BAC Information

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BAC

Clone NameB6Ng01-339F07
Chromosome9 (Build37)
Map Location 80,010,697 - 80,011,654
singlet/doubletsinglet
Overlap geneLOC100041249
Upstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6
Downstream geneMyo6, Impg1, EG666534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339F07.bB6Ng01-339F07.g
ACCGA123354GA123355
length9741,159
definitionB6Ng01-339F07.b B6Ng01-339F07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaactggacctggtgcctcgtgcttgtaattctagctactcggg
aagctgcatgttcaagaccagcatggtcagttagtaatatcctgtttcag
agagagatgggctataactaagtccacggtagaatacttgcctagcatgt
gaggccctgggttcaatccatatcaccacaaaaaaatggtaagggaaggg
tcaggcattcagagacgacccaaatgacttgatgaaaaagctaccttcca
ctgaacacatttcaaattcgtaagacagtaagtaaaattagggaaactaa
aaaagaggaaggaaaaccaagaaaggaagtaatttacagcaaccacagaa
atgtagctccaagattgccaaaagaaaaatctcaactatatcaaagattg
taaaataaactaaaaccaggggcagacttatttctcaaattccagtacta
aggtgagagagggggatagagggcaagcagaacccttggctcaccattgg
ctcaccctggccagccattctagcagaaaaggagagctctggactcactg
agaccccactacaaaaaataagaggatgaaagactgaagaagatgcttgt
gttggttaggttttttatctgttttgctttgttttatgtgggtttgtttt
gttttgtttggcaaaacttcatgcaagttagagtcgtctgaaagggaact
ttagtttttaaaaatcccccatcaaattaccctgtaggcaagcttatggg
acattttcttggttgattgataattgatggaattaattaatggaaggacc
cagtacactgtgaaaagtgtcattcctgggcaggtggtcccaggaaatat
aagaaagcaaactgaacaagccaggatgaataggccagtaagtaggaatt
ctccctttacctctgcacagtttcctgctttcaggttcctgttttgagtt
cctgtgatggaattgagagttgaa
gaattctttgggtgagagcaaggatttaaggtaaacttcctttgagaagc
attagttaataaaatactttccacttaggagacaatatacactgaaagat
taaaactcttggcttcttgtatagaagcagaaacaataaaaatttttctt
acataaggtaaagctatattaaccatacctagaggcaaaattttctagtg
attaccagttcaccagaagcaaaactctttgaatttaagcattattttaa
acatctgcaacactgttacaaagaaattttcttgaacacagggaaacact
ttctcaggcactgtttgcaaaacacaagaaggccacaagccgctctgggg
ctgcccagagccctgtattgactcaaacgtaaaatattttttaatctgag
catcctggccctcctgtaataaggactgattctagaggaacaatataact
gtgtacgcctctagcttttgatactctatcttaagatgacctacagttaa
aacgttcttcacaactttagtgttgtaaaaaacttgcccgtactgcagtt
tcctgccaggcagcaactatagccaaactgattgtttgaggggctaatct
attcacaaagacaaacttaactagataactctgtcacagttttgtatgaa
gtgagctgtattagcgctctcataagatgattgctcttgtaataatctta
attaacaaaatatgggtgagtagaaaatcttaaatttgcaatcaaactgc
atgctgcagtcagtggaacactggcaattttaaccataatttttaagttt
tcgttgcaatattagaatatatctataacttttggaaagcaaaacccaag
tttaaaaacaatttatcatctttaaaatcaatattagaagcattactatc
atattacgaagtttggctgccaattaaatacctatgaatacctaattaaa
gcaagctttaatgctttaataaaagaggcattgctttaaatcttatctta
aatttactatttaggataggaacacatattatatctaaactagaaaatat
ctttagagaccagctcttgctgcttatgccacgtgtcgacgacctctaac
ttgaatatcgataacctaccatctgtagccatgtaaccaagtccaatata
aatctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_80010697_80011654
seq2: B6Ng01-339F07.b_47_1005 (reverse)

seq1  CATCACAGGAACTCAAAACAGGAACCTGAAAGCAGG-AACTGTTGCAGAG  49
      |||||||||||||||||||||||||||||||||||| ||||| |||||||
seq2  CATCACAGGAACTCAAAACAGGAACCTGAAAGCAGGAAACTG-TGCAGAG  49

seq1  GTAAA-GGAGAATTCCTACTTACTGGCCTATTCATCCTGGCTTGTTCAGT  98
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGGAGAATTCCTACTTACTGGCCTATTCATCCTGGCTTGTTCAGT  99

seq1  TTGCTTTCTTATATTCCCTGGGACCACCTGCCCAGGAATGACACTTTTCA  148
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTGCTTTCTTATATTTCCTGGGACCACCTGCCCAGGAATGACACTTTTCA  149

seq1  CAGTGTACTGGGTCCTTCCATTAATTAATTCCATCAATTATCAATCAACC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTACTGGGTCCTTCCATTAATTAATTCCATCAATTATCAATCAACC  199

seq1  AAGAAAATGTCCCATAAGCTTGCCTACAGGGTAATTTGATGGGGGATTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATGTCCCATAAGCTTGCCTACAGGGTAATTTGATGGGGGATTTT  249

seq1  TAAAAACTAAAGTTCCCTTTCAGACGACTCTAACTTGCATGAAGTTTTGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACTAAAGTTCCCTTTCAGACGACTCTAACTTGCATGAAGTTTTGC  299

seq1  CAAACAAAACAAAACAAACCCACATAAAACAAAGCAAAACAGATAAAAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAACAAAACAAACCCACATAAAACAAAGCAAAACAGATAAAAAA  349

seq1  CCTAACCAACACAAGCATCTTCTTCAGTCTTTCATCCTCTTATTTTTTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACCAACACAAGCATCTTCTTCAGTCTTTCATCCTCTTATTTTTTGT  399

seq1  AGTGGGGTCTCAGTGAGTCCAGAGCTCTCCTTTTCTGCTAGAATGGCTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGTCTCAGTGAGTCCAGAGCTCTCCTTTTCTGCTAGAATGGCTGG  449

seq1  CCAGGGTGAGCCAATGGTGAGCCAAGGGTTCTGCTTGCCCTCTATCCCCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTGAGCCAATGGTGAGCCAAGGGTTCTGCTTGCCCTCTATCCCCC  499

seq1  TCTCTCACCTTAGTACTGGAATTTGAGAAATAAGTCTGCCCCTGGTTTTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCACCTTAGTACTGGAATTTGAGAAATAAGTCTGCCCCTGGTTTTA  549

seq1  GTTTATTTTACAATCTTTGATATAGTTGAGATTTTTCTTTTGGCAATCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTTACAATCTTTGATATAGTTGAGATTTTTCTTTTGGCAATCTT  599

seq1  GGAGCTACATTTCTGTGGTTGCTGTAAATTACTTCCTTTCTTGGTTTTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTACATTTCTGTGGTTGCTGTAAATTACTTCCTTTCTTGGTTTTCC  649

seq1  TTCCTCTTTTTTAGTTTCCCTAATTTTACTTACTGTCTTACGAATTTGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTTTTTAGTTTCCCTAATTTTACTTACTGTCTTACGAATTTGAA  699

seq1  ATGTGTTCAGTGGAAGGTAGCTTTTTCATCAAGTCATTTGGGTCGTCTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTCAGTGGAAGGTAGCTTTTTCATCAAGTCATTTGGGTCGTCTCT  749

seq1  GAATGCCTGACCCTTCCCTTACCATTTTTTTGTGGTGATATGGATTGAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCTGACCCTTCCCTTACCATTTTTTTGTGGTGATATGGATTGAAC  799

seq1  CCAGGGCCTCACATGCTAGGCAAGTATTCTACCGTGGACTTAGTTATAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCCTCACATGCTAGGCAAGTATTCTACCGTGGACTTAGTTATAGC  849

seq1  CCATCTCTCTCTGAAACAGGATATTACTAACTGACCATGCTGGTCTTGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTCTCTGAAACAGGATATTACTAACTGACCATGCTGGTCTTGAA  899

seq1  CATGCAGCTTCCCGAGTAGCTAGAATTACAAGCACGAGGCACCAGGTCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGCTTCCCGAGTAGCTAGAATTACAAGCACGAGGCACCAGGTCCA  949

seq1  GTTTGAATTC  958
      ||||||||||
seq2  GTTTGAATTC  959