Query= MSMg01no045_f06.b1 MSMg01no045_f06.b1 CHROMAT_FILE:
MSMg01no045_f06.b1 PHD_FILE: MSMg01no045_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:15 2005
(398 letters)
>mm_chr9_68780643_68781440
Length = 798
Score = 379 bits (196), Expect = e-109
Identities = 305/398 (76%), Gaps = 86/398 (21%)
Strand = Plus / Minus
Query: 1 caaagaagccaggcatagagctatgcacttgtagtcccagtgccagggagggagagacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 caaagaagccaggcatagagctatgcacttgtagtcccagtgccagggagggagagacag 621
Query: 61 aggtaaaactggagcttgccacagctagcagtgagttagtccccgccctgtcccaccccc 120
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aggtaaaactggagcttgccacagctagcagtgagttagtccccgcc------------- 574
Query: 121 agcagtgagattgccccaccccatgtccccctgcacaccctatcactgagctagcagtga 180
Sbjct: 574 ------------------------------------------------------------ 574
Query: 181 gatagtcgctgctctgtcccacccccagcagtgagatagtccccgcctcatgccccctcc 240
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 -------------ctgtcccacccccagcagtgagatagtccccgcctcatgccccctcc 527
Query: 241 catgaaggccccatcacagagctagccgtgagatagttcccctttatgcccctgtcatgc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 526 catgaaggccccatcacagagctagccgtgagatagttcccctttatgcccctgccatgc 467
Query: 301 ctgcaatatgatcttcagacactctgttttctgctttctgatccccccccacctcttcag 360
|||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct: 466 ctgcaatatgatcttcagacactctgttttctgctttctgattcccctttagctcttcag 407
Query: 361 atcccaaagtcagatcgtcctggccctgggatcctcac 398
|||||||||||||||| |||||||||||||||||||||
Sbjct: 406 atcccaaagtcagatcttcctggccctgggatcctcac 369
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space: 306921
Effective search space used: 306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_f06.g1 MSMg01no045_f06.g1 CHROMAT_FILE:
MSMg01no045_f06.g1 PHD_FILE: MSMg01no045_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:15 2005
(380 letters)
>mm_chr9_68638931_68639711
Length = 781
Score = 658 bits (340), Expect = 0.0
Identities = 369/388 (95%), Gaps = 17/388 (4%)
Strand = Plus / Plus
Query: 1 atggggtctcagaaattcagggcacagagaattccacactctgaacattttctgggtttg 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggggtctcagaaatgcagggcacagagaattccacactctgaacattttctgggtttg 260
Query: 61 acataagttccttttttttt-catatttgacaatgtcctaagcctcataagcgagtctta 119
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acataagttccttttttttttcatatttgacaatgtcctaagcctcataagcgagtctta 320
Query: 120 tatttgctaatgaccatgattcttgtaattagctttttttctataggggatggtcacata 179
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttgctaatgaccatgattcttataattagctttttttctataggggatggtcacata 380
Query: 180 aaggtaaacaatatggtgactatatctttgttgtatccatggaaatcatcattgatgatt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggtaaacaatatggtgactatatctttgttgtatccatggaaatcatcattgatgatt 440
Query: 240 tattaagaatcctttctcctgatctccaaacagtacattgtgctggcccatgttccttga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattaagaatcctttctcctgatctccaaacagtacattgtgctggcccatgttccttga 500
Query: 300 agaatatatatgcttttcttatcagataaatcagctttagcccccgcc--------atat 351
|||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 agaatatatatgcttttcttatcagataaatcagctttag--------ttttgtttatat 552
Query: 352 tttggtttcttcaactgttttgacagtg 379
||||||||||||||||||||||||||||
Sbjct: 553 tttggtttcttcaactgttttgacagtg 580
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 781
Length adjustment: 9
Effective length of query: 371
Effective length of database: 772
Effective search space: 286412
Effective search space used: 286412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
