CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGCCCAAGACTGCAGAAGGAGAGTGTTCCACTGTGAGTTTTACACCCA
CTAAAGGAACCGCTAAGGAATAAAATAGTATTTCCTATGACGCCATTACT
TCTCTTCATTGTTTGTAAACCTCTCCCAGGCACCTTAAATATGCAAGCAA
TACGGAGGCGAGACAAACACTAAATACCCGTGGTTCTGAGGTAGTGTCTT
AAGGTCCTTTGGCTCAGTACCAGACTCTAAGGTGATGCAGGTGTCATGCC
TTTGGGCCAGGTACTTTCTGACACATGTCACTGGATATGGAACGCCCATC
AGGAAAGGACAGGGTGGTTGTTTCATAAACCCAAGTGCAGGATTATAACA
CAGACAGCTGAGCCTTGCTATCCGAACGAGGTCAGGCAAAAGAGCCATCT
CACCTTAGCCGGTCCTCCTCCTTTTTGCGAAGATTGAAGTCTCTCTGCAC
CACTTGGAGAACGTGCTCGGTCTCATCGTCGGTCAGACCCGACAGGTCCA
GCTTCCTCCCCATGATCAGAGTTAAACACGGACAACTGAACTAGATCTGC
GGAGTGAAAGGAGAGATCAGAGACTGAGGACAGGCTCGAGTTCAGTGTGG
CTCAAATCCACCCTCAACCCTGACTTAGACCA

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CCCCTTTTGGGGNNNNNNNCCCGAATGCAGTGGGAAGGCCTGGGTGGCCG
CCTCGGTCTCCCTACATATTAGGTGATGCTATAGTAAGGATCTCGCGGCA
ATTCTCTCTTGTACCGTTGACTCCCGTACTGTCTTTCCTACTTCTTGTTG
TCTAGATTCTGCCCCTCGTCGCAGCACTCCTGTGCTGCCCCCCGGCTTAA
CGTTCTGACTGGCTCCTTCCGCTGGATCGCTGTACCTTGATATCGCCGCT
GCCTCTCTCTCATCCGACCGCCTCCTTTCCGATATACGATCATCCGGCGC
GCAACCTCCGCCTTCGTCTTCTTCGTTTCTTATCTCTCACACTCTTCTTC
TTTTCTCTCCTTTTTTGGTCTTTGTTTTCCGTGTCCTCTCGCGCCGCTCT
TCGTTCTCCGTTGGTCCGTATGCTGGTGCCGTCGTTCCATAGTTCGAATG
TCGCCCTATCGATACGTCATTTATTGTCCTATAATTTGTCTCGATTTCTC
TCTCCTTGATTATATGGTCAATAAGGACTTACACGCGGAGCAGATTGCGA
CTTCGTATAGTCCACTAAGTTCCTCTCCGCTTCATCCCTTCCTGTTTTCT
CTCGAGCGTAGTGTGGTGTCGGTTCGTTTACCCTCTTCTTCTCTCCGATA
GTATATGCGCATCCGCCACACTTCCCCCTTTCTCCGGACGCTTATGTTTC
GCCCATATAATGCCCCTGATAACTTCTGCGTATCGTTCGCTAGCGCGCGT
TCATGTTACATACATGCACATCATAACCTGTATCTGTCACATCTCCTAGA
TAATATCACCTCAATCGCCGCCTGTTACGCCTCTCGGCCTGTTTATCCTG
CTTGCTTGTGTGTGATGGCCTGCCATACTTGACAGCTCGGTATCGTTTGT
TTGCGACGGCCCGCTTTCTCATCGTTTTACGTGTTCGTAGCCGCCACGTT
ATTTCTCTGCTTTGTCGTACGTGTGCGCTTATAGTATCCATCTCCTATTC
TTCCTCTATCTCG

Query= MSMg01no045_k14.b1 MSMg01no045_k14.b1 CHROMAT_FILE:
MSMg01no045_k14.b1 PHD_FILE: MSMg01no045_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:40 2005
         (635 letters)



>mm_chr9_120244431_120245465
          Length = 1035

 Score = 1145 bits (592), Expect = 0.0
 Identities = 622/632 (98%), Gaps = 2/632 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcccaagactgcagaa-ggagagtgttccactgtgagttttacacccactaaa 63
           ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 835 gaattcagcccaagactgcagaaggga-agtgttccactgtgagttttacacccactaaa 777

                                                                       
Query: 64  ggaaccgctaaggaataaaatagtatttcctatgacgccattacttctcttcattgtttg 123
           ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 776 ggaactgctaaggaataaaatagtatttcctatgacgccattagttctcttcattgtttg 717

                                                                       
Query: 124 taaacctctcccaggcaccttaaatatgcaagcaatacggaggcgagacaaacactaaat 183
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 716 taaacctctcccaggcaccttaaatacgcaagcaatacggaggcgagacaaacactaaat 657

                                                                       
Query: 184 acccgtggttctgaggtagtgtcttaaggtcctttggctcagtaccagactctaaggtga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 acccgtggttctgaggtagtgtcttaaggtcctttggctcagtaccagactctaaggtga 597

                                                                       
Query: 244 tgcaggtgtcatgcctttgggccaggtactttctgacacatgtcactggatatggaacgc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tgcaggtgtcatgcctttgggccaggtactttctgacacatgtcactggatatggaacgc 537

                                                                       
Query: 304 ccatcaggaaaggacagggtggttgtttcataaacccaagtgcaggattataacacagac 363
           ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 536 ccatcaggaaaggacagggtggttgttccataaacccaagtgcaagattataacacagac 477

                                                                       
Query: 364 agctgagccttgctatccgaacgaggtcaggcaaaagagccatctcaccttagccggtcc 423
           ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 476 agctgagccttgctatccgaacgaggtcaggcaaaggagctatctcaccttagccggtcc 417

                                                                       
Query: 424 tcctcctttttgcgaagattgaagtctctctgcaccacttggagaacgtgctcggtctca 483
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 416 tcctcctttttgcgaagattgaagtctctctgcaccacttggagaacatgctcggtctca 357

                                                                       
Query: 484 tcgtcggtcagacccgacaggtccagcttcctccccatgatcagagttaaacacggacaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tcgtcggtcagacccgacaggtccagcttcctccccatgatcagagttaaacacggacaa 297

                                                                       
Query: 544 ctgaactagatctgcggagtgaaaggagagatcagagactgaggacaggctcgagttcag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ctgaactagatctgcggagtgaaaggagagatcagagactgaggacaggctcgagttcag 237

                                           
Query: 604 tgtggctcaaatccaccctcaaccctgactta 635
           ||||||||||||||||||||||||||||||||
Sbjct: 236 tgtggctcaaatccaccctcaaccctgactta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)