BAC Information

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BAC

Clone NameB6Ng01-345I10
Chromosome9 (Build37)
Map Location 61,160,818 - 61,161,929
singlet/doubletsinglet
Overlap genenone
Upstream geneThsd4, LOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143, A430102L10
Downstream geneLOC100040481, Tle3, LOC100039851, Rplp1, Kif23, Paqr5, Glce, Spesp1, LOC100039897
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345I10.g
ACCGA127693
length1,107
definitionB6Ng01-345I10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaagcacacaccgaagtcaagcacacaggcaacctgtggcctcc
ggattggccacttcttctgaagccataacccgcctgggacatagtggaca
gtatatttatttgtggccatccaaagaggaagctctatgggggagcccgt
gtaatcaagctctctttttaaatcttagttcctggactcactctggattg
cagacatctgcatgtgtcagtctgctgtgaaggtctgagctggctgtgga
cgaacagggagagaaggttctcagaacatagtcccacttagaggagaccc
tgagagtcgcaaagcaataaacgggcctgccatttccccaagcccaactc
gtacagactgatgttttatttgatggccaaactgatttcattttctttaa
gagatattctcccaggggctagagagacagacagctcgctgggtaaagtg
tttgccaggcaagcgtgaggtcctgggtttggatccccagcatcctggta
aaatctgggcagagccgtgcccatttgtaatcctagcactggtcctagga
ggaggtggagatgccaggctccctgtgcagcccgcagctagccatgccca
ccagtgagctctaggctcagcgaaagccctgcctcaaaatgtaaagccat
tgaggaagacatgcaaggttctctcttttgtcctttatataagcatacat
gggcacactcacccgcaaacatacgtgcacacagacatatatgccataca
gcattcattccttggaatatattgctaaggaaaaccgctcaggcgcccct
ttacatcagccatgggaaccattttcccatgagccattggcagggcaggg
gttactatttctgctcagatcaaataagtttctacaataacatgtttgca
ggatgtgttatatatggtgtgttttgtcgcagctcgtaaatttccagctc
ccttacccttgaacataaggaaaaaacagggctgataaggaaaggcagag
aatgtgatacagggcaccgagtacccttaaaccaggatcaaatacctgat
ggagctgacccattcctgggaaggtggctctccatgaactgatgactaaa
gcatacc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_61160818_61161929
seq2: B6Ng01-345I10.g_65_1171 (reverse)

seq1  GGTATGCCTTTAGTCATCAGTTCATGGAGAGCCAC--TTCCAGGAAAGGG  48
      |||||| ||||||||||||||||||||||||||||  | ||||||| |||
seq2  GGTATG-CTTTAGTCATCAGTTCATGGAGAGCCACCTTCCCAGGAATGGG  49

seq1  TTCAGCTTCCATTCAGGTATTTGATTCTGGTTTTAAAGGTTAACTCGGTG  98
       ||||| |||| ||||||||||||| |||||||  |||| | ||||||||
seq2  -TCAGC-TCCA-TCAGGTATTTGATCCTGGTTT--AAGGGT-ACTCGGTG  93

seq1  CCCTGTTATCAACATTCTCTGCCTTTTCTTTATTCAGCCCTGTTTTT--C  146
      ||||| |||| ||||||||||||||| |||   ||||||||||||||  |
seq2  CCCTG-TATC-ACATTCTCTGCCTTTCCTT--ATCAGCCCTGTTTTTTCC  139

seq1  TTATTGTTCAA-GGTAAGGGAGCTGG-AATTTACGAGCTGCGACAAAACA  194
      ||| ||||||| |||||||||||||| |||||||||||||||||||||||
seq2  TTA-TGTTCAAGGGTAAGGGAGCTGGAAATTTACGAGCTGCGACAAAACA  188

seq1  CACCATATATAACACATCCTGCAAACATGTTATTGTAGAAACTTATTTGA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATATATAACACATCCTGCAAACATGTTATTGTAGAAACTTATTTGA  238

seq1  TCTGAGCAGAAATAGTAACCCCTGCCCTGCCAATGGCTCATGGGAAAATG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCAGAAATAGTAACCCCTGCCCTGCCAATGGCTCATGGGAAAATG  288

seq1  GTT-CCATGGCTGATGTAAAGGGGCGCCTGAGCGGTTTTCCTTAGCAATA  343
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCATGGCTGATGTAAAGGGGCGCCTGAGCGGTTTTCCTTAGCAATA  338

seq1  TATTCCAAGGAATGAATGCTGTATGGCATATATGTCTGTGTGCACGTATG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAAGGAATGAATGCTGTATGGCATATATGTCTGTGTGCACGTATG  388

seq1  TTTGCGGGTGAGTGTGCCCATGTATGCTTATATAAAGGACAAAAGAGAGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCGGGTGAGTGTGCCCATGTATGCTTATATAAAGGACAAAAGAGAGA  438

seq1  ACCTTGCATGTCTTCCTCAATGGCTTTACATTTTGAGGCAGGGCTTTCGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCATGTCTTCCTCAATGGCTTTACATTTTGAGGCAGGGCTTTCGC  488

seq1  TGAGCCTAGAGCTCACTGGTGGGCATGGCTAGCTGCGGGCTGCACAGGGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTAGAGCTCACTGGTGGGCATGGCTAGCTGCGGGCTGCACAGGGA  538

seq1  GCCTGGCATCTCCACCTCCTCCTAGGACCAGTGCTAGGATTACAAATGGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCATCTCCACCTCCTCCTAGGACCAGTGCTAGGATTACAAATGGG  588

seq1  CACGGCTCTGCCCAGATTTTACCAGGATGCTGGGGATCCAAACCCAGGAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCTCTGCCCAGATTTTACCAGGATGCTGGGGATCCAAACCCAGGAC  638

seq1  CTCACGCTTGCCTGGCAAACACTTTACCCAGCGAGCTGTCTGTCTCTCTA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGCTTGCCTGGCAAACACTTTACCCAGCGAGCTGTCTGTCTCTCTA  688

seq1  GCCCCTGGGAGAATATCTCTTAAAGAAAATGAAATCAGTTTGGCCATCAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGGGAGAATATCTCTTAAAGAAAATGAAATCAGTTTGGCCATCAA  738

seq1  ATAAAACATCAGTCTGTACGAGTTGGGCTTGGGGAAATGGCAGGCCCGTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACATCAGTCTGTACGAGTTGGGCTTGGGGAAATGGCAGGCCCGTT  788

seq1  TATTGCTTTGCGACTCTCAGGGTCTCCTCTAAGTGGGACTATGTTCTGAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTTTGCGACTCTCAGGGTCTCCTCTAAGTGGGACTATGTTCTGAG  838

seq1  AACCTTCTCTCCCTGTTCGTCCACAGCCAGCTCAGACCTTCACAGCAGAC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCTCTCCCTGTTCGTCCACAGCCAGCTCAGACCTTCACAGCAGAC  888

seq1  TGACACATGCAGATGTCTGCAATCCAGAGTGAGTCCAGGAACTAAGATTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACATGCAGATGTCTGCAATCCAGAGTGAGTCCAGGAACTAAGATTT  938

seq1  AAAAAGAGAGCTTGATTACACGGGCTCCCCCATAGAGCTTCCTCTTTGGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGAGCTTGATTACACGGGCTCCCCCATAGAGCTTCCTCTTTGGA  988

seq1  TGGCCACAAATAAATATACTGTCCACTATGTCCCAGGCGGGTTATGGCTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACAAATAAATATACTGTCCACTATGTCCCAGGCGGGTTATGGCTT  1038

seq1  CAGAAGAAGTGGCCAATCCGGAGGCCACAGGTTGCCTGTGTGCTTGACTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAAGTGGCCAATCCGGAGGCCACAGGTTGCCTGTGTGCTTGACTT  1088

seq1  CGGTGTGTGCTTGGAATTC  1112
      |||||||||||||||||||
seq2  CGGTGTGTGCTTGGAATTC  1107