BAC Information

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BAC

Clone NameB6Ng01-348P22
Chromosome9 (Build37)
Map Location 30,127,652 - 30,231,991
singlet/doubletdoublet
Overlap genenone
Upstream geneHnt
Downstream geneSnx19, LOC666478, Adamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348P22.bB6Ng01-348P22.g
ACCGA130113GA130114
length1,111362
definitionB6Ng01-348P22.b B6Ng01-348P22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,230,885 - 30,231,991)(30,127,652 - 30,128,019)
sequence
gaattcacacaaaagacagaggcttagaggagctagccaaggtcagcagc
atgagtctctcatggcattaatgtatgttgttcagttgttctctcctcag
atgctttgctcctcagcgtagaagagaagcaaacaggattggagcatgta
gcaatgtttagaatagagagaaatggcaaagagtcaggcccgtaacaccc
cgagaagtgaggtgctaaaacttaaaactatgctgtctaggtacacgggc
aatgaatgagagccaggagagggacagtcggctgtgagaacgtactcaag
tgtaataagagtagtatatgtgcaaaccagaaaaaggctcatgggaaact
agagatcagtccaggggagtttctgattgctgatctgtcaagctgccatg
agccttgccactcacatcgacaccatttatcctcttacagtttggggagt
tagcagtctcaaatggattggcagaagtgtgctcacccaggaggctagaa
aaaagattgtgctttccagttctttgcagtgtccaggggacacctgtgct
ctctggctcctgctctcacatcctgccacctctgctcctctgcttcttca
gtcatgtccctttcctatccctgactctcctgccttcttataaggactgt
tgtgattacaccagaccctcccctgtaattcagaactatcttcccctccc
aagatccttaacctcacctccaagctcaccagtgaagcaacgcgacctca
gagcgtgtgagtcagcagggaagacattgtgtgggctacaacagagctaa
agtgtgtacagatgaaaggagttttgatggtttcgtttgagtgcagtcaa
atgggtttctgaagtaagatatgaagacattacgagggattttaaatctc
tttttaaaagtctcaagcccactttatagcccacacatttatgattctgg
tgcctctgcctctccaatacagggattacaggtgtgcaccatagtggcct
ggggtggagtctaggtttataagtggtatgatcaaatttttttaataaag
cagatggtgaaagttgaatagaaaaagtacctattaatgctaatgatcag
aagtgtgcagg

ttcagtaaagcaatttgagtctagagatttctgttgccaggagtttttac
atcatgaactcaatttctccaacagttccagggttattccctgtaattac
ccatttcatatggagagagctatggtagtttgtggtatgtctgtagctat
agggttgtttttgtatcagtagttacttttctgttgctgtgataagatac
caggaccaaagcagcttaaggaagaaaaggtctactctggcttgtggctc
caaagaaaagagaggacatcatagccagaaggtatggtgtgcctgaagag
cagggagctgacagatcacattttcatccacatacaggaaagggaggggg
aagggggaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_30230885_30231991
seq2: B6Ng01-348P22.b_46_1156 (reverse)

seq1  CCTGCAACTTTCTGATCATTAGCATTTATTAGTAACTTTTCTATCAAACT  50
      ||||||   ||||||||||||||||| ||  |||  ||||||||  ||||
seq2  CCTGCACACTTCTGATCATTAGCATTAATAGGTACTTTTTCTATTCAACT  50

seq1  TTCACCATCTGCTTTATTAAAAAAA-TTGATCATACCACTTATAAACCTA  99
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTCACCATCTGCTTTATTAAAAAAATTTGATCATACCACTTATAAACCTA  100

seq1  GACTC--ACCCAGG-CACTATGGTGCACACCTGTAATCCCTGTATTGGAG  146
      |||||   |||||| |||||||||||||||||||||||||||||||||||
seq2  GACTCCACCCCAGGCCACTATGGTGCACACCTGTAATCCCTGTATTGGAG  150

seq1  AGGCAGAGGCACCAGAATCATAAATGTGTGGGCTATAAAGTGGGCTTGAG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGCACCAGAATCATAAATGTGTGGGCTATAAAGTGGGCTTGAG  200

seq1  ACTTTTAAAAAGAGATTTAAAATCCCTCGTAATGTCTTCATATCTTACTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAAAAAGAGATTTAAAATCCCTCGTAATGTCTTCATATCTTACTT  250

seq1  CAGAAACCCATTTGACTGCACTCAAACGAAACCATCAAAACTCCTTTCAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCCATTTGACTGCACTCAAACGAAACCATCAAAACTCCTTTCAT  300

seq1  CTGTACACACTTTAGCTCTGTTGTAGCCCACACAATGTCTTCCCTGCTGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACACACTTTAGCTCTGTTGTAGCCCACACAATGTCTTCCCTGCTGA  350

seq1  CTCACACGCTCTGAGGTCGCGTTGCTTCACTGGTGAGCTTGGAGGTGAGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACGCTCTGAGGTCGCGTTGCTTCACTGGTGAGCTTGGAGGTGAGG  400

seq1  TTAAGGATCTTGGGAGGGGAAGATAGTTCTGAATTACAGGGGAGGGTCTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGATCTTGGGAGGGGAAGATAGTTCTGAATTACAGGGGAGGGTCTG  450

seq1  GTGTAATCACAACAGTCCTTATAAGAAGGCAGGAGAGTCAGGGATAGGAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATCACAACAGTCCTTATAAGAAGGCAGGAGAGTCAGGGATAGGAA  500

seq1  AGGGACATGACTGAAGAAGCAGAGGAGCAGAGGTGGCAGGATGTGAGAGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACATGACTGAAGAAGCAGAGGAGCAGAGGTGGCAGGATGTGAGAGC  550

seq1  AGGAGCCAGAGAGCACAGGTGTCCCCTGGACACTGCAAAGAACTGGAAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCAGAGAGCACAGGTGTCCCCTGGACACTGCAAAGAACTGGAAAG  600

seq1  CACAATCTTTTTTCTAGCCTCCTGGGTGAGCACACTTCTGCCAATCCATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCTTTTTTCTAGCCTCCTGGGTGAGCACACTTCTGCCAATCCATT  650

seq1  TGAGACTGCTAACTCCCCAAACTGTAAGAGGATAAATGGTGTCGATGTGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTGCTAACTCCCCAAACTGTAAGAGGATAAATGGTGTCGATGTGA  700

seq1  GTGGCAAGGCTCATGGCAGCTTGACAGATCAGCAATCAGAAACTCCCCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAAGGCTCATGGCAGCTTGACAGATCAGCAATCAGAAACTCCCCTG  750

seq1  GACTGATCTCTAGTTTCCCATGAGCCTTTTTCTGGTTTGCACATATACTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATCTCTAGTTTCCCATGAGCCTTTTTCTGGTTTGCACATATACTA  800

seq1  CTCTTATTACACTTGAGTACGTTCTCACAGCCGACTGTCCCTCTCCTGGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATTACACTTGAGTACGTTCTCACAGCCGACTGTCCCTCTCCTGGC  850

seq1  TCTCATTCATTGCCCGTGTACCTAGACAGCATAGTTTTAAGTTTTAGCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTCATTGCCCGTGTACCTAGACAGCATAGTTTTAAGTTTTAGCAC  900

seq1  CTCACTTCTCGGGGTGTTACGGGCCTGACTCTTTGCCATTTCTCTCTATT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTCTCGGGGTGTTACGGGCCTGACTCTTTGCCATTTCTCTCTATT  950

seq1  CTAAACATTGCTACATGCTCCAATCCTGTTTGCTTCTCTTCTACGCTGAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACATTGCTACATGCTCCAATCCTGTTTGCTTCTCTTCTACGCTGAG  1000

seq1  GAGCAAAGCATCTGAGGAGAGAACAACTGAACAACATACATTAATGCCAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAGCATCTGAGGAGAGAACAACTGAACAACATACATTAATGCCAT  1050

seq1  GAGAGACTCATGCTGCTGACCTTGGCTAGCTCCTCTAAGCCTCTGTCTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACTCATGCTGCTGACCTTGGCTAGCTCCTCTAAGCCTCTGTCTTT  1100

seq1  TGTGTGAATTC  1107
      |||||||||||
seq2  TGTGTGAATTC  1111


seq1: chr9_30127652_30128019
seq2: B6Ng01-348P22.g_67_434

seq1  GAATTCTTCAGTAAAGCAATTTGAGTCTAGAGATTTCTGTTGCCAGGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGTAAAGCAATTTGAGTCTAGAGATTTCTGTTGCCAGGAGT  50

seq1  TTTTACATCATGAACTCAATTTCTCCAACAGTTCCAGGGTTATTCCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATCATGAACTCAATTTCTCCAACAGTTCCAGGGTTATTCCCTGT  100

seq1  AATTACCCATTTCATATGGAGAGAGCTATGGTAGTTTGTGGTATGTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCCATTTCATATGGAGAGAGCTATGGTAGTTTGTGGTATGTCTGT  150

seq1  AGCTATAGGGTTGTTTTTGTATCAGTAGTTACTTTTCTGTTGCTGTGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAGGGTTGTTTTTGTATCAGTAGTTACTTTTCTGTTGCTGTGATA  200

seq1  AGATACCAGGACCAAAGCAGCTTAAGGAAGAAAAGGTCTACTCTGGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCAGGACCAAAGCAGCTTAAGGAAGAAAAGGTCTACTCTGGCTTG  250

seq1  TGGCTCCAAAGAAAAGAGAGGACATCATAGCCAGAAGGTATGGTGTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCAAAGAAAAGAGAGGACATCATAGCCAGAAGGTATGGTGTGCCT  300

seq1  GAAGAGCAGGGAGCTGACAGATCACATTTTCATCCACATACAGGAAAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCAGGGAGCTGACAGATCACATTTTCATCCACATACAGGAAAGGG  350

seq1  AGGGGGAAGGGGGAAAGG  368
      ||||||||||||||||||
seq2  AGGGGGAAGGGGGAAAGG  368


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