BAC Information

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BAC

Clone NameMSMg01-046I08
Chromosome9 (Build37)
Map Location 10,661,813 - 10,806,491
singlet/doubletdoublet
Overlap geneLOC665178
Upstream geneCntn5, LOC665154, LOC100039970
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046I08.T7 (MSMg01no046_i08.b1)MSMg01-046I08.TJ (MSMg01no046_i08.g1)
ACCAG276878AG276879
length670686
length of high quality
(start - end)		481 (42 - 522)507 (73 - 579)
definitionCHROMAT_FILE: MSMg01no046_i08.b1 PHD_FILE: MSMg01no046_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:42 2005CHROMAT_FILE: MSMg01no046_i08.g1 PHD_FILE: MSMg01no046_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,661,813 - 10,662,291)(10,805,985 - 10,806,491)
sequence
GACTCCTATTCCGAGAGGATCCGCGGAATTCACCACCTACACCCTTACCT
TGCTTTTCCCCATGGAGGTTAGAATTTGGGAGAGCATCAGGTATTAAATA
TTCAGATTTTTGGTTTTAATGTTGTAATTTTGAAGTAATATAGACTTCAA
AACCTTTAGGAGTTTTGATTTCTCAGCATTTTACGAGCTGGAGTTACATG
CTCCAAGGTTGTATCTTTTGGGAATATGATTGTGAGTGATGCAAAGTAAC
ACAGTGATGTTGTCTCAGCAAGAATATGACAAACACCAACAACAAATCCT
TCTGTTCTCATTGGATATCAGGGAATTTGATTTAAAATGTCAGCATTAAA
TAATAAATACAAAAGGGAGAATAAGATGGCAGAATACTCAGTGGGGTCTT
GCTGTCAAAGGTGACAACCTGAGTTAAATCTTCAGACAAAAGATGGAAGA
GGAAATTTGACTCTCAAAAGTAGTCCTCTGAGCTCACTGCACAAAATGTT
GAGTGCCTGTGTGTGTATGTGTGTTTGGATGTGTGCCCATTTCACAGGTC
CTATCTACTTACTGCATGGAATTGGTTAATGGTCATCCTCCCTTCTTATA
TTGCAACCTGTACTTTTGCCTCCCTATACTTGAATTCTAAAATTTCTTTA
AAAAACTGGAAACTAAGCCG

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGGACAGTCAGGACTATACAGAGAAAC
TCTGTCTTGAAAAAACCAAAAAATAAAAATAAAATAAAATAAATAAAACA
CAATAATTAAAAATAGTAGCATAACTAAATAAAATTAATGCAGTCTGAAA
GTGATGTTACCAAACCACCATAGCATACCTGTGACTGCAATATTCCAAAT
GCCTGTATATTCAAAACTATCTTATGCTTGATTAAGCCATTCTTTTAGGA
TCCTGTTATTTACAGACAAATATTCTGAGATCCTATTTTACTACATAGGG
AGTTAAGTACCACTATAAGTGGTATAGAAGAGTTTGAATGTTGGAATGTT
TCGAATATGAAAATGTCTTCTAAGATACTGTTGCTCATGTTACAGAAACT
CTACCATCTCCAAACCTTTAAAATCCATTCTGATTGTCACCCTGTTTGCT
ATCCTCTTGCCTCATTACCGTTGAAAACTGTATCCTCTTTCTTGTGTTTA
TGTGCTATGTCACCAGCACACTATTTGGAGAAAGCATGGTGAAAGCTGCC
TCTCTCGCTAGCTCCACACTGTCTAGGCTTTCTTAATGTCATTTGCATTT
TTCTAAAAGGCAGATGTTTCTGGGCCTGTGATATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_i08.b1 MSMg01no046_i08.b1 CHROMAT_FILE:
MSMg01no046_i08.b1 PHD_FILE: MSMg01no046_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:42 2005
         (481 letters)



>mm_chr9_10661611_10662491
          Length = 881

 Score =  864 bits (447), Expect = 0.0
 Identities = 471/479 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   cttaccttgcttttccccatggaggttagaatttgggagagcatcaggtattaaatattc 62
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 203 cttaccttgcttttccccatggagattagaatttgggagagcatcaggtattaaatattc 262

                                                                       
Query: 63  agatttttggttttaatgttgtaattttgaagtaatatagacttcaaaacctttaggagt 122
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 263 agatttttggttttaatgttgtaattttgaagtaatatagactccaaaacctttaggagt 322

                                                                       
Query: 123 tttgatttctcagcattttacgagctggagttacatgctccaaggttgtatcttttggga 182
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 323 tttgatttctcagcattttacgagctggagttacatgctccaaggttgcatcttttggga 382

                                                                       
Query: 183 atatgattgtgagtgatgcaaagtaacacagtgatgttgtctcagcaagaatatgacaaa 242
           |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 383 atatgattgtgactgatgcaaagtaacacagtgatattgtctcagcaagaatatgacaaa 442

                                                                       
Query: 243 caccaacaacaaatccttctgttctcattggatatcagggaatttgatttaaaatgtcag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 caccaacaacaaatccttctgttctcattggatatcagggaatttgatttaaaatgtcag 502

                                                                       
Query: 303 cattaaataataaatacaaaagggagaataagatggcagaatactcagtggggtcttgct 362
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cattaaataataagtacaaaagggagaataagatggcagaatactcagtggggtcttgct 562

                                                                       
Query: 363 gtcaaaggtgacaacctgagttaaatcttcagacaaaagatggaagaggaaatttgactc 422
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gccaaaggtgacaacctgagttaaatcttcagacaaaagatggaagaggaaatttgactc 622

                                                                      
Query: 423 tcaaaagtagtcctctgagctcactgcacaaaatgttgagtgcctgtgtgtgtatgtgt 481
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 623 tcaaaagtagtcctctgagctcactgcacaaaatggtgagtgcctgtgtgtgtatgtgt 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no046_i08.g1 MSMg01no046_i08.g1 CHROMAT_FILE:
MSMg01no046_i08.g1 PHD_FILE: MSMg01no046_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:42 2005
         (507 letters)



>mm_chr9_10805701_10806607
          Length = 907

 Score =  934 bits (483), Expect = 0.0
 Identities = 501/507 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagtcaggactatacagagaaactctgtcttgaaaaaaccaaaaaataaaaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 caggacagtcaggactatacagagaaactctgtcttgaaaaaaccaaaaaataaaaataa 732

                                                                       
Query: 61  aataaaataaataaaacacaataattaaaaatagtagcataactaaataaaattaatgca 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 731 aataaaataaataaaacacaataattaaaaatagtagcataaccaaataaaattaatgca 672

                                                                       
Query: 121 gtctgaaagtgatgttaccaaaccaccatagcatacctgtgactgcaatattccaaatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gtctgaaagtgatgttaccaaaccaccatagcatacctgtgactgcaatattccaaatgc 612

                                                                       
Query: 181 ctgtatattcaaaactatcttatgcttgattaagccattcttttaggatcctgttattta 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 611 ctgtatattcaaaactatcttatgcttgattaagtcattcttttaggatcctgttattta 552

                                                                       
Query: 241 cagacaaatattctgagatcctattttactacatagggagttaagtaccactataagtgg 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 551 cagacaaatattctgagatcctatcttactacatagggagttaagtaccactataagtgg 492

                                                                       
Query: 301 tatagaagagtttgaatgttggaatgtttcgaatatgaaaatgtcttctaagatactgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tatagaagagtttgaatgttggaatgtttcgaatatgaaaatgtcttctaagatactgtt 432

                                                                       
Query: 361 gctcatgttacagaaactctaccatctccaaacctttaaaatccattctgattgtcaccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 431 gctcatgttacagaaactctaccatctccaaacctttaaaatccattctgagtgtcaccc 372

                                                                       
Query: 421 tgtttgctatcctcttgcctcattaccgttgaaaactgtatcctctttcttgtgtttatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| 
Sbjct: 371 tgtttgctatcctcttgcctcattaccgttgaaaactgtatcctcttccttgtgtttatt 312

                                      
Query: 481 tgctatgtcaccagcacactatttgga 507
           |||||||||||||||||||||||||||
Sbjct: 311 tgctatgtcaccagcacactatttgga 285


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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