgactaatcaga

gaattcatatcagtttttgaaaccaactctgttgaggaagctttttgata
gttttcacttacatgaagaatataggaaattaaattaagaggttctccat
tctctgctatctgggctatagatcaggtctcaggctggtggctgcctaat
gttggcaaaattatttggacaattcattcataacctgcctgttgatctgt
cagcacagaggtaagaactcatcactgttttggtatcagggattgagtgt
tcacgtgttcaagaatgctgggactcatgggtacacagcaatatccactg
cataggtttgcgagaaaggaatcattctgcttgctgacaatttgcttttc
ttctttggagctatgactattcacatcattattaatgcacatgtgcatgc
acatgtgtgtgtgggatatgtatattacctgttcatgtgtatgtgcacct
atgggtctgtgtgtgcccagggtaagagaccagaagctcacggcaaggat
ctttttctatcattggccaccatatttttgagactaggtctcttactgga
tctggagatctccaaatcaatttggctaacttgtctgctgtccagagatt
tccaggattagttctttctctacttctccagctctataggtaactgtcac
ccgtgagttctgagtatccaaactcaagtactttaccaactgagtcagta
atctttcttgcctcttggatttttaaaaagtattttagagttatttttat
aatctggatattaactctctattgtgtactcaaataatttctcacttttt
ggtcgttgtgtctgtccactgtttattttcccgtgaaaatatgtgacatg
agctaggcctttacccaaattttctattgtttgtttcctatgcttttagg
atcctatacagaaaaaaagttctttatacaaatacatgaaaaaaaacttt
aacatcattaatgatgaaaaaacatattataaaatcgcaatgtgaataca
atcgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_33134525_33135624
seq2: B6Ng01-335E04.b_42_1132

seq1  GAATTCACTGGAACTCATATAGTCTGGCCTTGTGGCAAGTGTCTTTACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGAACTCATATAGTCTGGCCTTGTGGCAAGTGTCTTTACCT  50

seq1  ACTGAGCCATTTTGCCAGCCTCAAATATTTATTTTTAAAATGAATTTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCCATTTTGCCAGCCTCAAATATTTATTTTTAAAATGAATTTAGT  100

seq1  TATGATTCATTATCAGAATATCAGAATATGTTTATTTGTATAACTGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTCATTATCAGAATATCAGAATATGTTTATTTGTATAACTGTTTT  150

seq1  GCATATGTCTTTTGTAGTAAGATATAAAAAAATTCTTTTTCAAAAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGTCTTTTGTAGTAAGATATAAAAAAATTCTTTTTCAAAAGAAGA  200

seq1  TTTCAGGTAAAAACCATTTAAACAGCCTTGCTTTAAGTATCTAGTGTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGTAAAAACCATTTAAACAGCCTTGCTTTAAGTATCTAGTGTGGC  250

seq1  TTCGCCTTATCCTTTTTTTTCTTTTTAGAAACTATTTTTCAGTTTTACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCCTTATCCTTTTTTTTCTTTTTAGAAACTATTTTTCAGTTTTACAT  300

seq1  ATGTCCATAATGCATATTGACACTCTCATCTCTTACCCTCTCTTACCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCATAATGCATATTGACACTCTCATCTCTTACCCTCTCTTACCTCC  350

seq1  CCGTCTACCCACCTTCTTCCCCCCAAATCTCCTTTTCACATTCATAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCTACCCACCTTCTTCCCCCCAAATCTCCTTTTCACATTCATAATTA  400

seq1  GTTATTTTGCTTTGTGATTCACTAAATTTAATCAGGGCCTACTGTGTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTGCTTTGTGATTCACTAAATTTAATCAGGGCCTACTGTGTGAT  450

seq1  CACGGGTTTGGAGCCTGATGGGTAAAGCTTCCTATGAACTATTGAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGTTTGGAGCCTGATGGGTAAAGCTTCCTATGAACTATTGAAAACA  500

seq1  GTGTTGCCCCACATCCCAGAGTCTCCTCCTAGCCAGTAGTTCAGGGGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCCCCACATCCCAGAGTCTCCTCCTAGCCAGTAGTTCAGGGGTAA  550

seq1  GAGGGAGGGCCTAATGAGCCTCTGCTCCATCCATGACAGATCACTGGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGGCCTAATGAGCCTCTGCTCCATCCATGACAGATCACTGGACA  600

seq1  GAGCCAGTCTTCTGCATGCTCAATACAGACATCTGAAGTTGCTGTGAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGTCTTCTGCATGCTCAATACAGACATCTGAAGTTGCTGTGAGCC  650

seq1  CATGATTCATATCTATCTATCTTCTTCTCTCAGTTATCTGAATGAAGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTCATATCTATCTATCTTCTTCTCTCAGTTATCTGAATGAAGCAA  700

seq1  GGTGACCTTGAATTCAGAGCTGTAAGTCTGAAGGATGCCAGGGTCTAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCTTGAATTCAGAGCTGTAAGTCTGAAGGATGCCAGGGTCTAAAT  750

seq1  ACATGCTTAGAGAAGGGCTGGGAAGTCTAGGTTGAGCTGTGTAAGTTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTTAGAGAAGGGCTGGGAAGTCTAGGTTGAGCTGTGTAAGTTGTA  800

seq1  AATTATTTGTGTGTGGTCTCCAGTTATTATGACAAAATCTATGCTATCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTGTGTGTGGTCTCCAGTTATTATGACAAAATCTATGCTATCTT  850

seq1  AAATCATAGAAAAATTTATACTAAACATAGTCTTTTATCATAACAATAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATAGAAAAATTTATACTAAACATAGTCTTTTATCATAACAATAAC  900

seq1  AAAACTCCTAAACCATATGGCATCTGAATGAGTCAGAAAGCAATGTTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCCTAAACCATATGGCATCTGAATGAGTCAGAAAGCAATGTTAAA  950

seq1  AAAAAAAGTACTGAGAGGAGCTGAGCCAACCCTGGGAACTTAACTGAGAT  1000
      |||||||||||||||||||||||||||||||||||| |||| ||||||||
seq2  AAAAAAAGTACTGAGAGGAGCTGAGCCAACCCTGGG-ACTT-ACTGAGAT  998

seq1  AAACTAGGCACAGAGAGAGGCAAACACAACATGTTCTCTTACTTACGGAA  1050
       ||||||||||||||||| |||||||| |||||||||| ||||||| |||
seq2  -AACTAGGCACAGAGAGAAGCAAACAC-ACATGTTCTC-TACTTAC-GAA  1044

seq1  GTGGGAAATTCAGTCTCTTGGAACAACAGAGCATCACAATGACT-ATCAG  1099
      ||||||||||||||||||||  || |||||||||||| |||||| |||||
seq2  GTGGGAAATTCAGTCTCTTG--AC-ACAGAGCATCAC-ATGACTAATCAG  1090

seq1  A  1100
      |
seq2  A  1091


seq1: chr9_33278294_33279304
seq2: B6Ng01-335E04.g_65_1075 (reverse)

seq1  ACACACACGATTGTA-TCACATTGCGATTTTAATATATGTTTTTTCAATC  49
      ||||||||||||||| ||||||||||||||||  |||||||||||| |||
seq2  ACACACACGATTGTATTCACATTGCGATTTTATAATATGTTTTTTC-ATC  49

seq1  ATTAATGATGTTAAAGTTTTTTTTCATGTATTTGTATAAAGAACTTTTTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGATGTTAAAGTTTTTTTTCATGTATTTGTATAAAGAACTTTTTT  99

seq1  TCTGTATAGGATCCTAAAAGCATAGGAAACAAACAATAGAAAATTTGGGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATAGGATCCTAAAAGCATAGGAAACAAACAATAGAAAATTTGGGT  149

seq1  AAAGGCCTAGCTCATGTCACATATTTTCACGGGAAAATAAACAGTGGACA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCTAGCTCATGTCACATATTTTCACGGGAAAATAAACAGTGGACA  199

seq1  GACACAACGACCAAAAAGTGAGAAATTATTTGAGTACACAATAGAGAGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAACGACCAAAAAGTGAGAAATTATTTGAGTACACAATAGAGAGTT  249

seq1  AATATCCAGATTATAAAAATAACTCTAAAATACTTTTTAAAAATCCAAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCAGATTATAAAAATAACTCTAAAATACTTTTTAAAAATCCAAGA  299

seq1  GGCAAGAAAGATTACTGACTCAGTTGGTAAAGTACTTGAGTTTGGATACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGAAAGATTACTGACTCAGTTGGTAAAGTACTTGAGTTTGGATACT  349

seq1  CAGAACTCACGGGTGACAGTTACCTATAGAGCTGGAGAAGTAGAGAAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTCACGGGTGACAGTTACCTATAGAGCTGGAGAAGTAGAGAAAGA  399

seq1  ACTAATCCTGGAAATCTCTGGACAGCAGACAAGTTAGCCAAATTGATTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATCCTGGAAATCTCTGGACAGCAGACAAGTTAGCCAAATTGATTTG  449

seq1  GAGATCTCCAGATCCAGTAAGAGACCTAGTCTCAAAAATATGGTGGCCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTCCAGATCCAGTAAGAGACCTAGTCTCAAAAATATGGTGGCCAA  499

seq1  TGATAGAAAAAGATCCTTGCCGTGAGCTTCTGGTCTCTTACCCTGGGCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAAAAAGATCCTTGCCGTGAGCTTCTGGTCTCTTACCCTGGGCAC  549

seq1  ACACAGACCCATAGGTGCACATACACATGAACAGGTAATATACATATCCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACCCATAGGTGCACATACACATGAACAGGTAATATACATATCCC  599

seq1  ACACACACATGTGCATGCACATGTGCATTAATAATGATGTGAATAGTCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATGTGCATGCACATGTGCATTAATAATGATGTGAATAGTCAT  649

seq1  AGCTCCAAAGAAGAAAAGCAAATTGTCAGCAAGCAGAATGATTCCTTTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAAAGAAGAAAAGCAAATTGTCAGCAAGCAGAATGATTCCTTTCT  699

seq1  CGCAAACCTATGCAGTGGATATTGCTGTGTACCCATGAGTCCCAGCATTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAACCTATGCAGTGGATATTGCTGTGTACCCATGAGTCCCAGCATTC  749

seq1  TTGAACACGTGAACACTCAATCCCTGATACCAAAACAGTGATGAGTTCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACACGTGAACACTCAATCCCTGATACCAAAACAGTGATGAGTTCTT  799

seq1  ACCTCTGTGCTGACAGATCAACAGGCAGGTTATGAATGAATTGTCCAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGTGCTGACAGATCAACAGGCAGGTTATGAATGAATTGTCCAAAT  849

seq1  AATTTTGCCAACATTAGGCAGCCACCAGCCTGAGACCTGATCTATAGCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGCCAACATTAGGCAGCCACCAGCCTGAGACCTGATCTATAGCCC  899

seq1  AGATAGCAGAGAATGGAGAACCTCTTAATTTAATTTCCTATATTCTTCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGCAGAGAATGGAGAACCTCTTAATTTAATTTCCTATATTCTTCAT  949

seq1  GTAAGTGAAAACTATCAAAAAGCTTCCTCAACAGAGTTGGTTTCAAAAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTGAAAACTATCAAAAAGCTTCCTCAACAGAGTTGGTTTCAAAAAC  999

seq1  TGATATGAATTC  1011
      ||||||||||||
seq2  TGATATGAATTC  1011


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