BAC Information

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BAC

Clone NameMSMg01-047D12
Chromosome9 (Build37)
Map Location 75,818,275 - 75,862,322
singlet/doubletdoublet
Overlap genenone
Upstream geneBC031353, Arpp19, LOC100040812, Myo5a, LOC677501, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071
Downstream geneHmgcll1, Gfral, Hcrtr2, C530008M07Rik, Tinag
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047D12.T7 (MSMg01no047_d12.b1)MSMg01-047D12.TJ (MSMg01no047_d12.g1)
ACCAG277385AG277386
length739832
length of high quality
(start - end)		509 (46 - 554)221 (77 - 297)
definitionCHROMAT_FILE: MSMg01no047_d12.b1 PHD_FILE: MSMg01no047_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:31 2005CHROMAT_FILE: MSMg01no047_d12.g1 PHD_FILE: MSMg01no047_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,818,275 - 75,818,679)(75,862,107 - 75,862,322)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAGTTAAGGGCCAAGAAAGCAGAAAAACATGGATGCTGGTTTGC
TGCTTAGTACTCTTTCCTCACTCACATTCCTGGGACAAGCCTGTGTAGTG
CCACTCACAATGGGTGCATTCACCCCTCAATCAAAACAGTCTCCCACCCG
AGACAGGGTCCCAGGCCAGTGTGAGCAGTGACCGACATAATTCCTTGTTA
AGACTTCCTTCCTGGGTGATTCTTAGCTATGGCAGGTTGGCACTGAAGCT
GACTGGCACAACTTCAATAATCTTGAGCCTGACAATTCCCATAAGGCCTC
TACTAGCAGTTATCTTTACAGGTTATTAGGCTGAAAAAAAGCTCAATAAG
ATTATCAAGGATATGCAGAGGAAGAAGAGATTATATATATATATATATAT
ATATATATATATATATACATATATATACATATATATATATACATATATAT
ATATGTATATATATGTATATATATATATACATATATATATATATATATAT
AATCTCNTCTATCTACGTATACTTTTGATAATCTTATTGAGCTTTTTTTT
AGTCGTACTATCCTGTACAGATAACTGCCTATTAGAGGCCCCTTTGCTAA
TTGGCAGTCTCAAGATTATTTGAAGTTGCTGCCAGTCCGGCTTCTTGTTG
CTTAATATGCTATTGCTTAACATTCCCCTTCGTTTGGAA

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTCGCTGTTTTACATTTATTG
GTTTTAGTGGTTGTCTCCTTCCACTGTCACATGGGGTTAGGACTAGAACT
TAACTGTCTGCTTCGGCGTCACCACAAGTTCCTTTACTATCCCCCTGGGT
ATGAAGAACTGTTTTTTTAAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCCCCTCTTTTCCCCCCTTTCTTCTCTC
TTCTCCCCTCCTTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCTTTTTTT
TCCCTCTTTTTTTTTCTTTTTCCTCTTTTCCCCCCCCTTTTAAAAAAAAA
AAAATTATCTGGGGGGGGGGGGCGGGCCTCTCCCCTCCCTCTTTTTTTTT
TTTTCCACATCTCTCATCTCTCTACATTTTCCCTTGCAACTTTCTTTTCC
TGTTCCAACCCCGCTCTTTTGTTCTTCCTTTTCACTCGCCTTCCTTTTTC
CCCCGTCTCCCTACCCCACAATTTTCTCTTCCCCTTTTCCCCCCCCCATT
ACTTCTATTCCATCCGCATTTCTCCTTATTGACTTTTCCCTCTCTTCCCC
CCCTTCTCCCCTCTCTTCCCTCCCTTTCTTCCCTCTTCTTCCTTTTCCCC
CCCCTACCCTCTCTTTCCACTCTTTCTCTTTCTCCTTCTATTCTCTCTAC
GACTCACCCCTTCACAATATATTCCTTTACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_d12.b1 MSMg01no047_d12.b1 CHROMAT_FILE:
MSMg01no047_d12.b1 PHD_FILE: MSMg01no047_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:31 2005
         (509 letters)



>mm_chr9_75818072_75818980
          Length = 909

 Score =  760 bits (393), Expect = 0.0
 Identities = 402/405 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacagttaagggccaagaaagcagaaaaacatggatgctggtttgctgcttagt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacagttaagggccaagaaagcagaaaaacatggatgctggtttgctgcttagt 263

                                                                       
Query: 64  actctttcctcactcacattcctgggacaagcctgtgtagtgccactcacaatgggtgca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 actctttcctcactcacattcctgggacaagcctgtgtagtgccactcacaatgggtgca 323

                                                                       
Query: 124 ttcacccctcaatcaaaacagtctcccacccgagacagggtcccaggccagtgtgagcag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcacccctcaatcaaaacagtctcccacccgagacagggtcccaggccagtgtgagcag 383

                                                                       
Query: 184 tgaccgacataattccttgttaagacttccttcctgggtgattcttagctatggcaggtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgaccgacataattccttgttaagacttccttcctgggtgattcttagctatggcaggtt 443

                                                                       
Query: 244 ggcactgaagctgactggcacaacttcaataatcttgagcctgacaattcccataaggcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggcactgaagctgactggcacaacttcaataatcttgagcctgacaattcccataaggcc 503

                                                                       
Query: 304 tctactagcagttatctttacaggttattaggctgaaaaaaagctcaataagattatcaa 363
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctactaacagttatctttacaggttattaggctgaaaaaaagctcaataagattatcaa 563

                                                        
Query: 364 ggatatgcagaggaagaagagattatatatatatatatatatata 408
           ||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 564 ggatatgcagaggaagaagagattatatatatatacatacatata 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 148
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no047_d12.g1 MSMg01no047_d12.g1 CHROMAT_FILE:
MSMg01no047_d12.g1 PHD_FILE: MSMg01no047_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:31 2005
         (221 letters)



>mm_chr9_75861981_75862601
          Length = 621

 Score =  371 bits (192), Expect = e-107
 Identities = 210/216 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttcgctgttttacatttattggttttagtggttgtctccttccactgtcacatgggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tttttcgctgttttacatttattggttttagtggttgtctccttccactgtcacatgggg 283

                                                                       
Query: 61  ttaggactagaacttaactgtctgcttcggcgtcaccacaagttcctttactatccccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ttaggactagaacttaactgtctgcttcggcgtcaccacaagttcctttactatccccct 223

                                                                       
Query: 121 gggtatgaagaactgtttttttaagaagaagaaaaagaagaagaagaagaagaagaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| || || || |
Sbjct: 222 gggtatgaagaactgtttttttaagaagaagaaaaagaagaagaagaaggaggaggagga 163

                                               
Query: 181 gaagaaggaggaggaggaggaggaggaggaggagga 216
           | || |||||||||||||||||||||||||||||||
Sbjct: 162 ggaggaggaggaggaggaggaggaggaggaggagga 127


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 621
Length adjustment: 9
Effective length of query: 212
Effective length of database: 612
Effective search space:   129744
Effective search space used:   129744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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