Query= MSMg01no046_l04.b1 MSMg01no046_l04.b1 CHROMAT_FILE:
MSMg01no046_l04.b1 PHD_FILE: MSMg01no046_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:55 2005
(565 letters)
>mm_chr9_34405807_34406772
Length = 966
Score = 1042 bits (539), Expect = 0.0
Identities = 560/575 (97%), Gaps = 14/575 (2%)
Strand = Plus / Minus
Query: 5 gaattcactgattgtgcgttattgaacctaatcagtcaaaatgagaaatgggactcaggc 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 gaattcactgattgtgggttattgaacctaatcagtcaaaatgagaaatgggactcaggc 875
Query: 65 aaagtttcttttctgcccatgctccacctgtttctctgtttaatcccatgttctcttgct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 aaagtttcttttctgcccatgctccacctgtttctctgtttaatcccatgttctcttgct 815
Query: 125 tgcttgcccttatctagctggatacaacttccctg-------------ccccccccc-ct 170
||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 814 tgcttgcccttatctagctggatacaacttccctgttccccccccccccccccccccgct 755
Query: 171 tcctgctactctctgcctacagcaggctcatgctagtcttagtaacaatgttaagtggct 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 tcctgctactctctgcctacagcaggctcatgctagtcttagtaacaatgttaagtggct 695
Query: 231 ttgacccatgaatagcttttagatggtggtgccaatccagttccgggggagggagccaga 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ttgacccatgaatagcttttagatggtggtgccaatccagttccgggggagggagccaga 635
Query: 291 tgcaaacaatgcagaaacaacgttggtgttcagatatagagctaaatgggccaatccaga 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tgcaaacaatgcagaaacaacgttggtgttcagatatagagctaaatgggccaatccaga 575
Query: 351 gtgtcactccctccatcatgatgatgctgtgctcattagtgtctatttccagcagtctca 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gtgtcactccctccatcatgatgatgctgtgctcattagtgtctatttccagcagtctca 515
Query: 411 ttgtgccccctcagaattggtcctgagatctggctgcatagatattgcattatcaagttt 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ttgtgccccctcagaattggtcctgagatctggctgcatagatattgcattatcaagttt 455
Query: 471 cattatcattgcctttgtttccctcttaccagtactagtaaaagacatcagataaggagt 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cattatcattgcctttgtttccctcttaccagtactagtaaaagacatcagataaggagt 395
Query: 531 gggctccactttgctcaccaaagacaaacttcttc 565
|||||||||||||||||||||||||||||||||||
Sbjct: 394 gggctccactttgctcaccaaagacaaacttcttc 360
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 966
Length adjustment: 10
Effective length of query: 555
Effective length of database: 956
Effective search space: 530580
Effective search space used: 530580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no046_l04.g1 MSMg01no046_l04.g1 CHROMAT_FILE:
MSMg01no046_l04.g1 PHD_FILE: MSMg01no046_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:55 2005
(519 letters)
>mm_chr9_34297158_34298076
Length = 919
Score = 951 bits (492), Expect = 0.0
Identities = 513/520 (98%), Gaps = 2/520 (0%)
Strand = Plus / Plus
Query: 1 tgaatcctaccaagcactggattaggtgtatgaaatggaatttcgcccctggtgccgatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaatcctaccaagcactggattaggtgtatgaaatggaatttcgcccctggtgccgatt 260
Query: 61 gcttcctttctgcaatcctagcaggtggactctccagaaagaactttgctacctctggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttcctttctgcaatcctagcaggtggactctccagaaagaactttgctacctctggga 320
Query: 121 tccttgccactgagagtcatggggtgggtcatggtggagggaggactaagcacgcgccct 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tccttgccactgagagtcatggggtgggtcatggtggagggaggactaagcacgcgcc-t 379
Query: 181 acttagctaaaggcatcaacagtcacctgtggaattaagactgaaagagccaagtcaacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acttagctaaaggcatcaacagtcacctgtggaattaagactgaaagagccaagtcaacc 439
Query: 241 cattccgtcccactcttttggaatggcagtgccacctctgccatctgaggcagcatgtgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cattccgtcccactcttttggaatggcagtgccacctctgccatctgaggcagcatgtgt 499
Query: 301 gcctgccagcacagctcttggagggacaggactttcagaaaaaaaaaaaaa-tccacaac 359
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 500 gcctgccagcacagctcttggagggacaggactttcagaaaaaaaaaaaaaatccacaac 559
Query: 360 agagaacatccatctgttgattaaatgaagggtaaaagtttttaagaaagcagaacatcg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agagaacatccatctgttgattaaatgaagggtaaaagtttttaagaaagcagaacatcg 619
Query: 420 ccatgggcggctgcctgtgcagacagtgtgtatcccttgcttctcttgtcgggagaagcc 479
||||||| ||||||||||||| |||||||||| ||||||||||||||||| |||||||||
Sbjct: 620 ccatgggtggctgcctgtgcaaacagtgtgtaccccttgcttctcttgtcaggagaagcc 679
Query: 480 aactataagtaaaaccaggcttccttctccctttccccgg 519
|| |||||||||||||||||||||||||||||||||||||
Sbjct: 680 aaatataagtaaaaccaggcttccttctccctttccccgg 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
