Query= MSMg01no048_d06.b1 MSMg01no048_d06.b1 CHROMAT_FILE:
MSMg01no048_d06.b1 PHD_FILE: MSMg01no048_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:53 2005
(547 letters)
>mm_chr9_93647373_93648319
Length = 947
Score = 963 bits (498), Expect = 0.0
Identities = 534/546 (97%), Gaps = 1/546 (0%)
Strand = Plus / Minus
Query: 1 tggaatattccctagtttgagaaatctccgttttggggccctgcacttaccagtctgcat 60
|||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||
Sbjct: 698 tggaatattccctagtttgagaaatctctgttttggggccctggatttaccagtctgcat 639
Query: 61 gttcatacaaacctctgcattccttttgactttggagtcccttataggtctgttcatcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gttcatacaaacctctgcattccttttgactttggagtcccttataggtctgttcatcat 579
Query: 121 atttgcatacagaccaaatggaccaagacagcttctcagtaaccctgcagaacaatcgaa 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 578 atttgcatacagaccaaatggaccaagacagcttctcagtaactctgcagaacaatcgaa 519
Query: 181 tgacaataacctaaggaagttatatcattccctggttatggctgcaggagcctcacttca 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 518 tgacaataacctaaggaagttatatcactccctggttatggctgcaggagcctcacttca 459
Query: 241 ctgtctatagtcactcacagacccacatgtagattccatgcaccttgttgaattgagcct 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ctgtctacagtcactcacagacccacatgtagattccatgcaccttgttgaattgagcct 399
Query: 301 aagttggaagaaatatcatatttttcaagtagtacaatagatgattacttagttgtctta 360
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 398 aagttggaagaaatatcataattttcaagtagtacaatagatgattatttagttgtctta 339
Query: 361 tcacaggcaaaatgatttaagagtaacttgctgaaaattacatgcatgttggcacacatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tcacaggcaaaatgatttaagagtaacttgctgaaaattacatgcatgttggcacacatg 279
Query: 421 aacttaggcaaacacaaaaacatatagtatcctaagtttcctacaggtgcttacacacaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 278 aacttaggcaaacacaaaaacatatagtatcctaagtttcctacaggtgcttacaaacaa 219
Query: 481 aacacactgattttgttttttta-atatatatatatatatatatatatatatatatatat 539
|||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct: 218 aacacactgattttgtttatatatatatatatatatatatatatatatatatatatatat 159
Query: 540 atatat 545
||||||
Sbjct: 158 atatat 153
Score = 83.9 bits (43), Expect = 3e-20
Identities = 46/47 (97%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 500 ttta-atatatatatatatatatatatatatatatatatatatatat 545
|||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 tttatatatatatatatatatatatatatatatatatatatatatat 192
Score = 81.9 bits (42), Expect = 1e-19
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 504 atatatatatatatatatatatatatatatatatatatatat 545
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 atatatatatatatatatatatatatatatatatatatatat 194
Score = 81.9 bits (42), Expect = 1e-19
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 504 atatatatatatatatatatatatatatatatatatatatat 545
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 atatatatatatatatatatatatatatatatatatatatat 196
Score = 81.9 bits (42), Expect = 1e-19
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 504 atatatatatatatatatatatatatatatatatatatatat 545
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 atatatatatatatatatatatatatatatatatatatatat 198
Score = 81.9 bits (42), Expect = 1e-19
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 504 atatatatatatatatatatatatatatatatatatatatat 545
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 atatatatatatatatatatatatatatatatatatatatat 200
Score = 80.0 bits (41), Expect = 4e-19
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 504 atatatatatatatatatatatatatatatatatatatata 544
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 atatatatatatatatatatatatatatatatatatatata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 126
Number of extensions: 41
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 12
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no048_d06.g1 MSMg01no048_d06.g1 CHROMAT_FILE:
MSMg01no048_d06.g1 PHD_FILE: MSMg01no048_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:53 2005
(678 letters)
>mm_chr9_93487161_93488238
Length = 1078
Score = 1263 bits (653), Expect = 0.0
Identities = 671/677 (99%)
Strand = Plus / Plus
Query: 2 caattataagcatgcttaataacccaaagaccgtaataaacaaatgcccaaaggagaaaa 61
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 202 caattataagcatgcttaataacccaaagacagtaataaacaaatgcccaaaggagaaaa 261
Query: 62 atgaaaatataaacaagcagttgaatgaaatgaaacttcaaatgagaaacgctagaaatc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atgaaaatataaacaagcagttgaatgaaatgaaacttcaaatgagaaacgctagaaatc 321
Query: 122 aaacaaaaatgtcctaggaaactatcaccaacagactagagggaatgacctacgaggtag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaacaaaaatgtcctaggaaactatcaccaacagactagagggaatgacctacgaggtag 381
Query: 182 aggagatggatcacttgatgtgaacaatgttaattttatttaacttattaagtatttact 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aggagatggatcacttgatgtgaacaatgttaattttatttaacttattaagtatttact 441
Query: 242 tcatttacatttccaatgctatcacaaaagtcccccataacctcccctccccattctcct 301
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 442 tcatttacatatccaatgctatcacaaaagtcccccataacctcccctccccactcttct 501
Query: 302 ccccacctactcctacttcttggccctggcatttctctgtacttaggcatataaagtttg 361
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 502 ccccacctactcctacttcttggccctggcatttctctgtactgaggcatataaagtttg 561
Query: 362 caagactaaggggcctctctttccaatgatggccaattaggtcatcttctgatacatatg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 caagactaaggggcctctctttccaatgatggccaattaggtcatcttctgatacatatg 621
Query: 422 aagctagagagacaccagctccaggggatactggttagttcatattgttgttccacctat 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aagctagagagacaccagctccaggggatactggttagttcatattgttgttccacctat 681
Query: 482 aggtttgcagacctctttagctccttggatactttctatagctcctacattgggggtcct 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aggtttgcagacctctttagctccttggatactttctatagctcctacattgggggtcct 741
Query: 542 ggggtccatccaatagctggctgtgagcatccacttctgtgtttgctaggccccagtgta 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ggggtccatccaatagctggctgtgagcatccacttctgtgtttgctaggccccagtgta 801
Query: 602 gtctcacaagagatagctatatcagggtcctttcagcaaaatcttgctagtatatgcaat 661
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 802 gtctcacaagagatagctatatcagggtcctttcagcaaaatcttgctagtgtatgcaat 861
Query: 662 ggtgtcagtgtctggag 678
|||||||||||||||||
Sbjct: 862 ggtgtcagtgtctggag 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
