BAC Information

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BAC

Clone NameMSMg01-046J18
Chromosome9 (Build37)
Map Location 87,268,565 - 87,269,021
singlet/doubletsinglet
Overlap genenone
Upstream gene2610018I03Rik, Pgm3, Rwdd2, Mod1, Prss35, Snap91, C030002E08Rik, Cyb5r4, LOC666777, LOC244958, LOC100039510, 4922501C03Rik
Downstream geneLOC671706, Tbx18, LOC671731, LOC100039580, LOC384962, EG272633, Nt5e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046J18.T7 (MSMg01no046_j18.b1)MSMg01-046J18.TJ (MSMg01no046_j18.g1)
ACCAG276944AG276945
length759681
length of high quality
(start - end)
462 (101 - 562)322 (55 - 376)
definitionCHROMAT_FILE: MSMg01no046_j18.b1 PHD_FILE: MSMg01no046_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:48 2005CHROMAT_FILE: MSMg01no046_j18.g1 PHD_FILE: MSMg01no046_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTTTTTTTCCCCCCCCNTCTTTTTTCTATCTCTCNGTCCCTCTTCTTT
CTCANACCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CCGCGGAATTCAAGTAATGCCCATTATTATGCATCACCACACAAAATTTA
TTAGTATGGGTTCCTTTATTTATGTCTACAGTGGATTTTACCCCTACTTT
TAAAACTGAGTTCAGTTACTCAGACTATTCAAATGGGATAACCATTCCTT
TACAAATTTCAAGTATAATCTTAAGAAGTCATGTTTGCACTTCATCAGTA
AAGACAGCATAAAGTTTCTGACATACAACTAGATGAGTGTAGTGTCTTCA
ACGTGATTGACTTGAAAGGAGTAACACTTATTTGCATGTGTGAGCTACGC
AATGCTGAATCCTAAAAGGCAAGTCTGTTACTTTACCTCCATGACCTGTA
AGGAACACTGGCTTTGATTTATCTCACGGGCATCCCAATTCTCTGTGATC
CCATAAATGCATGGAGAGCTCTTCAAGACACCACTTGCTGCTCTCATATC
AAGCAGGAGCCCCAAAGTGGCATTCACTCCATCTGTAATTGCCCGCAGAA
CCCAAAGAACAAAGCGTAGTCCTTCCATTTGATACCAGTTGAAGAACAGA
TGATCTTTGACAATCATCCTTCTCCTGGTGCCTTACACTCCACATGATTT
CCAGTTCTATGGAACTAGCTTTCAAATCTTCCCCATTATTCCATTTATCT
AACTGCCTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTAAAAGTGTGGTGGAGATGCTGGCATGTAGCTCTCCACAACTGA
TAGCTTGTGGCAGGGTTGGGGAGGGGTGCAGAAAGAGAAGGGCTCAGTTC
TTGTTTGAGGGTAGGCCACTCTCCATGCTCCAGTGAGTACATAGAGAACA
CGAAGTGGACTTGGGTTCTTTCTTTCTCTTTTTACATCTTTTTGGGGGAG
GTGAGGATCACAGAGGTGGCAGACATGAAAGGACCAAGAAGGGATGTGAA
ATTCCCAGAGAACCAGTAAAAGGGCTATGTGGAAAAATAAAAACATTCAT
TAGAAATTATTCTTTTTTCCCTATTGATAATAAAATCAAATTTAATGCAC
AAAATAAATCTGTGTAGGAGAAAAATAGACATGACTCAAATGCCACATAC
CTTCTTCTTACCTAGAGCTAATAGGGTTTCTTGAATGACAGCTTCCCACT
TGCTATATGCCCATGAGAAAATTTTCAGTCTTCAAAAACACTTACAATAC
ATATATTTATGAGTTCAGTTATTTTGCTGGAAAGAAGATCCCCTGAGCTC
TTTGTTAAGTCATTCCTGAAGTCCTGTCCAGATCAAGATTTTAAACCATT
ATATTCGGAGGTAGAAAAATTTACCACACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_j18.b1 MSMg01no046_j18.b1 CHROMAT_FILE:
MSMg01no046_j18.b1 PHD_FILE: MSMg01no046_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:48 2005
         (462 letters)



>mm_chr9_87268360_87269221
          Length = 862

 Score =  830 bits (429), Expect = 0.0
 Identities = 450/457 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcaagtaatgcccattattatgcatcaccacacaaaatttattagtatgggttcct 65
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaagtaatggccattattatgcatcaccacacaaaatttattagtatgggttcct 265

                                                                       
Query: 66  ttatttatgtctacagtggattttacccctacttttaaaactgagttcagttactcagac 125
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 266 ttatttatgtctacagtggattttgcccctacttttaaaactgagttcagttactcagac 325

                                                                       
Query: 126 tattcaaatgggataaccattcctttacaaatttcaagtataatcttaagaagtcatgtt 185
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tactcaaatgggataaccattcctttacaaatttcaagtataatcttaagaagtcatgtt 385

                                                                       
Query: 186 tgcacttcatcagtaaagacagcataaagtttctgacatacaactagatgagtgtagtgt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgcacttcatcagtaaagacagcataaagtttctgacatacaactagatgagtgtagtgt 445

                                                                       
Query: 246 cttcaacgtgattgacttgaaaggagtaacacttatttgcatgtgtgagctacgcaatgc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cttcaacgtgattgacttgaaaggagtaacacttatttgcatgtgtgagctacgcaatgc 505

                                                                       
Query: 306 tgaatcctaaaaggcaagtctgttactttacctccatgacctgtaaggaacactggcttt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgaatcctaaaaggcaagtctgttactttacctccatgacctgtaaggaacactggcttt 565

                                                                       
Query: 366 gatttatctcacgggcatcccaattctctgtgatcccataaatgcatggagagctcttca 425
           |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 566 gatttatctcacgggcatcccaattctctgtgatcccataaatgtattgagagctcttca 625

                                                
Query: 426 agacaccacttgctgctctcatatcaagcaggagccc 462
           ||||||||||||||||||||| ||||| |||||||||
Sbjct: 626 agacaccacttgctgctctcaaatcaaacaggagccc 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)