BAC Information

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BAC

Clone NameB6Ng01-349M17
Chromosome9 (Build37)9 (Build37)
Map Location 39,042,320 - 39,043,54838,966,554 - 38,967,716
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOlfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944
Downstream geneOlfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349M17.bB6Ng01-349M17.g
ACCGA130676GA130677
length1,0741,177
definitionB6Ng01-349M17.b B6Ng01-349M17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,042,320 - 39,043,548)(38,966,554 - 38,967,716)
sequence
gctctctaagtctatattttacctttactgctccagacccttctgggtaa
ctcttccagggctgctttaccctttgcacctgaatttctgccatcaagga
atggtctgtcctacacccctctcatattggactctcttcttctgcctctg
ctgtatttcttgcatcagaatactaaatatcttgcctctgtctctgtgcc
cagccattggctgcttgaaactttatttcccaatcaaaaccaaggacaca
gaaccataatgtcctgtaaacatatatacaaattcccatgtggtatggaa
aattactcaatctctactatcctattataatgaaactaagaaactaggaa
acaaacaaacaaaactcaaatgcaaatttcagatttcaacttatcttatt
aagataaaatcgagaatataaaatacaaatatgtacatatacatatatat
caagaggatgttgagaaatgttaactaaactttgtccacttttgaaattt
ttgttaactgctgcagcttctattgaatttgctgtggtggtataaataag
taagtaagagtgtaaacaagccaatagatagatagatagatagatagata
gatagatagatagatagatatatagatagatagataaagtaacatatgac
cctgaaatttcagtctttggcctatgaccaaagacttgattctacacaac
agttaactgctcagccatacttcatctgctattctcaagagcaaagaagt
ggaagtgaactaaatgaactatacataattgagtgatcatgaaaatagag
tagaattttatgtaggtgtcaagaaaaataagaatttgaaattttcatgt
aaataagtgaaactagaaaagattgatggtggtgactcagagccagaaag
acaaacaacactgctctccaaaggagaactgacaatatcaagcaccccat
tctgagatgaagaaaagtgggaaaatagattattgagacagaatatgtct
tcctattgagtatatatggattaaagagaagacgtcattaattgagagat
agcagagtgaccatgggatggttg
gaattctctacgaaggcagagtctcagctgccttcttcctcctctttata
ggaatttatgtgttcactgtggttggaacttttgcaagatcacattgatt
tgggaaagttccaacctgtacacacccatgtactatttcctcagcagtat
atacttcacttaactctgccattccatggtagttatccaaaacatctttt
gaactttgttatagaagacagctctatctctcaccctcagtaaatgactc
gactctattttgttctcaatttcatgattgcaaagtgtcacttgttatct
ccattttcatatgacccctatgttgccatttttaacacttttgtttacaa
catgaccatattctctcaggtttccagtttccagatttcagaagtacata
ttattagtgtagtttttacatcagctcacacaggttacatgatctgtgta
cagcttagtaacatagacatggtcaaccaccatttctatgttctccttac
cccagaaagcttctccactcatgttaaagttctttttttcattaaagttt
tctttttattgatttttcattattattaaatattttacttagttactttt
aattctattcaattcatgcattaatttatagttcttatttcaaagatttt
tttattttatgctttggaacatttatcaatgttgccccaacttgaatttt
ctcactctttacttcattattgttggcttgttcatcaacatttctctgaa
aaagccttcagtacatattggtcccttatcttggttgtgctgtgtttctt
gtgtctgctgaattcatgtacttcatcatcttcaaagatcaagggaaagt
atccttcatgttacactattgctgcgcccatagttatcacccttgatcta
caacccaagggaataagtatatctgtattgcccttgaagaaaatactaga
aagaaaataattaatatcaattgaagtaatatagatttacttattaaaat
ataatcatcaactgatataatttttcatttgcaattattcattttaatca
atttattgatctaaacatgttcttctgaactgaataatattctaagtttc
tgtggtggtccaattacttgtttcttaaataaaaggtggtaaatgtggac
tttttagggtagaaactatttccagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_39042320_39043548
seq2: B6Ng01-349M17.b_61_1120

seq1  TATTTTACCTTTGCTGTTCCAGACCCTTCTGGGTAACTCTCCCAGGGCTG  50
      |||||||||||| ||| ||||||||||||||||||||||| |||||||||
seq2  TATTTTACCTTTACTGCTCCAGACCCTTCTGGGTAACTCTTCCAGGGCTG  50

seq1  CTTTACCCTTTGCACCTGAATTTCTGCCATCGAGGAGTGGTCTGTCCTAC  100
      ||||||||||||||||||||||||||||||| |||| |||||||||||||
seq2  CTTTACCCTTTGCACCTGAATTTCTGCCATCAAGGAATGGTCTGTCCTAC  100

seq1  ACCGTTCTCATAGTGGACTCTCTTCTTCTGCCTCTCCTGTATTTCTTGCA  150
      |||  ||||||| |||||||||||||||||||||| ||||||||||||||
seq2  ACCCCTCTCATATTGGACTCTCTTCTTCTGCCTCTGCTGTATTTCTTGCA  150

seq1  TCAAAATCCTAAATGTCTTGCCTCTCTCTCTGTGCCCAGCCATTGGCTGC  200
      ||| ||| |||||| |||||||||| ||||||||||||||||||||||||
seq2  TCAGAATACTAAATATCTTGCCTCTGTCTCTGTGCCCAGCCATTGGCTGC  200

seq1  ATGAAACTTTATTTCCCAATCAAAACCAAAGACGCAAAACCATAGTGTCT  250
       |||||||||||||||||||||||||||| ||| || ||||||| |||| 
seq2  TTGAAACTTTATTTCCCAATCAAAACCAAGGACACAGAACCATAATGTCC  250

seq1  TGTAAACAGATATAAAAATTCTCATGTGATATGGAAAATTATTCAATCCC  300
      |||||||| ||||| |||||| |||||| |||||||||||| |||||| |
seq2  TGTAAACATATATACAAATTCCCATGTGGTATGGAAAATTACTCAATCTC  300

seq1  TACAATTCCATTGTAATGAAACCAACAAAATAGGAAACAAACAAACAAAA  350
      ||| || | ||| ||||||||| || ||| ||||||||||||||||||||
seq2  TACTATCCTATTATAATGAAACTAAGAAACTAGGAAACAAACAAACAAAA  350

seq1  CTCAAATGCAAATTTCAGATTTCAACTTTTCCTATTCAGAAAAAATCAAG  400
      |||||||||||||||||||||||||||| || |||| ||| |||||| ||
seq2  CTCAAATGCAAATTTCAGATTTCAACTTATCTTATTAAGATAAAATCGAG  400

seq1  AATATAAAATACAAATATGTACATATATATGCATATTCATATACATATCA  450
      |||||||||||||||||||||||||||          |||||  ||||||
seq2  AATATAAAATACAAATATGTACATATA----------CATAT--ATATCA  438

seq1  AGAGGATGTTGAGATATGGTAAATAAACTTCATCCTTTATTGAAATTTTT  500
      |||||||||||||| ||| ||| |||||||  |||  | |||||||||||
seq2  AGAGGATGTTGAGAAATGTTAACTAAACTTTGTCCACTTTTGAAATTTTT  488

seq1  GTTAACTGCTGCAGCTACTATTGAATTTGCTGTGGTGTGTTAAATAAGTA  550
      |||||||||||||||| ||||||||||||||||||||   ||||||||||
seq2  GTTAACTGCTGCAGCTTCTATTGAATTTGCTGTGGTGGTATAAATAAGTA  538

seq1  ACTAAGAGTGTAAACAAGCCAATAGATAGATAGATAGATAGATAGATAGA  600
      | ||||||||||||||||||||||||||||||||||||||||||      
seq2  AGTAAGAGTGTAAACAAGCCAATAGATAGATAGATAGATAGATA------  582

seq1  TAGATAGACCGATAGATAGATAGATGATGATAGTAGATAGATAGATAGAT  650
                                                        
seq2  --------------------------------------------------  582

seq1  AGATAGATAGATAGATAGATAGATAAAAAGATGATAGATAGATAGATAGA  700
                                                        
seq2  --------------------------------------------------  582

seq1  TAGATAGATAGATAGATAGAAAGAAAGATGATAGATAGATAGATAGATAG  750
                                   |||||||||||||||||||||
seq2  -----------------------------GATAGATAGATAGATAGATAG  603

seq1  ATAGATAGATAGATAGATAGAGTAACATATGACCCTGAAATTTCAGTATT  800
      ||| ||||||||||||||| ||||||||||||||||||||||||||| ||
seq2  ATATATAGATAGATAGATAAAGTAACATATGACCCTGAAATTTCAGTCTT  653

seq1  TGGCCTATGACCAAAGCCTTGACATTCTACAAAACAGTTAACTGCTCAGA  850
      |||||||||||||||| ||||  |||||||| ||||||||||||||||| 
seq2  TGGCCTATGACCAAAGACTTG--ATTCTACACAACAGTTAACTGCTCAGC  701

seq1  CATATTTCATCTACTGCTATTCTCAAGAGCAAAGAAGTGGAAGTG-ACTT  899
      |||| |||||   |||||||||||||||||||||||||||||||| ||| 
seq2  CATACTTCAT---CTGCTATTCTCAAGAGCAAAGAAGTGGAAGTGAACTA  748

seq1  AATGAACTATAATTAAGTGATCATGTGTAATTAAGTGATCATGAAAATAG  949
      |||||||||||          ||    ||||| |||||||||||||||||
seq2  AATGAACTATA----------CA----TAATTGAGTGATCATGAAAATAG  784

seq1  AGTGGAATTTTAGGTAGGTATCAA-AAAAATAAGAATTTGAAATTTTCAT  998
      ||| |||||||| |||||| |||| |||||||||||||||||||||||||
seq2  AGTAGAATTTTATGTAGGTGTCAAGAAAAATAAGAATTTGAAATTTTCAT  834

seq1  GTAAATAAATGAAACTAGAAAAGATTGATGGAGGTGACTCAGAGCCAGAA  1048
      |||||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  GTAAATAAGTGAAACTAGAAAAGATTGATGGTGGTGACTCAGAGCCAGAA  884

seq1  AGACAAACAACACTGCTCTCCAAAGGAGAACTGACAAACATCAAGCACCC  1098
      ||||||||||||||||||||||||||||||||||| || |||||||||||
seq2  AGACAAACAACACTGCTCTCCAAAGGAGAACTGAC-AATATCAAGCACCC  933

seq1  CATTCTGAGATGAAGAACAGTGGGAAAATAAGAATTATTGAGAACAGAAT  1148
      ||||||||||||||||| ||||||||||||   ||||||||| |||||||
seq2  CATTCTGAGATGAAGAAAAGTGGGAAAATA--GATTATTGAG-ACAGAAT  980

seq1  GTGTCTTCCTA-CGGGTATACATGGATTAAAGGAGAAGAGGCCATTAATT  1197
       ||||||||||  | ||||| |||||||||| ||||||| | ||||||||
seq2  ATGTCTTCCTATTGAGTATATATGGATTAAA-GAGAAGACGTCATTAATT  1029

seq1  GAGAGATAGCAGAGTGACCATGCGAATGGTTG  1229
      |||||||||||||||||||||| | |||||||
seq2  GAGAGATAGCAGAGTGACCATG-GGATGGTTG  1060

seq1: chr9_38966554_38967716
seq2: B6Ng01-349M17.g_68_1244

seq1  GAATTCTCTACGAAGGCAGAGTCTCAGCTGCCTTCTTCCTCCTCTTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACGAAGGCAGAGTCTCAGCTGCCTTCTTCCTCCTCTTTATA  50

seq1  GGAATTTATGTGTTCACTGTGGTTGGAACTTTTGCAAGATCACATTGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTATGTGTTCACTGTGGTTGGAACTTTTGCAAGATCACATTGATT  100

seq1  TGGGAAAGTTCCAACCTGTACACACCCATGTACTATTTCCTCAGCAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGTTCCAACCTGTACACACCCATGTACTATTTCCTCAGCAGTAT  150

seq1  ATACTTCACTTAACTCTGCCATTCCATGGTAGTTATCCAAAACATCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCACTTAACTCTGCCATTCCATGGTAGTTATCCAAAACATCTTTT  200

seq1  GAACTTTGTTATAGAAGACAGCTCTATCTCTCACCCTCAGTAAATGACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTGTTATAGAAGACAGCTCTATCTCTCACCCTCAGTAAATGACTC  250

seq1  GACTCTATTTTGTTCTCAATTTCATGATTGCAAAGTGTCACTTGTTATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTATTTTGTTCTCAATTTCATGATTGCAAAGTGTCACTTGTTATCT  300

seq1  CCATTTTCATATGACCCCTATGTTGCCATTTTTAACACTTTTGTTTACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCATATGACCCCTATGTTGCCATTTTTAACACTTTTGTTTACAA  350

seq1  CATGACCATATTCTCTCAGGTTTCCAGTTTCCAGATTTCAGAAGTACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCATATTCTCTCAGGTTTCCAGTTTCCAGATTTCAGAAGTACATA  400

seq1  TTATTAGTGTAGTTTTTACATCAGCTCACACAGGTTACATGATCTGTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGTGTAGTTTTTACATCAGCTCACACAGGTTACATGATCTGTGTA  450

seq1  CAGCTTAGTAACATAGACATGGTCAACCACCATTTCTATGTTCTCCTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTAGTAACATAGACATGGTCAACCACCATTTCTATGTTCTCCTTAC  500

seq1  CCCAGAAAGCTTCTCCACTCATGTTAAAGTTCTTTTTTTCATTAAAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAAGCTTCTCCACTCATGTTAAAGTTCTTTTTTTCATTAAAGTTT  550

seq1  TCTTTTTATTGATTTTTCATTATTATTAAATATTTTACTTAGTTACTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTATTGATTTTTCATTATTATTAAATATTTTACTTAGTTACTTTT  600

seq1  AATTCTATTCAATTCATGCATTAATTTATAGTTCTTATTTCAAAGATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTATTCAATTCATGCATTAATTTATAGTTCTTATTTCAAAGATTTT  650

seq1  TTTATTTTATGCTTTGGAACATTTATCAATGTTGCCCCAACTTGAATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTATGCTTTGGAACATTTATCAATGTTGCCCCAACTTGAATTTT  700

seq1  CTCACTCTTTACTTCATTATTGTTGGCTTGTTCATCAACATTTCTCTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTTTACTTCATTATTGTTGGCTTGTTCATCAACATTTCTCTGAA  750

seq1  AAAGCCTTCAGTACATATTGGTCCCTTATCTTGGTTGTGCTGTGTTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTTCAGTACATATTGGTCCCTTATCTTGGTTGTGCTGTGTTTCTT  800

seq1  GTGTCTGCTGAATTCATGTACTTCATCATCTTCAAAGATCAAGGGAAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGCTGAATTCATGTACTTCATCATCTTCAAAGATCAAGGGAAAGT  850

seq1  ATCCTTCATGTTACACTATTGCTGCGCCCATAGTTATCA-CCTTGATCTA  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATCCTTCATGTTACACTATTGCTGCGCCCATAGTTATCACCCTTGATCTA  900

seq1  CAACCCAA-GGAATAAGTATATCTGTATTG-CCTTGAAGAAAATACTAGA  947
      |||||||| ||||||||||||||||||||| |||||||||||||||||||
seq2  CAACCCAAGGGAATAAGTATATCTGTATTGCCCTTGAAGAAAATACTAGA  950

seq1  AAGAAAATAATTAATATCAATTGAAGTAATATAGATTTACTTATTAAAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATAATTAATATCAATTGAAGTAATATAGATTTACTTATTAAAAT  1000

seq1  ATAATCATCAACTGATAT-ATTTTTCAATTGCAATTATTCATTTTAATCA  1046
      |||||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  ATAATCATCAACTGATATAATTTTTCATTTGCAATTATTCATTTTAATCA  1050

seq1  ATTTATTGATCTAAACATG-TCTTCTGAAACTTGAAT-ATA-TCTAA-TT  1092
      ||||||||||||||||||| |||||||||   ||||| ||| ||||| ||
seq2  ATTTATTGATCTAAACATGTTCTTCTGAA--CTGAATAATATTCTAAGTT  1098

seq1  TCTGTG--TGTCC-ATTAC-TGTTTCTTATTTAAAA-GTGGTAAATGTGG  1137
      ||||||   |||| ||||| |||||||||  ||||| |||||||||||||
seq2  TCTGTGGTGGTCCAATTACTTGTTTCTTAAATAAAAGGTGGTAAATGTGG  1148

seq1  A-TTTTTA-GGTAG-AACTATTCCCAGTT  1163
      | |||||| ||||| ||||||| ||||||
seq2  ACTTTTTAGGGTAGAAACTATTTCCAGTT  1177