BAC Information

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BAC

Clone NameB6Ng01-346I03
Chromosome9 (Build37)
Map Location 107,247,103 - 107,378,144
singlet/doubletdoublet
Overlap gene6430571L13Rik, Cacna2d2
Upstream geneWdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet, Dock3, Mapkapk3, Cish, Hemk1
Downstream geneTmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346I03.bB6Ng01-346I03.g
ACCGA128385GA128386
length513812
definitionB6Ng01-346I03.b B6Ng01-346I03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,377,627 - 107,378,144)(107,247,103 - 107,247,912)
sequence
taagggtaacctgtccgtagtcgatggctccaagcagcccctgcctgagg
gttcaactgtcacctctgcctacttccatccaccttgcctgccacaccct
catctctcacatgctgcatcctgagtgggcaacaccaccatgcattttac
tagtctgagccctgcagttggacagtgcctgggtgggaataaaacaggca
aattctcttgggaagagactctatgaggtctgtgcagtccctttttcctg
gcatgagttgagctctgacatcttcagctcgattcactgatttccgttta
cttagcaggctggggctggaatgtattaaggggggagggtgtcactgctt
gtggggggagggaggcaaagctgacctatgagatgttcctacacctaata
agtctctctctaccctaaccctttccaccctttcctggaatagaaaaagg
tgatcagaaaatatgacagatgtaatagtttacgaaatgaattaattaca
tgggagtcacaca
gaattcactgtatagaccaggctggcctcaaactcagagatctgcctttg
tctcctgagtgctgagattaaaggcatgggccaccaccacccagccaggc
tgtccatattcttgatagttagaaattgccaatttgggactggagagatg
acagcggttaggggtactgactgctcttccagaagaccctggttcaattc
ccagcatccacatggcagctcacaactgtctgttgtttaactccaagatc
tgaccacctcacatagacatacgtgcaggcaaaaacataccaacatgcat
aaaattaaaaaaaaatggcagtttggggaagagcagatggtggcagtagt
ccccggagtccctgtgcaggcatgggctccaaatatcacccacttcctcc
ctggtgccaaggcttcctgcctctgcctgtgggttctaggtataattcta
gttgtaatcttttttttaatttattttttattaggtattttcctcgttta
cattttcaatgctatcccaaaagtcccccatacccacccccctaatcccc
tacccacccactccccctttttggccctggggttcccctgtactggggca
tataaagttttacaagtccaatgggcctctctttgcagtgatggccgact
aggccatctttttgatacatatgcagctagagactagttgtaatcttttt
acttttgtgtctggacaaggggtggaaggtcccagggaccttcttaggtt
cctctagcatcagggctcctgaggggtgaccctggggctcaggggtgcag
ggctctgagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_107377627_107378144
seq2: B6Ng01-346I03.b_48_566 (reverse)

seq1  TGTGTGACTACCATGTAATTAGTTCATTTCGTAAACTATTACATCTGTCA  50
      ||||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  TGTGTGACTCCCATGTAATTAATTCATTTCGTAAACTATTACATCTGTCA  50

seq1  TATTTTCTGTTCACCTTTTTCTCTTCCAGGAAAGGGTGGAAAGGGTTAGG  100
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  TATTTTCTGATCACCTTTTTCTATTCCAGGAAAGGGTGGAAAGGGTTAGG  100

seq1  GTAGAGAGAGACTT-CTGGGTGTAGGAACATCTCATAGGTCAGCTTTGCC  149
      ||||||||||||||  | ||||||||||||||||||||||||||||||||
seq2  GTAGAGAGAGACTTATTAGGTGTAGGAACATCTCATAGGTCAGCTTTGCC  150

seq1  TCCCTCCCCCCACAAGCAGTGACACCCTCCCCCCTTAATACATTCCAGCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCCCCACAAGCAGTGACACCCTCCCCCCTTAATACATTCCAGCC  200

seq1  CCAGCCTGCTAAGTAAACGGAAATCAGTGAATCGAGCTGAAGATGTCAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGCTAAGTAAACGGAAATCAGTGAATCGAGCTGAAGATGTCAGA  250

seq1  GCTCAACTCATGCCAGGAAAAAGGGACTGCACAGACCTCATAGAGTCTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAACTCATGCCAGGAAAAAGGGACTGCACAGACCTCATAGAGTCTCT  300

seq1  TCCCAAGAGAATTTGCCTGTTTTATTCCCACCCAGGCACTGTCCAACTGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGAGAATTTGCCTGTTTTATTCCCACCCAGGCACTGTCCAACTGC  350

seq1  AGGGCTCAGACTAGTAAAATGCATGGTGGTGTTGCCCACTCAGGATGCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCAGACTAGTAAAATGCATGGTGGTGTTGCCCACTCAGGATGCAG  400

seq1  CATGTGAGAGATGAGGGTGTGGCAGGCAAGGTGGATGGAAGTAGGCAGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAGAGATGAGGGTGTGGCAGGCAAGGTGGATGGAAGTAGGCAGAG  450

seq1  GTGACAGTTGAACCCTCAGGCAGGGGCTGCTTGGAGCCATCGACTACGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGTTGAACCCTCAGGCAGGGGCTGCTTGGAGCCATCGACTACGGA  500

seq1  CAGGTTACCCTTAGAATTC  518
      |||||||||||||||||||
seq2  CAGGTTACCCTTAGAATTC  519

seq1: chr9_107247103_107247912
seq2: B6Ng01-346I03.g_71_882

seq1  GAATTCACTGTATAGACCAGGCTGGCCTCAAACTCAGAGATCTGCCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTATAGACCAGGCTGGCCTCAAACTCAGAGATCTGCCTTTG  50

seq1  TCTCCTGAGTGCTGAGATTAAAGGCATGGGCCACCACCACCCAGCCAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGAGTGCTGAGATTAAAGGCATGGGCCACCACCACCCAGCCAGGC  100

seq1  TGTCCATATTCTTGATAGTTAGAAATTGCCAATTTGGGACTGGAGAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATATTCTTGATAGTTAGAAATTGCCAATTTGGGACTGGAGAGATG  150

seq1  ACAGCGGTTAGGGGTACTGACTGCTCTTCCAGAAGACCCTGGTTCAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGGTTAGGGGTACTGACTGCTCTTCCAGAAGACCCTGGTTCAATTC  200

seq1  CCAGCATCCACATGGCAGCTCACAACTGTCTGTTGTTTAACTCCAAGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATCCACATGGCAGCTCACAACTGTCTGTTGTTTAACTCCAAGATC  250

seq1  TGACCACCTCACATAGACATACGTGCAGGCAAAAACATACCAACATGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACCTCACATAGACATACGTGCAGGCAAAAACATACCAACATGCAT  300

seq1  AAAATTAAAAAAAAATGGCAGTTTGGGGAAGAGCAGATGGTGGCAGTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAAAAAAAATGGCAGTTTGGGGAAGAGCAGATGGTGGCAGTAGT  350

seq1  CCCCGGAGTCCCTGTGCAGGCATGGGCTCCAAATATCACCCACTTCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGAGTCCCTGTGCAGGCATGGGCTCCAAATATCACCCACTTCCTCC  400

seq1  CTGGTGCCAAGGCTTCCTGCCTCTGCCTGTGGGTTCTAGGTATAATTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCCAAGGCTTCCTGCCTCTGCCTGTGGGTTCTAGGTATAATTCTA  450

seq1  GTTGTAATCTTTTTTTTAATTTATTTTTTATTAGGTATTTTCCTCGTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAATCTTTTTTTTAATTTATTTTTTATTAGGTATTTTCCTCGTTTA  500

seq1  CATTTTCAATGCTATCCCAAAAGTCCCCCATACCCACCCCCCTAATCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCAATGCTATCCCAAAAGTCCCCCATACCCACCCCCCTAATCCCC  550

seq1  TACCCACCCACTCCCCCTTTTTGGCCCTGGGGTTCCCCTGTACTGGGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACCCACTCCCCCTTTTTGGCCCTGGGGTTCCCCTGTACTGGGGCA  600

seq1  TATAAAG-TTTACAAGTCCAATGGGCCTCTCTTTGCAGTGATGGCCGACT  649
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGTTTTACAAGTCCAATGGGCCTCTCTTTGCAGTGATGGCCGACT  650

seq1  AGGCCATC-TTTTGATACATATGCAGCTAGAGACTAGTTGTAATCTTTTT  698
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATCTTTTTGATACATATGCAGCTAGAGACTAGTTGTAATCTTTTT  700

seq1  ACTTTTGTGTCTGGACAAGGGGTGGAAGGTCCCAGGGACCTTCTTAGGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTGTCTGGACAAGGGGTGGAAGGTCCCAGGGACCTTCTTAGGTT  750

seq1  CCTCTAGCATCAGGGCTCCTGAGGGGTGACCCTGGGGCTCAGGGGTGCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGCATCAGGGCTCCTGAGGGGTGACCCTGGGGCTCAGGGGTGCAG  800

seq1  GGCTCTGAGGGG  810
      ||||||||||||
seq2  GGCTCTGAGGGG  812