BAC Information

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BAC

Clone NameB6Ng01-339D06
Chromosome9 (Build37)
Map Location 10,558,779 - 10,599,880
singlet/doubletdoublet
Overlap genenone
Upstream geneCntn5, LOC665154, LOC100039970
Downstream geneLOC665178
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339D06.bB6Ng01-339D06.g
ACCGA123266GA123267
length1,1341,088
definitionB6Ng01-339D06.b B6Ng01-339D06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,558,779 - 10,559,918)(10,598,799 - 10,599,880)
sequence
gaattcacatttcttgtgcaatcaggtaataactcaaaatttcactacaa
cattgaatgtatttttccttgatgacattctactctaattattggtttgg
gaatgtgatgtaatgcctatgtttatgacctcagagtgtctcttggtatt
taataatcaattggagcattctcttgagaaaattgtttctcttgctctca
gaattcaccactttctcaaagctctttgtctggaattgaagccccttgag
cattgttaaccatggccattctcttcatttctggtttgtccttcacaatt
gtatctggacaggtggctgagccctcattgttcagactctcagaaagagc
ttttccactaaaactcaggtaacttcacttcttttcaactcaaagttttt
aagtcattttcacatgggctaatcttaggagtgtgttgataagtgagagg
gcagagagagattttggaaaaaggaggccatacttatagctagataagag
tggtattattttgaaagatagttgaatacgatggtgaccagcctggttgg
aaatttttatttctttttttcttttctcttctcttcttttttctttatct
ttttctttttttcaacttgacccaggctaggatgatctgagatgaggaaa
cctcaattttgaaatgccttcaccaattggcctatagacaagtctgtagg
gcattttcttgattgattgaaaactgacatgggaaggctcagtagtgaca
ctccagggcagttgttcctgggttgtatgagaaaagaatctgagaaaccc
atgaggtgcaaaccagtatacagtactctgctatggtctctgcttcagta
cctgcctccagggtcttcctatgagctgttgccctgactttcactgacag
agtatggtatcagagctttaggccaaaataaatcctttcccttctcaaat
tttctttaagctgtggtgtttttatcacagaaaagaaatcaggaatgaga
gagtgaccatggtaacatgctttatattcttcaacagatagagatattct
ataaaatattctatcccacaaatgtaccatatgaaagacatttcaagatc
ataatgcatacggcatagtctttgtgtctcagaa

gaattctgagaaagcactgagcaataataggttgttttcaaactgcattg
ctaatttctgtcctttcagatttagattctgtattttgatgaacatcagt
cttctagcagtaaatatgaataattgttgctttgaataattaaacctacc
tagccacaatctatggtgtgtggtcagtgtgctttcccttcctcagcact
ggatttttatgtttcagggatagttatgtaaaagaaaacaaaagcacaca
tggacaaacacaccttcacatatgtattcatgtgtgcacacagatctata
agcatgcatgcacacatgcatccatcaacagcaaatgctttacatttaag
aaaaaatatctgtcgatctcaaagaatggcaagataacagatgctagact
tccctcattcattactgataaaattatgcagtagtccagcaagttcagaa
aagttttttgtaggctaaataaagaagctgtaaatcagccattccattcc
taggtatttcctcaagataactatgtgcatgagacatgttcaagggtaca
tgaaagaagtctgttagtattggacagaaagaaggagggacacgatatcc
attaaaggcaagtgcgtaaacaacttttaaacccagaagcagaagctgca
tgatagagccttggtcccagcagtatgaactctttgattttgtgtctctc
aactttttgaacaagaaaatgacttatgtggttcaaataatgagaatcac
agtctccaaggtttaagtatagacaactgaactcatgagaaagtagacaa
catgaataaaaatggtgtgtgtgaagcataaatataagtaaaattctttt
cttcttaggaaaagtctatctcctatagtaaataataggaaagaatgttc
ataatgcctcttgttgggcattttgtacattttcaactcattccaaagaa
atagttttctttccatcttggggcttaaaatgctatttttatagtaaaag
aacaaattaggggtcatttcctatttataattaacctccatttttttttt
tttaagaattgggcttgttgtcacctgtaacttaacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_10558779_10559918
seq2: B6Ng01-339D06.b_46_1179

seq1  GAATTCACATTTCTTGTGCAATCAGGTAATAACTCAAAATTTCACTACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTTCTTGTGCAATCAGGTAATAACTCAAAATTTCACTACAA  50

seq1  CATTGAATGTATTTTTCCTTGATGACATTCTACTCTAATTATTGGTTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAATGTATTTTTCCTTGATGACATTCTACTCTAATTATTGGTTTGG  100

seq1  GAATGTGATGTAATGCCTATGTTTATGACCTCAGAGTGTCTCTTGGTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGATGTAATGCCTATGTTTATGACCTCAGAGTGTCTCTTGGTATT  150

seq1  TAATAATCAATTGGAGCATTCTCTTGAGAAAATTGTTTCTCTTGCTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATCAATTGGAGCATTCTCTTGAGAAAATTGTTTCTCTTGCTCTCA  200

seq1  GAATTCACCACTTTCTCAAAGCTCTTTGTCTGGAATTGAAGCCCCTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCACTTTCTCAAAGCTCTTTGTCTGGAATTGAAGCCCCTTGAG  250

seq1  CATTGTTAACCATGGCCATTCTCTTCATTTCTGGTTTGTCCTTCACAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTAACCATGGCCATTCTCTTCATTTCTGGTTTGTCCTTCACAATT  300

seq1  GTATCTGGACAGGTGGCTGAGCCCTCATTGTTCAGACTCTCAGAAAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGGACAGGTGGCTGAGCCCTCATTGTTCAGACTCTCAGAAAGAGC  350

seq1  TTTTCCACTAAAACTCAGGTAACTTCACTTCTTTTCAACTCAAAGTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCACTAAAACTCAGGTAACTTCACTTCTTTTCAACTCAAAGTTTTT  400

seq1  AAGTCATTTTCACATGGGCTAATCTTAGGAGTGTGTTGATAAGTGAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATTTTCACATGGGCTAATCTTAGGAGTGTGTTGATAAGTGAGAGG  450

seq1  GCAGAGAGAGATTTTGGAAAAAGGAGGCCATACTTATAGCTAGATAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGAGATTTTGGAAAAAGGAGGCCATACTTATAGCTAGATAAGAG  500

seq1  TGGTATTATTTTGAAAGATAGTTGAATACGATGGTGACCAGCCTGGTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTATTTTGAAAGATAGTTGAATACGATGGTGACCAGCCTGGTTGG  550

seq1  AAATTTTTATTTCTTTTTTTCTTTTCTCTTCTCTTCTTTTTTCTTTATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTATTTCTTTTTTTCTTTTCTCTTCTCTTCTTTTTTCTTTATCT  600

seq1  TTTTCTTTTTTTCAACTTGACCCAGGCTAGGATGATCTGAGATGAGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTTTTCAACTTGACCCAGGCTAGGATGATCTGAGATGAGGAAA  650

seq1  CCTCAATTTTGAAATGCCTTCACCAATTGGCCTATAGACAAGTCTGTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATTTTGAAATGCCTTCACCAATTGGCCTATAGACAAGTCTGTAGG  700

seq1  GCATTTTCTTGATTGATTGAAAACTGACATGGGAAGGCTCAGTAGTGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTCTTGATTGATTGAAAACTGACATGGGAAGGCTCAGTAGTGACA  750

seq1  CTCCAGGGCAGTTGTTCCTGGGTTGTATGAGAAAAGAATCTGAGAAACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGGCAGTTGTTCCTGGGTTGTATGAGAAAAGAATCTGAGAAACCC  800

seq1  ATGAGGTGCAAACCAGTATACAGTACTCTGCTATGGTCTCTGCTTCAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTGCAAACCAGTATACAGTACTCTGCTATGGTCTCTGCTTCAGTA  850

seq1  CCTGCCTCCAGGGTCTTCCTATGAGCTGTTGCCCTGACTTTCACTGACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCCAGGGTCTTCCTATGAGCTGTTGCCCTGACTTTCACTGACAG  900

seq1  AGTATGGTATCAGAGCTTTAGGCCAAAATAAATCCTTT-CCTTCTCAAA-  948
      |||||||||||||||||||||||||||||||||||||| |||||||||| 
seq2  AGTATGGTATCAGAGCTTTAGGCCAAAATAAATCCTTTCCCTTCTCAAAT  950

seq1  TTTCTTTAAGCTGTGGTG-TTTTATCACAGAAAAGAAATCAGGAATGAAG  997
      |||||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  TTTCTTTAAGCTGTGGTGTTTTTATCACAGAAAAGAAATCAGGAATG-AG  999

seq1  AGAGTGACCATGGTTAACAATGCTTTATATTCTTCAAAACAGAATAGAGA  1047
      ||||||||||||| |||| ||||||||||||||||  ||||| |||||||
seq2  AGAGTGACCATGG-TAAC-ATGCTTTATATTCTTC--AACAG-ATAGAGA  1044

seq1  ATATCTATAAAATATTCTATCCACAAAATGTAACCATATGAAAAGACATT  1097
         |||||||||||||||||||   |||||| |||||||| |||||||||
seq2  TATTCTATAAAATATTCTATCCCACAAATGT-ACCATATG-AAAGACATT  1092

seq1  TCAGGATCATTATGGCATAC-GCATAGTCTTTTGGTGCTCAGAA  1140
      ||| |||||| || |||||| |||||||||||  || |||||||
seq2  TCAAGATCATAAT-GCATACGGCATAGTCTTTGTGT-CTCAGAA  1134


seq1: chr9_10598799_10599880
seq2: B6Ng01-339D06.g_66_1153 (reverse)

seq1  TAGTTAAAGTTACAGGTGACACAAAGCCCAATTCTT-AAAAAAAAAAAAT  49
      ||||| |||||||||||||||  ||||||||||||| |||||||||||||
seq2  TAGTT-AAGTTACAGGTGACAACAAGCCCAATTCTTAAAAAAAAAAAAAT  49

seq1  GGAGGTTTAATTATAAATAGG-AATGA-CCCTAATTTGT--CTTTACTAT  95
      ||||| ||||||||||||||| ||||| |||||||||||   ||||||||
seq2  GGAGG-TTAATTATAAATAGGAAATGACCCCTAATTTGTTCTTTTACTAT  98

seq1  -AAAATAGCA-TTTAAG-CCCAAGATGG-AAGAAAACTATTTCTTTGGAA  141
       ||||||||| |||||| |||||||||| |||||||||||||||||||||
seq2  AAAAATAGCATTTTAAGCCCCAAGATGGAAAGAAAACTATTTCTTTGGAA  148

seq1  TGAGTTGAAAATGTACAAAATGCCAAACAAAGAGGCATTATGAACATTCT  191
      |||||||||||||||||||||||| ||| |||||||||||||||||||||
seq2  TGAGTTGAAAATGTACAAAATGCCCAAC-AAGAGGCATTATGAACATTCT  197

seq1  TTCCTATTATTTACTATAGGAGATAGACTTTTCCTAAGAAGAAAAGAATT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATTATTTACTATAGGAGATAGACTTTTCCTAAGAAGAAAAGAATT  247

seq1  TTACTTATATTTATGCTTCACACACACCATTTTTATTCATGTTGTCTACT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTATATTTATGCTTCACACACACCATTTTTATTCATGTTGTCTACT  297

seq1  TTCTCATGAGTTCAGTTGTCTATACTTAAACCTTGGAGACTGTGATTCTC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATGAGTTCAGTTGTCTATACTTAAACCTTGGAGACTGTGATTCTC  347

seq1  ATTATTTGAACCACATAAGTCATTTTCTTGTTCAAAAAGTTGAGAGACAC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTGAACCACATAAGTCATTTTCTTGTTCAAAAAGTTGAGAGACAC  397

seq1  AAAATCAAAGAGTTCATACTGCTGGGACCAAGGCTCTATCATGCAGCTTC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAAGAGTTCATACTGCTGGGACCAAGGCTCTATCATGCAGCTTC  447

seq1  TGCTTCTGGGTTTAAAAGTTGTTTACGCACTTGCCTTTAATGGATATCGT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGGGTTTAAAAGTTGTTTACGCACTTGCCTTTAATGGATATCGT  497

seq1  GTCCCTCCTTCTTTCTGTCCAATACTAACAGACTTCTTTCATGTACCCTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCCTTCTTTCTGTCCAATACTAACAGACTTCTTTCATGTACCCTT  547

seq1  GAACATGTCTCATGCACATAGTTATCTTGAGGAAATACCTAGGAATGGAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGTCTCATGCACATAGTTATCTTGAGGAAATACCTAGGAATGGAA  597

seq1  TGGCTGATTTACAGCTTCTTTATTTAGCCTACAAAAAACTTTTCTGAACT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGATTTACAGCTTCTTTATTTAGCCTACAAAAAACTTTTCTGAACT  647

seq1  TGCTGGACTACTGCATAATTTTATCAGTAATGAATGAGGGAAGTCTAGCA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGACTACTGCATAATTTTATCAGTAATGAATGAGGGAAGTCTAGCA  697

seq1  TCTGTTATCTTGCCATTCTTTGAGATCGACAGATATTTTTTCTTAAATGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTATCTTGCCATTCTTTGAGATCGACAGATATTTTTTCTTAAATGT  747

seq1  AAAGCATTTGCTGTTGATGGATGCATGTGTGCATGCATGCTTATAGATCT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTTGCTGTTGATGGATGCATGTGTGCATGCATGCTTATAGATCT  797

seq1  GTGTGCACACATGAATACATATGTGAAGGTGTGTTTGTCCATGTGTGCTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCACACATGAATACATATGTGAAGGTGTGTTTGTCCATGTGTGCTT  847

seq1  TTGTTTTCTTTTACATAACTATCCCTGAAACATAAAAATCCAGTGCTGAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCTTTTACATAACTATCCCTGAAACATAAAAATCCAGTGCTGAG  897

seq1  GAAGGGAAAGCACACTGACCACACACCATAGATTGTGGCTAGGTAGGTTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAAAGCACACTGACCACACACCATAGATTGTGGCTAGGTAGGTTT  947

seq1  AATTATTCAAAGCAACAATTATTCATATTTACTGCTAGAAGACTGATGTT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTCAAAGCAACAATTATTCATATTTACTGCTAGAAGACTGATGTT  997

seq1  CATCAAAATACAGAATCTAAATCTGAAAGGACAGAAATTAGCAATGCAGT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAATACAGAATCTAAATCTGAAAGGACAGAAATTAGCAATGCAGT  1047

seq1  TTGAAAACAACCTATTATTGCTCAGTGCTTTCTCAGAATTC  1082
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAACAACCTATTATTGCTCAGTGCTTTCTCAGAATTC  1088


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